Debashis Sahoo

Also affiliated with University of California San Diego, Jacobs (United States), National Institute of Plant Genome Research

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.593Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A living organoid biobank of patients with Crohn’s disease reveals molecular subtypes for personalized therapeutics

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101748

Top 33%

0.593DataRank

Top 33%22 citations

Ayden G. Fonseca, Sahar Taheri, Gajanan D. Katkar, Jasper Lee, Priti Maity +16 more

Papers

Driven by 66 papers — median percentile 67. Top paper: “Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19”.

Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19

eLife(2021)10.7554/elife.66417

N/A

3.1DataRank · unranked

136 citations

Mackenzie Fuller, Ayden G. Fonseca, Sahar Taheri, Stella‐Rita Ibeawuchi, Nathan Beutler +16 more

Upregulation of CD47 Is a Host Checkpoint Response to Pathogen Recognition

mBio(2020)10.1128/mbio.01293-20

N/A

1.4DataRank · unranked

41 citations

Laughing Bear Torrez Dulgeroff, Lara Myers, Lamin B. Cham, Katrin D. Mayer-Barber, Andrea C. Bohrer +32 more

Aged skeletal stem cells generate an inflammatory degenerative niche

Nature(2021)10.1038/s41586-021-03795-7

N/A

0.888DataRank · unranked

372 citations

Owen Marecic, Adrian McArdle, Rahul Sinha, Gunsagar S. Gulati, Xinming Tong +23 more

The DNA Glycosylase NEIL2 Suppresses Fusobacterium-Infection-Induced Inflammation and DNA Damage in Colonic Epithelial Cells

Cells(2020)10.3390/cells9091980

N/A

0.604DataRank · unranked

55 citations

Anirban Chakraborty, Amer Ali Abd El‐Hafeez, Aditi Sharma, Ayse Z. Sahan, Wendy Huang +5 more

A living organoid biobank of patients with Crohn’s disease reveals molecular subtypes for personalized therapeutics

Cell Reports Medicine(2024)10.1016/j.xcrm.2024.101748

Top 33%

0.593DataRank

Top 33%22 citations

Ayden G. Fonseca, Sahar Taheri, Gajanan D. Katkar, Jasper Lee, Priti Maity +16 more

Computational Approach to Identifying Universal Macrophage Biomarkers

Frontiers in Physiology(2020)10.3389/fphys.2020.00275

N/A

0.581DataRank · unranked

47 citations

Sahar Taheri, Soumita Das, Pradipta Ghosh, Lawrence S. Prince, Debashis Sahoo +1 more

Hepatocyte Deletion of IGF2 Prevents DNA Damage and Tumor Formation in Hepatocellular Carcinoma

Advanced Science(2022)10.1002/advs.202105120

N/A

0.568DataRank · unranked

43 citations

Manasi Das, Alexis Oberg, Debashis Sahoo, Panyisha Wu, Consuelo Sauceda +6 more

AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas

JCI Insight(2022)10.1172/jci.insight.161334

N/A

0.559DataRank · unranked

16 citations

Vinicius J. Campos, Daniella Vo, Caitlin Guccione, Vanae Goheen-Holland, Courtney Tindle +10 more

Machine learning identifies signatures of macrophage reactivity and tolerance that predict disease outcomes

EBioMedicine(2023)10.1016/j.ebiom.2023.104719

N/A

0.546DataRank · unranked

37 citations

Saptarshi Sinha, Gajanan D. Katkar, Daniella Vo, Sahar Taheri, Dharanidhar Dang +3 more

DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis

Life Science Alliance(2020)10.26508/lsa.202000772

N/A

0.510DataRank · unranked

29 citations

Tianyun Long, Yuxin Li, Brian A. Yee, Benjamin S. Cho, Juan E Hernandez +10 more

Artificial intelligence-rationalized balanced PPARα/γ dual agonism resets dysregulated macrophage processes in inflammatory bowel disease

Communications Biology(2022)10.1038/s42003-022-03168-4

N/A

0.464DataRank · unranked

21 citations

Ibrahim M. Sayed, Mahitha Shree Anandachar, Vanessa Castillo, Eleadah Vidales, Daniel Toobian +9 more

GIV/Girdin, a non-receptor modulator for Gαi/s, regulates spatiotemporal signaling during sperm capacitation and is required for male fertility

eLife(2021)10.7554/elife.69160

N/A

0.455DataRank · unranked

10 citations

Vanessa Castillo, Gajanan D. Katkar, Inmaculada López-Sánchez, Sahar Taheri, Celia R. Espinoza +5 more

Human skeletal development and regeneration are shaped by functional diversity of stem cells across skeletal sites

