Leonardo Collado‐Torres

Also affiliated with Discovery Institute, Johns Hopkins Medicine, L&S Consulting (South Africa), Lieber Institute for Brain Development

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.0Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor

Bioinformatics(2022)10.1093/bioinformatics/btac299

Top 7%

3.1DataRank

Top 7%140 citations

Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado‐Torres, Shila Ghazanfar +4 more

Papers

Driven by 53 papers — median percentile 73. Top paper: “SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor”.

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor

Bioinformatics(2022)10.1093/bioinformatics/btac299

Top 7%

3.1DataRank

Top 7%140 citations

Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado‐Torres, Shila Ghazanfar +4 more

Single-cell multi-cohort dissection of the schizophrenia transcriptome

Science(2024)10.1126/science.adg5136

N/A

1.3DataRank · unranked

125 citations

Shahin Mohammadi, José Dávila-Velderrain, Sivan Subburaju, Daniel Reed Tso, Makayla Hourihan +196 more

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex

Science(2024)10.1126/science.adh1938

Top 18%

1.2DataRank

Top 18%69 citations

Abby Spangler, Nicholas J. Eagles, Kelsey D. Montgomery, Sang Ho Kwon, Boyi Guo +90 more

Massively parallel characterization of regulatory elements in the developing human cortex

Science(2024)10.1126/science.adh0559

N/A

1.2DataRank · unranked

61 citations

Sean Whalen, Marilyn Steyert, Ryan Ziffra, Pawel F. Przytycki, Fumitaka Inoue +197 more

Recounting the FANTOM CAGE-Associated Transcriptome

Genome Research(2020)10.1101/gr.254656.119

Top 22%

0.928DataRank

Top 22%33 citations

Diego F. Sánchez, Leonardo Collado‐Torres, Christopher Wilks, Tejasvi Matam, Wikum Dinalankara +19 more

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

BMC Genomics(2022)10.1186/s12864-022-08601-w

N/A

0.768DataRank · unranked

166 citations

Abby Spangler, Lukas M. Weber, Stephanie C. Page, Stephanie C. Hicks, Andrew E. Jaffe +4 more

Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain

Science(2024)10.1126/science.adh0829

Top 26%

0.765DataRank

Top 26%50 citations

Michael Margolis, Rujia Dai, Pan Zhang, Pawel F. Przytycki, Daniel Vo +95 more

Transcriptomic sex differences in postmortem brain samples from patients with psychiatric disorders

Science Translational Medicine(2024)10.1126/scitranslmed.adh9974

Top 27%

0.733DataRank

Top 27%22 citations

Cuihua Xia, Yi Jiang, Yu Chen, Jiaqi Zhou, Rujia Dai +95 more

Analysis of the caudate nucleus transcriptome in individuals with schizophrenia highlights effects of antipsychotics and new risk genes

Nature Neuroscience(2022)10.1038/s41593-022-01182-7

N/A

0.648DataRank · unranked

74 citations

Qiang Chen, Andrew E. Jaffe, Joshua M. Stolz, Leonardo Collado‐Torres, Louise A. Huuki-Myers +32 more

Genome-wide sequencing-based identification of methylation quantitative trait loci and their role in schizophrenia risk

Nature Communications(2021)10.1038/s41467-021-25517-3

N/A

0.641DataRank · unranked

71 citations

Nicholas J. Eagles, Richard Wilton, Amanda J. Price, Stephen A. Semick, Leonardo Collado‐Torres +9 more

Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets

Genome Biology(2023)10.1186/s13059-023-03123-4

N/A

0.609DataRank · unranked

57 citations

Sang Ho Kwon, Louise A. Huuki-Myers, Leonardo Collado-Torres, Stephanie C. Hicks, Kristen R. Maynard +2 more

Megadepth: efficient coverage quantification for BigWigs and BAMs

Bioinformatics(2021)10.1093/bioinformatics/btab152

N/A

0.598DataRank · unranked

53 citations

Omar Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado‐Torres, Ben Langmead +1 more

Sex affects transcriptional associations with schizophrenia across the dorsolateral prefrontal cortex, hippocampus, and caudate nucleus

Nature Communications(2024)10.1038/s41467-024-48048-z

Top 35%

0.554DataRank

Top 35%18 citations

Ria Arora, Arthur Sant’Anna Feltrin, Geo Pertea, Hunter H. Giles, Joshua M. Stolz +10 more

Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528722

N/A

0.520DataRank · unranked

31 citations

Abby Spangler, Nicholas J. Eagles, Kelsey D. Montgomery, Sang Ho Kwon, Boyi Guo +18 more

Analysis of gene expression in the postmortem brain of neurotypical Black Americans reveals contributions of genetic ancestry

Nature Neuroscience(2024)10.1038/s41593-024-01636-0

N/A

0.505DataRank · unranked

28 citations

Qiang Chen, Nicholas J. Eagles, Louise A. Huuki-Myers, Leonardo Collado‐Torres, Joshua M. Stolz +9 more

