🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Blake T. Riley

The Graduate Center, CUNY

ORCID: 0000-0003-2176-0503

Also affiliated with CUNY Advanced Science Research Center

Biochemistry, Genetics and Molecular BiologyMaterials ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps”.

qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.03.280222
N/A
0DataRank · unranked
10 citations

Stephanie A. Wankowicz, Saulo H. P. de Oliveira, Gydo C. P. van Zundert, Daniel W. Hogan, James S. Fraser +3 more

The temperature-dependent conformational ensemble of SARS-CoV-2 main protease (M pro )

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.03.437411
N/A
0DataRank · unranked
19 citations

Blake T. Riley, D. Kumaran, Babak Andi, Martin R. Fuchs, Seán McSweeney +2 more

The temperature-dependent conformational ensemble of SARS-CoV-2 main protease (Mpro)

IUCrJ(2022)10.1107/s2052252522007497
N/A
0DataRank · unranked
59 citations

Blake T. Riley, D. Kumaran, Babak Andi, Martin R. Fuchs, Seán McSweeney +2 more

Automated multiconformer model building for X-ray crystallography and cryo-EM

eLife(2023)10.7554/elife.90606
N/A
0DataRank · unranked
32 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +5 more

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546963
N/A
0DataRank · unranked
13 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Pushed to extremes: distinct effects of high temperature vs. pressure on the structure of an atypical phosphatase

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.02.538097
N/A
0DataRank · unranked
2 citations

Ali Ebrahim, Blake T. Riley, Minyoung Kim, Qingqiu Huang, Aaron D. Finke +2 more

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM

(2023)10.7554/elife.90606.1
N/A
0DataRank · unranked
1 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +4 more

Automated multiconformer model building for X-ray crystallography and cryo-EM

eLife(2024)10.7554/elife.90606.3
N/A
0DataRank · unranked
17 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +5 more

Pushed to extremes: distinct effects of high temperature versus pressure on the structure of STEP

Communications Biology(2024)10.1038/s42003-023-05609-0
N/A
0DataRank · unranked
18 citations

Ali Ebrahim, Blake T. Riley, Minyoung Kim, Qingqiu Huang, Aaron D. Finke +2 more

Structures of human PTP1B variants reveal allosteric sites to target for weight loss therapy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.05.603709
N/A
0DataRank · unranked
7 citations

Virgil A. Woods, Ali Ebrahim, Katherine Lawler, Rebecca Bounds, N Singh +10 more

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X- ray Crystallography and Cryo-EM

eLife(2024)10.7554/elife.90606.2
N/A
0DataRank · unranked
0 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Author response: Uncovering Protein Ensembles: Automated Multiconformer Model Building for X- ray Crystallography and Cryo-EM

(2024)10.7554/elife.90606.2.sa4
N/A
0DataRank · unranked
0 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Allosteric Anti-KLK4 Antibody Development for Targeted Anti-cancer Effects in Ovarian Carcinoma

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169101
N/A
0DataRank · unranked
2 citations

Blake T. Riley, Peter G. Chandler, Ashley M. Buckle, Irit Sagi, Nikolaos A. Afratis

Mapping allosteric rewiring in related protein structures from collections of crystallographic multiconformer models

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.23.655529
N/A
0DataRank · unranked
3 citations

Shivani Sharma, Blake T. Riley, Shakhriyor Djuraev, Y.L.K. Tan, Minyoung Kim +3 more

Structures of human protein tyrosine phosphatase variants reveal targetable allosteric sites

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110852
N/A
0DataRank · unranked
0 citations

Virgil A. Woods, Ali Ebrahim, Katherine Lawler, Rebecca Bounds, Dinesh S. Shah +11 more