Cell stem cell(2025)10.1016/j.stem.2025.02.013

N/A

0.442DataRank · unranked

18 citations

Sahar Taheri, Kun Chen, Rahul Sinha, Yuting Wang, Ethan J. Hunt +30 more

GIV•Kindlin Interaction Is Required for Kindlin-Mediated Integrin Recognition and Activation

iScience(2020)10.1016/j.isci.2020.101209

N/A

0.416DataRank · unranked

15 citations

Nicholas A. Kalogriopoulos, Navin Rajapakse, Suchismita Roy, Inmaculada López-Sánchez, Jailal Ablack +3 more

Global Age-Specific Patterns of Cyclic Gene Expression Revealed by Tunicate Transcriptome Atlas

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.08.417055

N/A

0.312DataRank · unranked

7 citations

Aidan Glina, Mark Kowarsky, Chiara Anselmi, Norma Neff, Katherine J. Ishizuka +9 more

Quantitative mRNA expression measurement at home

Scientific Reports(2024)10.1038/s41598-023-49651-8

N/A

0.165DataRank · unranked

2 citations

Sara S. McCoy, Tsering Stobdan, Debashis Sahoo, Sonalisa Pandey

AI-assisted Discovery of an Ethnicity-influenced Driver of Cell Transformation in Esophageal and Gastroesophageal Junction Adenocarcinomas

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.30.478408

N/A

0.114DataRank · unranked

1 citations

Vinicius J. Campos, Daniella Vo, Caitlin Guccione, Vanae Goheen-Holland, Courtney Tindle +10 more

Machine Learning Identifies Signatures of Macrophage Reactivity and Tolerance that Predict Disease Outcomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.27.497783

N/A

0.104DataRank · unranked

1 citations

Saptarshi Sinha, Gajanan D. Katkar, Daniella Vo, Sahar Taheri, Dharanidhar Dang +3 more

SPT6 loss permits the transdifferentiation of keratinocytes into an intestinal fate that resembles Barrett’s metaplasia

iScience(2021)10.1016/j.isci.2021.103121

N/A

0DataRank · unranked

7 citations

Mackenzie Fuller, Courtney Tindle, Mahitha Shree Anandachar, Soumita Das, Debashis Sahoo +2 more

A Microsatellite in the Coding Sequence of HLA-A/B Is a Mutation Hotspot in Colon Cancer With Microsatellite Instability

Gastroenterology(2021)10.1053/j.gastro.2021.10.006

N/A

0DataRank · unranked

2 citations

Arabella Mazzocchi, Paolo Radice, Debashis Sahoo, Chiara Castelli, Piero Dalerba +10 more

COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.28.470269

N/A

0DataRank · unranked

11 citations

Vanessa Castillo, Celia R. Espinoza, Courtney Tindle, Ayden G. Fonseca, Jennifer M. Dan +5 more

An AI-guided signature reveals the nature of the shared proximal pathways of host immune response in MIS-C and Kawasaki disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.11.439347

N/A

0DataRank · unranked

3 citations

Gajanan D. Katkar, Chisato Shimizu, Jihoon Kim, Soni Khandelwal, Adriana H. Tremoulet +6 more

SPT6 loss Permits the Transdifferentiation of Keratinocytes into an Intestinal Fate that Recapitulates Barrett’s Metaplasia

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.06.442930

N/A

0DataRank · unranked

1 citations

Mackenzie Fuller, Courtney Tindle, Mahitha Shree Anandachar, Soumita Das, Debashis Sahoo +2 more

GIV/Girdin, a Non-receptor Modulator for Gαi/s, Regulates Spatiotemporal Signaling during Sperm Capacitation and is Required for Male Fertility

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.06.442927

N/A

0DataRank · unranked

1 citations

Vanessa Castillo, Gajanan D. Katkar, Inmaculada López-Sánchez, Sahar Taheri, Celia R. Espinoza +5 more

Invariant Differential Expression Analysis Reveals Mechanism of Cancer Resistance to Cell Cycle Inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.431607

N/A

0DataRank · unranked

0 citations

Sonalisa Pandey, Ravikanth Danda, R. Ranjith Kumar, S. Maheswari, Vikas Khetan +5 more

AI-guided use of balanced PPARα/γ dual agonist finetunes macrophage responses in inflammatory bowel disease

Research Square(2021)10.21203/rs.3.rs-243294/v1

N/A

0DataRank · unranked

0 citations

Ibrahim M. Sayed, Mahitha Shree Anandachar, Vanessa Castillo, Vidales Eleadah, Daniel Toobian +9 more

An Artificial Intelligence-guided signature reveals the shared host immune response in MIS-C and Kawasaki disease