IntroVerse: a comprehensive database of introns across human tissues

Nucleic Acids Research(2022)10.1093/nar/gkac1056

Top 39%

0.484DataRank

Top 39%13 citations

Emil K. Gustavsson, David Zhang, Regina Hertfelder Reynolds, Zhongbo Chen, Aine Fairbrother-Browne +5 more

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

eLife(2023)10.7554/elife.84628

N/A

0.434DataRank · unranked

17 citations

Heena R. Divecha, Matthew N. Tran, Sang‐Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

eLife(2024)10.7554/elife.84628.3

N/A

0.434DataRank · unranked

17 citations

Heena R. Divecha, Matthew N. Tran, Sang Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

Spatiotemporal analysis of gene expression in the human dentate gyrus reveals age-associated changes in cellular maturation and neuroinflammation

Cell Reports(2025)10.1016/j.celrep.2025.115300

N/A

0.434DataRank · unranked

17 citations

Madhavi Tippani, Heena R. Divecha, Alexis R. Papariello, Ryan A. Miller, Erik D. Nelson +10 more

Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue

Genome biology(2023)10.1186/s13059-023-03066-w

N/A

0.373DataRank · unranked

11 citations

Kelsey D. Montgomery, Sang‐Ho Kwon, Stephanie C. Page, Stephanie C. Hicks, Kristen R. Maynard +2 more

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.29.440149

N/A

0.373DataRank · unranked

11 citations

Abby Spangler, Lukas M. Weber, Stephanie C. Hicks, Andrew E. Jaffe, Keri Martinowich +3 more

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.28.514241

N/A

0.354DataRank · unranked

5 citations

Heena R. Divecha, Matthew N. Tran, Sang Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

Comparison of gene expression in living and postmortem human brain

medRxiv(2023)10.1101/2023.11.08.23298172

N/A

0.345DataRank · unranked

9 citations

Lambertus Klei, Chunyu Liu, Joel E. Kleinman, Thomas M. Hyde, Daniel H. Geschwind +4 more

Programmatic access to bacterial regulatory networks with regutools

Bioinformatics(2020)10.1093/bioinformatics/btaa575

N/A

0.269DataRank · unranked

5 citations

Carmina Barberena-Jonas, Jesús Emiliano Sotelo-Fonseca, José Alquicira-Hernández, Heladia Salgado, Leonardo Collado‐Torres +2 more

Developmental profile of psychiatric risk associated with voltage-gated cation channel activity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.19.345801

N/A

0.269DataRank · unranked

5 citations

Leonardo Collado‐Torres, Emily E. Burke, Antonio F. Pardiñas, Janet Harwood, Arianna Di Florio +8 more

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.20.688607

Top 59%

0.260DataRank

Top 59%3 citations

Yixing Dong, Ilaria Billato, Peiying Cai, Martin Emons, Samuel Gunz +29 more

lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression

BMC Genomics(2025)10.1186/s12864-025-11508-x

N/A

0.258DataRank · unranked

3 citations

Louise A. Huuki-Myers, Sang Ho Kwon, Leonardo Collado‐Torres, Kristen R. Maynard, Stephanie C. Hicks +1 more

Transcriptomic analysis of the human habenula in schizophrenia

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.26.582081

N/A

0.241DataRank · unranked

4 citations

Bukola Ajanaku, Erik D. Nelson, Renee Garcia-Flores, Nicholas J. Eagles, Kelsey D. Montgomery +17 more

Integrating gene expression and imaging data across Visium capture areas with visiumStitched

BMC Genomics(2024)10.1186/s12864-024-10991-y

N/A

0.241DataRank · unranked

4 citations

Svitlana V. Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A. Miller +5 more

Data-driven Identification of Total RNA Expression Genes (TREGs) for Estimation of RNA Abundance in Heterogeneous Cell Types

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489923

N/A

0.241DataRank · unranked

4 citations

Kelsey D. Montgomery, Sang Ho Kwon, Stephanie C. Page, Stephanie C. Hicks, Kristen R. Maynard +2 more

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

(2023)10.7554/elife.84628.1

N/A

0.241DataRank · unranked

4 citations

Heena R. Divecha, Matthew N. Tran, Sang Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

Widespread methylation quantitative trait loci and their role in schizophrenia risk

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.24.311878

N/A

0.192DataRank · unranked

2 citations

Nicholas J. Eagles, Richard Wilton, Amanda J. Price, Stephen A. Semick, Leonardo Collado‐Torres +8 more

Genetic and environmental contributions to ancestry differences in gene expression in the human brain

Research Square(2023)10.21203/rs.3.rs-2922172/v1

N/A

0.165DataRank · unranked

2 citations

Qiang Chen, Nicholas J. Eagles, Louise A. Huuki-Myers, Leonardo Collado‐Torres, Joshua M. Stolz +8 more

Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex

Research Square(2020)10.21203/rs.2.19747/v1

N/A

0.165DataRank · unranked

2 citations

Amanda J. Price, Richard Wilton, Leonardo Collado‐Torres, Ran Tao, Nicholas J. Eagles +6 more

Integrating gene expression and imaging data across Visium capture areas with visiumStitched

