Nathan D. Grubaugh

ORCID: 0000-0003-2031-1933

Also affiliated with Yale New Haven Health System

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 79 papers. Top paper: “Sex differences in immune responses that underlie COVID-19 disease outcomes”.

Sex differences in immune responses that underlie COVID-19 disease outcomes

Nature(2020)10.1038/s41586-020-2700-3

N/A

13.9DataRank · unranked

1527 citations

Mallory K. Ellingson, Patrick Wong, Benjamin Israelow, Carolina Lucas, Jon Klein +92 more

Longitudinal analyses reveal immunological misfiring in severe COVID-19

Nature(2020)10.1038/s41586-020-2588-y

N/A

1.2DataRank · unranked

2312 citations

Patrick Wong, Jon Klein, Tiago B. R. Castro, Julio Silva, Maria E. Sundaram +94 more

Measurement of SARS-CoV-2 RNA in wastewater tracks community infection dynamics

Nature Biotechnology(2020)10.1038/s41587-020-0684-z

N/A

1.1DataRank · unranked

1129 citations

Alessandro Zulli, Doug E. Brackney, Nathan D. Grubaugh, Edward H. Kaplan, Arnau Casanovas‐Massana +9 more

Maternal respiratory SARS-CoV-2 infection in pregnancy is associated with a robust inflammatory response at the maternal-fetal interface

Med(2021)10.1016/j.medj.2021.04.016

N/A

0.806DataRank · unranked

215 citations

Arun R. Chavan, Pavithra Vijayakumar, Lina Irshaid, Edward Courchaine, Kristin M. Milano +26 more

Diverse Functional Autoantibodies in Patients with COVID-19

medRxiv(2020)10.1101/2020.12.10.20247205

N/A

0.799DataRank · unranked

205 citations

Tianyang Mao, Jon Klein, Yile Dai, John D. Huck, Feimei Liu +27 more

Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100288

N/A

0.789DataRank · unranked

192 citations

Christopher M. Bartley, Ryan D. Chow, Thomas Ngo, Ruoyi Jiang, Colin R. Zamecnik +41 more

Saliva viral load is a dynamic unifying correlate of COVID-19 severity and mortality

medRxiv(2021)10.1101/2021.01.04.21249236

N/A

0.712DataRank · unranked

114 citations

Carolina Lucas, Maria E. Sundaram, Benjamin Israelow, Patrick Wong, Jon Klein +33 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

Development of an amplicon-based sequencing approach in response to the global emergence of mpox

PLoS Biology(2023)10.1371/journal.pbio.3002151

N/A

0.598DataRank · unranked

53 citations

Chrispin Chaguza, Luc Gagne, Matthew Doucette, Sandra Smole, Erika Buzby +66 more

Tracking Smell Loss to Identify Healthcare Workers with SARS-CoV-2 Infection

medRxiv(2020)10.1101/2020.09.07.20188813

N/A

0.553DataRank · unranked

7 citations

Tuki Attuquayefio, Elizabeth B. White, Fangyong Li, Rachel S. Herz, Theresa L. White +14 more

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

medRxiv(2021)10.1101/2021.08.31.21262938

N/A

0.546DataRank · unranked

37 citations

Alessandro Zulli, Isabel M. Ott, Mary E. Petrone, Tara Alpert, Joseph R. Fauver +21 more

Nasal host response-based screening for undiagnosed respiratory viruses: a pathogen surveillance and detection study

The Lancet Microbe(2022)10.1016/s2666-5247(22)00296-8

N/A

0.520DataRank · unranked

31 citations

Amelia Hanron, Joseph R. Fauver, Jason Bishai, Timothy A. Watkins, Anderson F. Brito +10 more

Longitudinal immunological analyses reveal inflammatory misfiring in severe COVID-19 patients

10.1101/2020.06.23.20138289

N/A

0.510DataRank · unranked

29 citations

Patrick Wong, Jon Klein, Tiago B.R. Castro, Julio Silva, Maria Sundaram +32 more

An AI-powered patient triage platform for future viral outbreaks using COVID-19 as a disease model

