🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Siyuan Ma

Eye & ENT Hospital of Fudan University

ORCID: 0000-0003-2313-6448

Also affiliated with Beijing Institute of Graphic Communication, East China Normal University, Vanderbilt University Medical Center

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 11 papers. Top paper: “Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes”.

Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes

Nature Medicine(2024)10.1038/s41591-024-03067-7
N/A
1.9DataRank · unranked
108 citations

Fenglei Wang, Amrisha Bhosle, Danyue Dong, Raaj S. Mehta, Andrew R. Ghazi +18 more

Multivariable association discovery in population-scale meta-omics studies

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009442
N/A
1.2DataRank · unranked
2502 citations

Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen +15 more

Multivariable Association Discovery in Population-scale Meta-omics Studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.20.427420
N/A
0.923DataRank · unranked
469 citations

Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen +15 more

Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin

Genome biology(2022)10.1186/s13059-022-02753-4
N/A
0.765DataRank · unranked
163 citations

Dmitry Shungin, Himel Mallick, Melanie Schirmer, Long H. Nguyen, Raivo Kolde +5 more

Recent advances in deep learning and language models for studying the microbiome

Frontiers in Genetics(2025)10.3389/fgene.2024.1494474
N/A
0.373DataRank · unranked
11 citations

Yunbi Nam, Lingyao Li, Rebecca A. Deek, Hongzhe Li, Siyuan Ma +1 more

Congestion Enriches Intra-hepatic Macrophages Through Reverse Zonation of CXCL9 in Liver Sinusoidal Endothelial Cells

Cellular and Molecular Gastroenterology and Hepatology(2025)10.1016/j.jcmgh.2025.101475
N/A
0.360DataRank · unranked
10 citations

Nawras W. Habash, Mrunal Dehankar, Nidhi Jalan‐Sakrikar, Shawna A. Cooper, Abid Anwar +15 more

A Statistical Model for Describing and Simulating Microbial Community Profiles

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437146
N/A
0DataRank · unranked
8 citations

Boyu Ren, Himel Mallick, Yo Sup Moon, Emma Schwager, Sagun Maharjan +7 more

The Gut Microbiome and Butyrate Differentiate Clostridioides difficile Colonization and Infection in Children

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf631
N/A
0DataRank · unranked
0 citations

Siyuan Ma, Britton A. Strickland, Mia Cecala, Lisa Zhang, Seth A. Reasoner +6 more

Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome

Journal of Virology(2023)10.1128/jvi.01472-22
N/A
0DataRank · unranked
10 citations

Meghan H. Shilts, Christian Rosas‐Salazar, Vinita Puri, Nadia Fedorova, Rebecca Halpin +6 more

Statistical and computational methods for integrating microbiome, host genomics, and metabolomics data

eLife(2024)10.7554/elife.88956
N/A
0DataRank · unranked
23 citations

Siyuan Ma, James M. Lewis, Hongzhe Li, Rebecca A. Deek

Single-cell profiling demonstrates the combined effect of wheeze phenotype and infant viral infection on airway epithelial development

Science Advances(2025)10.1126/sciadv.adr9995
N/A
0DataRank · unranked
14 citations

Dawn C. Newcomb, Nana-Fatima Haruna, Kaitlin McKernan, Shelby N Kuehnle, Tebeb Gebretsadik +8 more