Nature Communications(2022)10.1038/s41467-022-30357-w

N/A

0DataRank · unranked

88 citations

Gajanan D. Katkar, Chisato Shimizu, Jihoon Kim, Soni Khandelwal, Adriana H. Tremoulet +18 more

COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis

EBioMedicine(2022)10.1016/j.ebiom.2022.104185

N/A

0DataRank · unranked

42 citations

Vanessa Castillo, Celia R. Espinoza, Courtney Tindle, Ayden G. Fonseca, Jennifer M. Dan +5 more

Effects of iron modulation on mesenchymal stem cell-induced drug resistance in estrogen receptor-positive breast cancer

Oncogene(2022)10.1038/s41388-022-02385-9

N/A

0DataRank · unranked

30 citations

Shrila Rajendran, Brock A. Humphries, Alyssa C. Cutter, Ayşe J. Muñiz, Nicholas Ciavattone +12 more

Enhanced mitochondrial fission suppresses signaling and metastasis in triple-negative breast cancer

Breast Cancer Research(2020)10.1186/s13058-020-01301-x

N/A

0DataRank · unranked

83 citations

Alyssa C. Cutter, Johanna M. Buschhaus, Yu‐Chih Chen, Tonela Qyli, Dilrukshika S.W. Palagama +17 more

Boolean implication analysis of single-cell data predicts retinal cell type markers

BMC Bioinformatics(2022)10.1186/s12859-022-04915-4

N/A

0DataRank · unranked

5 citations

Debashis Sahoo, Rohan Subramanian

A Boolean approach for novel hypoxia-related gene discovery

PLoS ONE(2022)10.1371/journal.pone.0273524

N/A

0DataRank · unranked

3 citations

Debashis Sahoo, Gabriel G. Haddad, Tsering Stobdan

Transplantation of wild-type hematopoietic stem and progenitor cells rescue Alzheimer’s disease in a mouse model and highlights the central role of microglia in disease pathogenesis

Research Square(2022)10.21203/rs.3.rs-1602615/v1

N/A

0DataRank · unranked

2 citations

Alexander Silva, Jay Sharma, Jacqueline Nguyen, Donald Pizzo, Debashis Sahoo +2 more

Artificial Intelligence Guided Discovery of Gastric Cancer Continuum

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.05.510975

N/A

0DataRank · unranked

2 citations

Pradipta Ghosh, Debashis Sahoo, Daniella Vo

Rescue of Alzheimer’s disease phenotype in a mouse model by transplantation of wild-type hematopoietic stem and progenitor cells

Cell Reports(2023)10.1016/j.celrep.2023.112956

N/A

0DataRank · unranked

53 citations

Alexander Silva, Jay Sharma, Jacqueline Nguyen, Donald Pizzo, Denise Hinz +3 more

Purification and functional characterization of novel human skeletal stem cell lineages

Nature Protocols(2023)10.1038/s41596-023-00836-5

N/A

0DataRank · unranked

31 citations

Thomas H. Ambrosi, Holly Steininger, Lauren S. Koepke, Yuting Wang, Liming Zhao +17 more

Inverse agonists of retinoic acid receptor/retinoid X receptor signaling as lineage-specific antitumor agents against human adenoid cystic carcinoma

JNCI Journal of the National Cancer Institute(2023)10.1093/jnci/djad062

N/A

0DataRank · unranked

14 citations

Luis Aparicio, Pierangela Palmerini, Junfei Zhao, Luis E. Valencia Salazar, Alexandra Schurer +6 more

Artificial intelligence-guided discovery of gastric cancer continuum

Gastric Cancer(2023)10.1007/s10120-022-01360-3

N/A

0DataRank · unranked

6 citations

Pradipta Ghosh, Debashis Sahoo, Daniella Vo

Identification of a novel gene signature for neuroblastoma differentiation using a Boolean implication network

Genes Chromosomes and Cancer(2023)10.1002/gcc.23124

N/A

0DataRank · unranked

5 citations

Yuchen Huo, Divya Subramonian, Christophe Le Clorennec, Pradipta Ghosh, Debashis Sahoo +1 more

Investigating tumor-associated macrophages and their polarization in colorectal cancer using Boolean implication networks

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.01.551559

N/A

0DataRank · unranked

6 citations

Tirtharaj Dash, Debashis Sahoo, Ekta Dadlani

Data from Genomic and Proteomic Analysis Reveals a Threshold Level of MYC Required for Tumor Maintenance

(2023)10.1158/0008-5472.c.6497661

N/A

0DataRank · unranked

0 citations

Andrew J. Gentles, Sailaja Elchuri, Debashis Sahoo, Yoav Soen, Orr Sharpe +9 more

Macrophages on the run: Exercise balances macrophage polarization for improved health