Human Genomics(2023)10.1186/s40246-023-00521-4

N/A

0.396DataRank · unranked

13 citations

Reza Aalizadeh, Álvaro J. Santos‐Neto, Wan Ying Tan, Emily A. Davidson, Varvara Nikolopoulou +82 more

SARS-CoV-2-related bat viruses evade human intrinsic immunity but lack efficient transmission capacity

Nature Microbiology(2024)10.1038/s41564-024-01765-z

N/A

0.373DataRank · unranked

11 citations

Mia Madel Alfajaro, Renata B. Filler, Miyu Moriyama, Emma L. Keeler, Zara E. Ranglin +21 more

Acute encephalopathy with elevated CSF inflammatory markers as the initial presentation of COVID-19.

Research Square(2020)10.21203/rs.3.rs-28583/v1

N/A

0.373DataRank · unranked

11 citations

Laura Glick, Chantal B. F. Vogels, Jared Thomas, Jennifer Chiarella, Arnau Casanovas‐Massana +20 more

A new lineage nomenclature to aid genomic surveillance of dengue virus

medRxiv(2024)10.1101/2024.05.16.24307504

N/A

0.360DataRank · unranked

10 citations

Sara Cleemput, Vagner Fonseca, Houriiyah Tegally, Anderson F. Brito, Robert J. Gifford +30 more

Longitudinal immune profiling of a SARS-CoV-2 reinfection in a solid organ transplant recipient

Research Square(2021)10.21203/rs.3.rs-405958/v1

N/A

0.292DataRank · unranked

6 citations

Anderson F. Brito, Paul Trubin, Peiwen Lu, Patrick Wong, Tara Alpert +25 more

Insights into the limited global spread of the immune evasive SARS-CoV-2 variant Mu

medRxiv(2022)10.1101/2022.03.28.22273077

N/A

0.292DataRank · unranked

6 citations

Carolina Lucas, Bridget L. Menasché, Mallery I. Breban, İnci Yıldırım, Melissa Campbell +8 more

North-south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic

medRxiv(2024)10.1101/2024.02.14.24302795

N/A

0.269DataRank · unranked

5 citations

Edwin P. Feliz, Robinson Agramonte, Pedro V. Martinez, Carlos Vergara, Yvonne Imbert +16 more

Monkeypox virus multiplexed PCR amplicon sequencing (PrimalSeq) v4

10.17504/protocols.io.5qpvob1nbl4o/v4

N/A

0.269DataRank · unranked

5 citations

Luc Gagne*, Matthew Doucette, Sandra Smole, Erika Buzby, Joshua Hall +14 more

Zika Virus Non-Structural Protein 1 Antigen-Capture Immunoassay

Preprints.org(2021)10.20944/preprints202108.0130.v1

N/A

0.208DataRank · unranked

3 citations

Jessica N. Hartnett, Russell B. Wilson, Peter C. Kulakosky, Kristian G. Andersen, Argelia Aybar +6 more

Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages

PLoS neglected tropical diseases(2023)10.1371/journal.pntd.0011055

N/A

0.165DataRank · unranked

2 citations

Chantal B. F. Vogels, Ashley Zolfaghari, Sharada Saraf, Raphaëlle Klitting, James Weger-Lucarelli +10 more

Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.01.478673

N/A

0.104DataRank · unranked

1 citations

Chantal B. F. Vogels, Ashley Zolfaghari, Sharada Saraf, Raphaëlle Klitting, James Weger-Lucarelli +10 more

Interactions between seasonal temperature variation and temporal synchrony drive increased arbovirus co-infection incidence

medRxiv(2022)10.1101/2022.05.05.22274743

N/A

0DataRank · unranked

0 citations

Chantal B. F. Vogels, Nathan D. Grubaugh, Gregory D. Ebel, T. Alex Perkins, Sean Cavany +1 more

