Barry Stoddard

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Design of pseudosymmetric protein hetero-oligomers”.

Design of pseudosymmetric protein hetero-oligomers

Nature Communications(2024)10.1038/s41467-024-54913-8

N/A

0.463DataRank · unranked

9 citations

Sangmin Lee, Madison Kennedy, Basile I. M. Wicky, Stella M. Lai, Marius M. Kostelic +9 more

De novo design of protein homodimers containing tunable symmetric protein pockets

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2113400119

N/A

0.457DataRank · unranked

20 citations

Madison Kennedy, Kirsten A. Thompson, Michelle DeWitt, Brian Coventry, Alex Kang +6 more

Immunization with a self-assembling nanoparticle vaccine displaying EBV gH/gL protects humanized mice against lethal viral challenge

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.17.480914

N/A

0.373DataRank · unranked

11 citations

Leah J. Homad, Yu-Hsin Wan, Bibhav Poudel, Brooke Fiala, Andrew J. Borst +15 more

Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.06.425610

N/A

0.104DataRank · unranked

1 citations

Joel Quispe, Yvette A. Luyten, Benjamin E. McGough, Richard Morgan, Barry Stoddard +1 more

Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM

Structure(2021)10.1016/j.str.2021.03.012

N/A

0DataRank · unranked

13 citations

Joel Quispe, Yvette A. Luyten, Benjamin E. McGough, Richard Morgan, Barry Stoddard +1 more

Design of functionalised circular tandem repeat proteins with longer repeat topologies and enhanced subunit contact surfaces

Communications Biology(2021)10.1038/s42003-021-02766-y

N/A

0DataRank · unranked

10 citations

Lindsey Doyle, Betty Shen, Mesfin Gewe, Brittany Takushi, Madison Kennedy +5 more

Identification and characterization of the WYL BrxR protein and its gene as separable regulatory elements of a BREX phage restriction system

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.19.473356

N/A

0DataRank · unranked

3 citations

Deanna Hausman, Juliana C. Young, Lindsey Doyle, Kerilyn M. Higashi, Natalia C. Ubilla-Rodriquez +7 more

Immunization with a self-assembling nanoparticle vaccine displaying EBV gH/gL protects humanized mice against lethal viral challenge

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100658

N/A

0DataRank · unranked

44 citations

Leah J. Homad, Yu-Hsin Wan, Bibhav Poudel, Brooke Fiala, Andrew J. Borst +16 more

De novo design of knotted tandem repeat proteins

Nature Communications(2023)10.1038/s41467-023-42388-y

N/A

0DataRank · unranked

25 citations

Brittany Takushi, Ryan D. Kibler, Lukas F. Milles, Carolina T. Orozco, Jonathan D. Jones +4 more

The structural basis of mRNA recognition and binding by yeast pseudouridine synthase PUS1

PLoS ONE(2023)10.1371/journal.pone.0291267

N/A

0DataRank · unranked

8 citations

Lindsey Doyle, Eric J. Wolf, Nan Dai, Ivan R Corrêa, Erbay Yigit +2 more

Computational design of sequence-specific DNA-binding proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.20.558720

N/A

0DataRank · unranked

28 citations

Robert Pecoraro, Ryan McHugh, Lindsey Doyle, Wei Chen, Olivier Boivin +15 more

Design of four component T=4 tetrahedral, octahedral, and icosahedral protein nanocages through programmed symmetry breaking

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545341

N/A

0DataRank · unranked

5 citations

Ryan D. Kibler, Yang Hsia, Andrew J. Borst, Annika Philomin, Madison Kennedy +3 more

De novo design of energy transfer proteins housing excitonically coupled chlorophyll special pairs

Research Square(2023)10.21203/rs.3.rs-2736786/v1

N/A

0DataRank · unranked

0 citations

Shunzhi Wang, Madison Kennedy, Mariano Curti, George A. Sutherland, Cvetelin Vasilev +25 more

Four-component protein nanocages designed by programmed symmetry breaking

Nature(2024)10.1038/s41586-024-07814-1

N/A

0DataRank · unranked

48 citations

Ryan D. Kibler, Green Ahn, Yang Hsia, Andrew J. Borst, Annika Philomin +5 more

De novo design of proteins housing excitonically coupled chlorophyll special pairs

Nature Chemical Biology(2024)10.1038/s41589-024-01626-0

N/A

0DataRank · unranked

29 citations

Shunzhi Wang, Madison Kennedy, Mariano Curti, George A. Sutherland, Cvetelin Vasilev +26 more

Optimization of Protein Thermostability and Exploitation of Recognition Behavior to Engineer Altered Protein-DNA Recognition

Structure(2020)10.1016/j.str.2020.04.009

N/A

0DataRank · unranked

11 citations

J.P. Hallinan, R. Werther, Dawid Głów, Barry Stoddard, Abigail R. Lambert

Computational design of sequence-specific DNA-binding proteins

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01669-4

N/A

0DataRank · unranked

23 citations

Robert Pecoraro, Ryan McHugh, Lindsey Doyle, Wei Chen, Olivier Boivin +15 more

The novel anti-CRISPR AcrIIA22 relieves DNA torsion in target plasmids and impairs SpyCas9 activity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.28.317578

N/A

0DataRank · unranked

8 citations

Danica T. Schmidtke, R. Werther, Ruben Vazquez-Uribe, Deanna Hausman, Morten Otto Alexander Sommer +4 more

Incorporation of sensing modalities into de novo designed fluorescence-activating proteins

Nature Communications(2021)10.1038/s41467-020-18911-w

N/A

0DataRank · unranked

51 citations

Lindsey Doyle, Justin Daho Lee, Michael Rappleye, Lauren Gagnon, Min Yen Lee +14 more

The novel anti-CRISPR AcrIIA22 relieves DNA torsion in target plasmids and impairs SpyCas9 activity

PLoS Biology(2021)10.1371/journal.pbio.3001428

N/A

0DataRank · unranked

22 citations

Danica T. Schmidtke, R. Werther, Ruben Vazquez-Uribe, Deanna Hausman, Morten Otto Alexander Sommer +4 more