Travis J. Wheeler

ORCID: 0000-0003-2004-1785

Agricultural and Biological SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.0Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Complete genomic and epigenetic maps of human centromeres

Science(2022)10.1126/science.abl4178

Top 4%

5.0DataRank

Top 4%637 citations

Glennis A. Logsdon, Andrey V. Bzikadze, Pragya Sidhwani, Sasha A. Langley, Gina V. Caldas +54 more

Papers

Driven by 36 papers — median percentile 80. Top paper: “Complete genomic and epigenetic maps of human centromeres”.

Complete genomic and epigenetic maps of human centromeres

Science(2022)10.1126/science.abl4178

Top 4%

5.0DataRank

Top 4%637 citations

Glennis A. Logsdon, Andrey V. Bzikadze, Pragya Sidhwani, Sasha A. Langley, Gina V. Caldas +54 more

TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation

Mobile DNA(2021)10.1186/s13100-021-00244-0

Top 18%

1.1DataRank

Top 18%38 citations

Tony Heitkam, Robert M. Hubley, Hadi Quesneville, Alexander Suh, Travis J. Wheeler +1 more

Complete genomic and epigenetic maps of human centromeres

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.12.452052

Top 22%

0.911DataRank

Top 22%17 citations

Glennis A. Logsdon, Andrey V. Bzikadze, Pragya Sidhwani, Sasha A. Langley, Gina V. Caldas +53 more

MDRepo—an open data warehouse for community-contributed molecular dynamics simulations of proteins

Nucleic Acids Research(2025)10.1093/nar/gkae1109

Top 35%

0.561DataRank

Top 35%15 citations

Ethan Ward, Illyoung Choi, Michele Cosi, Tony Edgin, Travis S Hughes +14 more

Transposable element subfamily annotation has a reproducibility problem

Mobile DNA(2021)10.1186/s13100-021-00232-4

N/A

0DataRank · unranked

26 citations

Gilia Patterson, Travis J. Wheeler, Kaitlin Carey

An optimized FM-index library for nucleotide and amino acid search

Algorithms for Molecular Biology(2021)10.1186/s13015-021-00204-6

N/A

0DataRank · unranked

10 citations

Travis J. Wheeler, Tim Anderson

PolyA: a tool for adjudicating competing annotations of biological sequences

The Mathematics Enthusiast(2021)10.1101/2021.02.13.430877

N/A

0DataRank · unranked

7 citations

Robert M. Hubley, George T. Lesica, Daniel R. Olson, Jack W. Roddy, Jeb Rosen +4 more

An optimized FM-index library for nucleotide and amino acid search

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.12.426474

N/A

0DataRank · unranked

2 citations

Travis J. Wheeler, Tim Anderson

From telomere to telomere: The transcriptional and epigenetic state of human repeat elements

Science(2022)10.1126/science.abk3112

N/A

0DataRank · unranked

408 citations

Jessica M. Storer, Gabrielle A. Hartley, Patrick G. S. Grady, Ariel Gershman, Leonardo Gomes de Lima +22 more

Drugsniffer: An Open Source Workflow for Virtually Screening Billions of Molecules for Binding Affinity to Protein Targets

Frontiers in Pharmacology(2022)10.3389/fphar.2022.874746

N/A

0DataRank · unranked

16 citations

Thomas Colligan, George T. Lesica, Daniel R. Olson, Jeremiah Gaiser, Conner Copeland +3 more

SODA: a TypeScript/JavaScript library for visualizing biological sequence annotation

NAR Genomics and Bioinformatics(2022)10.1093/nargab/lqac077

N/A

0DataRank · unranked

6 citations

George T. Lesica, Travis J. Wheeler, Jack W Roddy

Do molecular fingerprints identify diverse active drugs in large-scale virtual screening? (no)

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.20.508800

N/A

0DataRank · unranked

1 citations

Jeremiah Gaiser, Daphne Demekas, Amitava Roy, Rui Xiong, Travis J. Wheeler +1 more

Mirage2 ’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.14.520492

N/A

0DataRank · unranked

0 citations

Travis J. Wheeler, Alex Nord

A community effort in SARS‐CoV‐2 drug discovery

Molecular Informatics(2023)10.1002/minf.202300262

N/A

0DataRank · unranked

18 citations

Philipp Seidl, Katarina Elez, Tim Hempel, Tuan Le, Frank Noé +95 more

Framework of the Alu Subfamily Evolution in the Platyrrhine Three-Family Clade of Cebidae, Callithrichidae, and Aotidae

Genes(2023)10.3390/genes14020249

N/A

0DataRank · unranked

5 citations

Jerilyn A. Walker, Jasmine Baker, Shifat Hossain, Christian Roos, Travis J. Wheeler +2 more

Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections

Frontiers in Immunology(2020)10.3389/fimmu.2020.00244

N/A

0DataRank · unranked

133 citations

Elizabeth B. Burgener, Margie Kinnersley, Laura K. Jennings, Valery Cristina Román-Cruz, Medeea C. Popescu +11 more

DISCO: A deep learning ensemble for uncertainty-aware segmentation of acoustic signals