Toward a global virus genomic surveillance network

Cell Host & Microbe(2023)10.1016/j.chom.2023.03.003

N/A

0DataRank · unranked

119 citations

George Githinji, Chantal B. F. Vogels, Ana I. Bento, Chrispin Chaguza, Christine V. F. Carrington +2 more

Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.100943

N/A

0DataRank · unranked

107 citations

Anne M. Hahn, Mary E. Petrone, Shuntai Zhou, David Ferguson, Mallery I. Breban +21 more

Genomic epidemiology of West Nile virus in Europe

One Health(2023)10.1016/j.onehlt.2023.100664

N/A

0DataRank · unranked

65 citations

Diana Erazo, Arran J. Folly, Nicholas Johnson, Simon Dellicour, Nathan D. Grubaugh +2 more

Leveraging insect-specific viruses to elucidate mosquito population structure and dynamics

PLoS Pathogens(2023)10.1371/journal.ppat.1011588

N/A

0DataRank · unranked

22 citations

Nathan D. Grubaugh, Brian P. Lazzaro, Courtney C. Murdock, Brandon Hollingsworth

Dynamics of eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States

Current Biology(2023)10.1016/j.cub.2023.05.047

N/A

0DataRank · unranked

20 citations

Robert T. Koch, Sean Bialosuknia, Kiet Ngo, Steven D. Zink, Cheri A. Koetzner +23 more

Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2218012120

N/A

0DataRank · unranked

36 citations

Doug E. Brackney, Alan P. Dupuis, Rebecca M. Robich, Joseph R. Fauver, Anderson F. Brito +15 more

Viral kinetics of sequential SARS-CoV-2 infections

Nature Communications(2023)10.1038/s41467-023-41941-z

N/A

0DataRank · unranked

25 citations

James A. Hay, Joseph R. Fauver, Christina Mack, Caroline G. Tai, Deverick J. Anderson +4 more

Routine saliva testing for SARS-CoV-2 in children: Methods for partnering with community childcare centers

Frontiers in Public Health(2023)10.3389/fpubh.2023.1003158

N/A

0DataRank · unranked

13 citations

Hibah Mahwish Askari, Elissa Zirinsky, Sarah Lapidus, Hassan Sheikha, Chikondi Peno +10 more

Survey of white-footed mice (Peromyscus leucopus) in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses

npj Viruses(2023)10.1038/s44298-023-00010-4

N/A

0DataRank · unranked

6 citations

Anne M. Hahn, Nicole M. Feriancek, Matthew Brandt, Renata B. Filler, Zhe Zhao +19 more

Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants

Genome Biology and Evolution(2023)10.1093/gbe/evad052

N/A

0DataRank · unranked

2 citations

Carolina Lucas, Bridget L. Menasché, Mallery I. Breban, İnci Yıldırım, Melissa Campbell +9 more

Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean

medRxiv(2023)10.1101/2023.11.11.23298412

N/A

0DataRank · unranked

10 citations

Verity Hill, Lauren M. Paul, Robert T. Koch, Mallery I. Breban, Chrispin Chaguza +39 more

DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus

medRxiv(2023)10.1101/2023.10.13.23296997

N/A

0DataRank · unranked

9 citations

Verity Hill, Mallery I. Breban, Chrispin Chaguza, Lauren M. Paul, Afeez Sodeinde +24 more

Dynamics of Eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States

medRxiv(2023)10.1101/2023.03.06.23286851

N/A

0DataRank · unranked

2 citations

Robert T. Koch, Sean Bialosuknia, Kiet Ngo, Steven D. Zink, Cheri A. Koetzner +23 more

Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.559030

N/A

0DataRank · unranked

0 citations

Anne M. Hahn, Nicole M. Feriancek, Matthew Brandt, Renata B. Filler, Zhe Zhao +19 more

Contribution of climate change to the spatial expansion of West Nile virus in Europe

Nature Communications(2024)10.1038/s41467-024-45290-3

N/A

0DataRank · unranked

137 citations

Luke Grant, Guillaume Ghisbain, Giovanni Marini, Felipe J. Colón‐González, William Wint +9 more