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.08.607222

N/A

0.104DataRank · unranked

1 citations

Svitlana V. Bach, Madhavi Tippani, Prashanthi Ravichandran, Yufeng Du, Ryan A. Miller +5 more

SPEAQeasy: a Scalable Pipeline for Expression Analysis and Quantification for R/Bioconductor-powered RNA-seq analyses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.11.386789

N/A

0.104DataRank · unranked

1 citations

Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise A. Huuki-Myers +7 more

Genetic and environmental contributions to ancestry differences in gene expression in the human brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.28.534458

N/A

0.104DataRank · unranked

1 citations

Qiang Chen, Nicholas J. Eagles, Louise A. Huuki-Myers, Leonardo Collado‐Torres, Joshua M. Stolz +9 more

BDNF-DT and BDNF-AS-DT : Novel Genes in the BDNF locus

medRxiv(2025)10.1101/2025.07.10.25331311

N/A

0DataRank · unranked

0 citations

Giovanna Punzi, Nuri E. Smith, Sreya Mukherjee, Joo Heon Shin, Qiang Chen +10 more

Activity-regulated gene expression across cell types of the mouse hippocampus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.23.517593

N/A

0DataRank · unranked

1 citations

Kristen R. Maynard, Kyndall Nicholas, Matthew N. Tran, Heena R. Divecha, Leonardo Collado‐Torres +3 more

Developmental Profile of Psychiatric Risk Associated With Voltage-Gated Cation Channel Activity

Biological Psychiatry(2021)10.1016/j.biopsych.2021.03.009

N/A

0DataRank · unranked

25 citations

Leonardo Collado‐Torres, Emily E. Burke, Antonio F. Pardiñas, Janet Harwood, Arianna Di Florio +8 more

Activity‐regulated gene expression across cell types of the mouse hippocampus

Hippocampus(2023)10.1002/hipo.23548

N/A

0DataRank · unranked

14 citations

Kristen R. Maynard, Kyndall Nicholas, Matthew N. Tran, Heena R. Divecha, Leonardo Collado‐Torres +3 more

SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses

BMC Bioinformatics(2021)10.1186/s12859-021-04142-3

N/A

0DataRank · unranked

29 citations

Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise A. Huuki-Myers +7 more

Programmatic access to bacterial regulatory networks with regutools

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.29.068551

N/A

0DataRank · unranked

0 citations

Carmina Barberena-Jonas, Jesús Emiliano Sotelo-Fonseca, José Alquicira-Hernández, Heladia Salgado, Leonardo Collado‐Torres +2 more

Splicing accuracy varies across human introns, tissues and age

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.29.534370

N/A

0DataRank · unranked

5 citations

David Zhang, Emil K. Gustavsson, G Rocamora-Perez, Melissa Grant‐Peters, Aine Fairbrother-Browne +10 more

Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single cell RNA-sequencing datasets

arXiv (Cornell University)(2023)10.48550/arxiv.2305.06501

N/A

0DataRank · unranked

4 citations

Sang Ho Kwon, Louise A. Huuki-Myers, Leonardo Collado‐Torres, Stephanie C. Hicks, Kristen R. Maynard +1 more

Author Response: The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

(2023)10.7554/elife.84628.1.sa0

N/A

0DataRank · unranked

0 citations

Heena R. Divecha, Matthew N. Tran, Sang Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

Reviewer #2 (Public Review): The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

(2023)10.7554/elife.84628.2.sa1

N/A

0DataRank · unranked

0 citations

Heena R. Divecha, Matthew N. Tran, Sang Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

(2023)10.7554/elife.84628.2

N/A

0DataRank · unranked

0 citations

Heena R. Divecha, Matthew N. Tran, Sang Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

Author Response: The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

(2023)10.7554/elife.84628.2.sa4

N/A

0DataRank · unranked

0 citations

Heena R. Divecha, Matthew N. Tran, Sang Ho Kwon, Abby Spangler, Kelsey D. Montgomery +10 more

Megadepth: efficient coverage quantification for BigWigs and BAMs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.17.423317

N/A

0DataRank · unranked

5 citations

Omar Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado‐Torres, Ben Langmead +1 more

lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.04.588105

N/A

0DataRank · unranked

2 citations

Louise A. Huuki-Myers, Sang Ho Kwon, Leonardo Collado‐Torres, Kristen R. Maynard, Stephanie C. Hicks +1 more

Splicing accuracy varies across human introns, tissues, age and disease

Nature Communications(2025)10.1038/s41467-024-55607-x

N/A

0DataRank · unranked

22 citations

David Zhang, Emil K. Gustavsson, G Rocamora-Perez, Melissa Grant‐Peters, Aine Fairbrother-Browne +10 more

SynGAP isoforms differentially regulate synaptic plasticity and dendritic development

eLife(2020)10.7554/elife.56273

N/A

0DataRank · unranked

111 citations

Ingie Hong, Timothy R. Gamache, Shaowen Ju, Leonardo Collado‐Torres, Joo Heon Shin +2 more

Leonardo Collado‐Torres

Indexed papers

Top data-sharing exemplar

Papers