PLoS ONE(2023)10.1371/journal.pone.0288172

N/A

0DataRank · unranked

2 citations

Kayla Irish, Douglas J. Emlen, Travis J. Wheeler, Thomas Colligan

DISCO: A deep learning ensemble for uncertainty-aware segmentation of acoustic signals

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.24.525459

N/A

0DataRank · unranked

2 citations

Kayla Irish, Douglas J. Emlen, Travis J. Wheeler, Thomas Colligan

VIBES: A Workflow for Annotating and Visualizing Viral Sequences Integrated into Bacterial Genomes

The Mathematics Enthusiast(2023)10.1101/2023.10.17.562434

N/A

0DataRank · unranked

0 citations

Jack W Roddy, Amelia K. Schmidt, Patrick R. Secor, Travis J. Wheeler, Conner J Copeland

Predicting metabolic modules in incomplete bacterial genomes with MetaPathPredict

eLife(2024)10.7554/elife.85749

N/A

0DataRank · unranked

15 citations

Kishori M. Konwar, Virginia P. Edgcomb, Maria Pachiadaki, Jack W Roddy, Travis J. Wheeler +2 more

ULTRA-effective labeling of tandem repeats in genomic sequence

Bioinformatics Advances(2024)10.1093/bioadv/vbae149

N/A

0DataRank · unranked

12 citations

Travis J. Wheeler, Daniel R. Olson

Do Molecular Fingerprints Identify Diverse Active Drugs in Large-Scale Virtual Screening? (No)

Pharmaceuticals(2024)10.3390/ph17080992

N/A

0DataRank · unranked

11 citations

Jeremiah Gaiser, Daphne Demekas, Amitava Roy, Rui Xiong, Travis J. Wheeler +1 more

WAS IT A MATch I SAW? Approximate palindromes lead to overstated false match rates in benchmarks using reversed sequences

Bioinformatics Advances(2024)10.1093/bioadv/vbae052

N/A

0DataRank · unranked

7 citations

Travis J. Wheeler, George Glidden-Handgis

An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models

BMC Bioinformatics(2024)10.1186/s12859-024-05879-3

N/A

0DataRank · unranked

7 citations

Travis J. Wheeler, Tim Anderson

Sensitive and error-tolerant annotation of protein-coding DNA with BATH

Bioinformatics Advances(2024)10.1093/bioadv/vbae088

N/A

0DataRank · unranked

5 citations

Walt Shands, Travis J. Wheeler, Genevieve R. Krause

nail: software for high-speed sequence annotation with profile hidden Markov models

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.27.577580

N/A

0DataRank · unranked

5 citations

David H. Rich, Travis J. Wheeler, Jack W. Roddy

Phenome-Wide Association of APOE Alleles in the All of Us Research Program

medRxiv(2024)10.1101/2024.09.04.24313010

N/A

0DataRank · unranked

3 citations

Valentina Ghisays, Ignazio S. Piras, Kiana L. Martinez, Marcus Naymik, Preston Ngo +7 more

Diviner uncovers hundreds of novel human (and other) exons though comparative analysis of proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.05.592595

N/A

0DataRank · unranked

1 citations

Travis J. Wheeler, Alexander J Nord

Phenome-wide association of APOE alleles in the All of Us Research Program

EBioMedicine(2025)10.1016/j.ebiom.2025.105768

N/A

0DataRank · unranked

10 citations

Valentina Ghisays, Ignazio S. Piras, Kiana L. Martinez, A. Vicenti, Marcus Naymik +8 more

NEAR: neural embeddings for amino acid relationships

Bioinformatics(2025)10.1093/bioinformatics/btaf198

N/A

0DataRank · unranked

2 citations

Thomas Colligan, Daphne Demekas, Jack W Roddy, Ken Youens‐Clark, Travis J. Wheeler +1 more

Simpatico: accurate and ultra-fast virtual drug screening with atomic embeddings

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.08.658499

N/A

0DataRank · unranked

0 citations

Travis J. Wheeler, Jeremiah Gaiser

DIPLOMAT: multi-animal tracking with efficient manual editing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.11.669786

N/A

0DataRank · unranked

0 citations

George Glidden-Handgis, Neekesh Panchal, Nathan Insel, Travis J. Wheeler, Isaac Robinson

Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

PLoS ONE(2023)10.1371/journal.pone.0285225

N/A

0DataRank · unranked

4 citations

Travis J. Wheeler, Alex Nord

Transposable Element Subfamily Annotation is Unreliable in Biological Replicates

Research Square(2020)10.21203/rs.3.rs-86308/v1

N/A

0DataRank · unranked

1 citations

Gilia Patterson, Travis J. Wheeler, Kaitlin Carey

Transposable Element Subfamily Annotation is Unreliable in Biological Replicates

Research Square(2020)10.21203/rs.3.rs-86308/v2

N/A

0DataRank · unranked

1 citations

Gilia Patterson, Travis J. Wheeler, Kaitlin Carey

Transposable Element Subfamily Annotation has a reproducibility problem

Research Square(2020)10.21203/rs.3.rs-86308/v3

N/A

0DataRank · unranked

0 citations

Gilia Patterson, Travis J. Wheeler, Kaitlin Carey

Travis J. Wheeler

Indexed papers

Top data-sharing exemplar

Papers