A new lineage nomenclature to aid genomic surveillance of dengue virus

PLoS Biology(2024)10.1371/journal.pbio.3002834

N/A

0DataRank · unranked

71 citations

Sara Cleemput, James Siqueira Pereira, Robert J. Gifford, Vagner Fonseca, Houriiyah Tegally +36 more

Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean

Nature Communications(2024)10.1038/s41467-024-47774-8

N/A

0DataRank · unranked

50 citations

Verity Hill, Lauren M. Paul, Robert T. Koch, Mallery I. Breban, Chrispin Chaguza +39 more

DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus

BMC Genomics(2024)10.1186/s12864-024-10350-x

N/A

0DataRank · unranked

35 citations

Verity Hill, Mallery I. Breban, Chrispin Chaguza, Lauren M. Paul, Afeez Sodeinde +26 more

Dengue Outbreak Caused by Multiple Virus Serotypes and Lineages, Colombia, 2023–2024

Emerging infectious diseases(2024)10.3201/eid3011.241031

N/A

0DataRank · unranked

13 citations

Daniela Torres-Hernández, Mónica A. Murillo-Ortiz, Diana Dávalos, Pío López, Isabel Cristina Hurtado +5 more

Introduction and Spread of Dengue Virus 3, Florida, USA, May 2022–April 2023

Emerging infectious diseases(2024)10.3201/eid3002.231615

N/A

0DataRank · unranked

22 citations

Andrea Morrison, Gilberto A. Santiago, Kristyna Rysava, Rebecca Zimler, Lea Heberlein +18 more

North–south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic

BMC Infectious Diseases(2024)10.1186/s12879-024-09658-6

N/A

0DataRank · unranked

12 citations

Edwin P. Feliz, Robinson Agramonte, Pedro V. Martinez, Carlos Vergara, Yvonne Imbert +17 more

Intranasal neomycin evokes broad-spectrum antiviral immunity in the upper respiratory tract

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2319566121

N/A

0DataRank · unranked

11 citations

Jooyoung Kim, Mario A. Peña-Hernández, Gabrielee Valle, Miyu Moriyama, Sophia Luyten +38 more

Resurgence of Dengue in the Era of Genomic Surveillance and Vaccines

Annals of Internal Medicine(2024)10.7326/m24-0496

N/A

0DataRank · unranked

6 citations

Nathan D. Grubaugh, Michael Libman, Davidson H. Hamer, Ralph Huits

Tiled Amplicon Sequencing Enables Culture-free Whole-Genome Sequencing of Pathogenic Bacteria From Clinical Specimens

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.19.629550

N/A

0DataRank · unranked

0 citations

Freddy L. Gonzalez, Alice Osmaston, Mallery I. Breban, Isabel Distefano, Candy Leon +20 more

Different Clinical Severity and Outcomes in a Cohort of Patients With Dengue With Warning Signs in an Endemic Latin American City

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf227

N/A

0DataRank · unranked

5 citations

Daniela Torres-Hernández, Mónica A. Murillo-Ortiz, Isabel Cristina Hurtado, Diana Dávalos, Érika Cantor +4 more

The importance of epistasis in the evolution of viral pathogens

Virus Evolution(2025)10.1093/ve/veaf091

N/A

0DataRank · unranked

2 citations

Carolina Díaz Arenas, Nathan D. Grubaugh, C. Brandon Ogbunugafor, Swathi Nachiar Manivannan

Epidemiology and severity risk factors of dengue virus infection during the 2023-2024 outbreak in Colombia

PLoS neglected tropical diseases(2025)10.1371/journal.pntd.0013115

N/A

0DataRank · unranked

2 citations

Nathan D. Grubaugh, Mónica A. Murillo-Ortiz, Isabel Cristina Hurtado, Verity Hill, Mallery I. Breban +6 more

Implications of successive blood feeding on Wolbachia-mediated dengue virus inhibition in Aedes aegypti mosquitoes

