🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Alexander Derry

Chan Zuckerberg Biohub San Francisco

ORCID: 0000-0003-2076-1184
Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 11 papers. Top paper: “Simulating 500 million years of evolution with a language model”.

Simulating 500 million years of evolution with a language model

10.1101/2024.07.01.600583
N/A
0.795DataRank · unranked
199 citations

Roshan Rao, Halil Akin, Nicholas J. Sofroniew, Deniz Oktay, Zeming Lin +20 more

Protein Sequence Design with a Learned Potential

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.06.895466
N/A
0.571DataRank · unranked
44 citations

Raphael R. Eguchi, Irimpan I. Mathews, Carla P. Perez, Alexander Derry, Russ B. Altman +2 more

Unsupervised learning reveals landscape of local structural motifs across protein classes

Bioinformatics(2025)10.1093/bioinformatics/btaf377
N/A
0.165DataRank · unranked
2 citations

Haim Krupkin, Alp Tartici, Russ B. Altman, Alexander Derry

COLLAPSE : A representation learning framework for identification and characterization of protein structural sites

Protein Science(2022)10.1002/pro.4541
N/A
0DataRank · unranked
15 citations

Russ B. Altman, Alexander Derry

COLLAPSE: A representation learning framework for identification and characterization of protein structural sites

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.20.500713
N/A
0DataRank · unranked
4 citations

Russ B. Altman, Alexander Derry

Protein functional site annotation using local structure embeddings

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.13.562298
N/A
0DataRank · unranked
13 citations

Alp Tartici, Russ B. Altman, Alexander Derry

Unsupervised learning reveals landscape of local structural motifs across protein classes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.569990
N/A
0DataRank · unranked
0 citations

Russ B. Altman, Alexander Derry

Prospector Heads: Generalized Feature Attribution for Large Models & Data

PubMed(2024)10.48550/arxiv.2402.11729
N/A
0DataRank · unranked
0 citations

Alexander Derry, Arjun Desai, Neel Guha, Amir-Hossein Karimi, James Zou +4 more

Protein functional site annotation using local structure embeddings

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2513219122
N/A
0DataRank · unranked
7 citations

Alp Tartici, Russ B. Altman, Alexander Derry

Protein sequence design with a learned potential

Nature Communications(2022)10.1038/s41467-022-28313-9
N/A
0DataRank · unranked
175 citations

Raphael R. Eguchi, Irimpan I. Mathews, Carla P. Perez, Alexander Derry, Russ B. Altman +2 more

Homology Modeling of TMPRSS2 Yields Candidate Drugs That May Inhibit Entry of SARS-CoV-2 into Human Cells

ChemRxiv(2020)10.26434/chemrxiv.12009582.v1
N/A
0DataRank · unranked
40 citations

Russ B. Altman, Tianyun Liu, Yu‐Chen Lo, Greg McInnes, Alexander Derry +2 more