Nature Communications(2025)10.1038/s41467-025-62352-2

N/A

0DataRank · unranked

2 citations

Mallery I. Breban, Braiya L. Nolan, Afeez Sodeinde, Isabel M. Ott, Perran A. Ross +6 more

Implications of successive blood feeding on Wolbachia -mediated dengue virus inhibition in Aedes aegypti mosquitoes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.06.636928

N/A

0DataRank · unranked

0 citations

Mallery I. Breban, Braiya L. Nolan, Afeez Sodeinde, Isabel M. Ott, Perran A. Ross +6 more

Standardizing annual dengue intensity reveals global drivers of transmission

medRxiv(2025)10.64898/2025.12.19.25342670

N/A

0DataRank · unranked

0 citations

Rafael Lopes, Yi Ting Chew, Ke Li, Oliver J. Brady, Joshua L. Warren +4 more

2023-24 dengue outbreak in Valle del Cauca, Colombia caused by multiple virus serotypes and lineages

medRxiv(2024)10.1101/2024.07.16.24310413

N/A

0DataRank · unranked

0 citations

Daniela Torres-Hernandez, Mónica A. Murillo-Ortiz, Diana Dávalos, Pio Lopex, Isabel Cristina Hurtado +5 more

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

Nature Communications(2020)10.1038/s41467-020-19122-z

N/A

0DataRank · unranked

128 citations

Sébastian Lequime, Bram Vrancken, Mandev S. Gill, Paul Bastide, Karthik Gangavarapu +12 more

Two Sides of a Coin: a Zika Virus Mutation Selected in Pregnant Rhesus Macaques Promotes Fetal Infection in Mice but at a Cost of Reduced Fitness in Nonpregnant Macaques and Diminished Transmissibility by Vectors

Journal of Virology(2020)10.1128/jvi.01605-20

N/A

0DataRank · unranked

14 citations

Jackson B. Stuart, William Louie, Anil Singapuri, Ana L. Ramírez, Jennifer Watanabe +18 more

Sex differences in immune responses to SARS-CoV-2 that underlie disease outcomes

medRxiv(2020)10.1101/2020.06.06.20123414

N/A

0DataRank · unranked

89 citations

Patrick Wong, Mallory K. Ellingson, Carolina Lucas, Jon Klein, Benjamin Israelow +29 more

Simply saliva: stability of SARS-CoV-2 detection negates the need for expensive collection devices

medRxiv(2020)10.1101/2020.08.03.20165233

N/A

0DataRank · unranked

68 citations

Madison S. Strine, Anne E. Watkins, Maikel Boot, Chaney C. Kalinich, Christina A. Harden +19 more

Two sides of a coin: a Zika virus mutation selected in pregnant rhesus macaques promotes fetal infection in mice but at a cost of reduced fitness in nonpregnant macaques and diminished transmissibility by vectors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.11.247411

N/A

0DataRank · unranked

3 citations

Jackson B. Stuart, William Louie, Anil Singapuri, Ana L. Ramírez, Jennifer Watanabe +18 more

Diverse functional autoantibodies in patients with COVID-19

Nature(2021)10.1038/s41586-021-03631-y

N/A

0DataRank · unranked

992 citations

Tianyang Mao, Jon Klein, Yile Dai, John D. Huck, Jillian R. Jaycox +87 more

COVID-19 one year into the pandemic: from genetics and genomics to therapy, vaccination, and policy

Human Genomics(2021)10.1186/s40246-021-00326-3

N/A

0DataRank · unranked

56 citations

Michela Biancolella, Ruty Mehrian‐Shai, Vito Luigi Colona, Anderson F. Brito, Nathan D. Grubaugh +4 more

Evidence for SARS-CoV-2 Spike Protein in the Urine of COVID-19 Patients

Kidney360(2021)10.34067/kid.0002172021

N/A

0DataRank · unranked

54 citations

Anasuya Pal, J. Gagnon, Sushma Timalsina, Pallavi Singh, Pratap Vydyam +27 more

Emergence of an early SARS-CoV-2 epidemic in the United States

Cell(2021)10.1016/j.cell.2021.07.030

N/A

0DataRank · unranked

52 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more

MOG-associated encephalitis following SARS-COV-2 infection

Multiple Sclerosis and Related Disorders(2021)10.1016/j.msard.2021.102857

N/A

0DataRank · unranked

49 citations

Saleh Alhasan, Chantal B. F. Vogels, Nathan D. Grubaugh, Shelli Farhadian, Erin E. Longbrake +1 more

Tracking smell loss to identify healthcare workers with SARS-CoV-2 infection

PLoS ONE(2021)10.1371/journal.pone.0248025

N/A

0DataRank · unranked

15 citations

Tuki Attuquayefio, Elizabeth B. White, Fangyong Li, Rachel S. Herz, Theresa L. White +15 more

Global disparities in SARS-CoV-2 genomic surveillance

medRxiv(2021)10.1101/2021.08.21.21262393

N/A

0DataRank · unranked

124 citations

Elizaveta Semenova, Gytis Dudas, Gabriel W. Hassler, Chaney C. Kalinich, Moritz U. G. Kraemer +43 more

SARS-CoV-2 infection in pregnancy is associated with robust inflammatory response at the maternal-fetal interface

medRxiv(2021)10.1101/2021.01.25.21250452

N/A

0DataRank · unranked

34 citations

Arun R. Chavan, Pavithra Vijayakumar, Lina Irshaid, Edward Courchaine, Kristin M. Milano +27 more

Emergence of an early SARS-CoV-2 epidemic in the United States

medRxiv(2021)10.1101/2021.02.05.21251235

N/A

0DataRank · unranked

10 citations

Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose +47 more

Case Study: Longitudinal immune profiling of a SARS-CoV-2 reinfection in a solid organ transplant recipient

medRxiv(2021)10.1101/2021.03.24.21253992

N/A

0DataRank · unranked

6 citations

Anderson F. Brito, Paul Trubin, Peiwen Lu, Patrick Wong, Tara Alpert +26 more

Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19

Nature Communications(2022)10.1038/s41467-021-27716-4

N/A

0DataRank · unranked

188 citations

Tomokazu S. Sumida, Nima Nouri, Xiting Yan, Amy Zhao, Victor Gasque +47 more

Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2

Nature Communications(2022)10.1038/s41467-022-30878-4

N/A

0DataRank · unranked

56 citations

Lei Peng, Renata B. Filler, Kazushi Suzuki, Andrew McNamara, Qianqian Lin +14 more

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

Genome biology(2022)10.1186/s13059-022-02805-9

N/A

0DataRank · unranked

55 citations

Alessandro Zulli, Isabel M. Ott, Ioanna Nika, Mart J. van der Lugt, Mary E. Petrone +48 more

Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection

medRxiv(2022)10.1101/2022.06.29.22276868

N/A

0DataRank · unranked

37 citations

Anne M. Hahn, Mary E. Petrone, Shuntai Zhou, David Ferguson, Mallery I. Breban +10 more

Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.14.480449

N/A

0DataRank · unranked

15 citations

Lei Peng, Renata B. Filler, Kazushi Suzuki, Andrew McNamara, Qianqian Lin +14 more

Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus

medRxiv(2022)10.1101/2022.10.14.22280783

N/A

0DataRank · unranked

11 citations

Chrispin Chaguza, Luc Gagne, Matthew Doucette, Sandra Smole, Erika Buzby +66 more

Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.14.512245

N/A

0DataRank · unranked

3 citations

Doug E. Brackney, Alan P. Dupuis, Rebecca M. Robich, Joseph R. Fauver, Anderson F. Brito +15 more

Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1

medRxiv(2022)10.1101/2022.04.25.22274187

N/A

0DataRank · unranked

0 citations

David R. Peaper, Brendan J. Kelly, Frederic D. Bushman, Andrew D. Marques, Hriju Adhikari +18 more