Molecular Metabolism(2024)10.1016/j.molmet.2024.102058

N/A

0DataRank · unranked

27 citations

Andrew D. McCulloch, Debashis Sahoo, Yotam Voskoboynik

C1QA is an invariant biomarker for tissue macrophages

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.26.577475

N/A

0DataRank · unranked

13 citations

Haocheng Yu, Sonalisa Pandey, Bud Mishra, Debashis Sahoo, Amir Horowitz

Macrophage Polarizations in the Placenta and Lung are Associated with Bronchopulmonary Dysplasia

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.26.577443

N/A

0DataRank · unranked

2 citations

Abhineet Sharma, Sarah Lazar, Sonalisa Pandey, Mana M. Parast, Louise C. Laurent +3 more

Bronchopulmonary dysplasia: signatures of monocyte-macrophage reactivity and tolerance define novel placenta-lung endotypes

Pediatric Research(2025)10.1038/s41390-025-04025-w

N/A

0DataRank · unranked

4 citations

Abhineet M. Sharma, Sarah Lazar, Sonalisa Pandey, Mana M. Parast, Louise C. Laurent +3 more

Germline stem cell isolation, lineage tracing, and aging in a protochordate

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.31.673173

N/A

0DataRank · unranked

3 citations

Chiara Anselmi, Katherine J. Ishizuka, Tal Gordon, Yotam Voskoboynik, Erin McGeever +16 more

The E2F4 transcriptional repressor is a key mechanistic regulator of colon cancer resistance to irinotecan (CPT-11)

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.22.633435

N/A

0DataRank · unranked

2 citations

Yong Fuga Li, Sanjay Koul, Junko Mukohyama, Luis E. Valencia Salazar, Taichi Isobe +6 more

Boolean Network Modeling Identifies Cognitive Resilience in the First Murine Model of Asymptomatic Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.11.659207

N/A

0DataRank · unranked

0 citations

Sahar Taheri, Satadeepa Kal, Subhash C. Sinha, Brian P. Head, Sushil K. Mahata +2 more

Upregulation of BMI1-suppressor miRNAs (miR-200c, miR-203) during terminal differentiation of colon epithelial cells

Journal of Gastroenterology(2022)10.1007/s00535-022-01865-9

N/A

0DataRank · unranked

8 citations

Junko Mukohyama, Sanjay Koul, Takanori Hayashi, Michael E. Rothenberg, Masao Maeda +13 more

Haematopoietic stem cell-dependent Notch transcription is mediated by p53 through the Histone chaperone Supt16h

Nature Cell Biology(2020)10.1038/s41556-020-00604-7

N/A

0DataRank · unranked

17 citations

Hyemin Song, Eunjin Ryu, Aditya Saxena, Eun Sun Kim, Jennifer E. Manegold +16 more

The stress polarity signaling (SPS) pathway serves as a marker and a target in the leaky gut barrier: implications in aging and cancer

Life Science Alliance(2020)10.26508/lsa.201900481

N/A

0DataRank · unranked

39 citations

Lee Swanson, Ibrahim M. Sayed, Yash Mittal, Blaze B. C. Lim, Stella‐Rita Ibeawuchi +5 more

GIV/Girdin and Exo70 Collaboratively Regulate the Mammalian Polarized Exocytic Machinery

iScience(2020)10.1016/j.isci.2020.101246

N/A

0DataRank · unranked

4 citations

Navin Rajapakse, I‐Chung Lo, Peter Novick, Debashis Sahoo, Pradipta Ghosh +1 more

Adult Stem Cell-derived Complete Lung Organoid Models Emulate Lung Disease in COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.17.344002

N/A

0DataRank · unranked

37 citations

Mackenzie Fuller, Ayden G. Fonseca, Sahar Taheri, Stella‐Rita Ibeawuchi, Nathan Beutler +16 more

AI-guided discovery of the invariant host response to viral pandemics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.21.305698

N/A

0DataRank · unranked

12 citations

Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo +17 more

The immunosuppression of macrophages underlies the cardioprotective effects of catestatin (CST)

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.12.092254

N/A

0DataRank · unranked

6 citations

Kechun Tang, Ennio Avolio, Jan M. Schilling, Teresa Pasqua, Matthew A. Liu +17 more

E-cigarettes compromise the gut barrier and trigger gut inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.29.227348

N/A

0DataRank · unranked

5 citations

Jasper Lee, Ayden G. Fonseca, Alexander Moshensky, Taha Kothari, Ibrahim M. Sayed +8 more

Evolution of Modularity, Interactome and Functions of GIV/Girdin (CCDC88A) from Invertebrates to Vertebrates

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.28.317172

N/A

0DataRank · unranked

0 citations

Amer Ali Abd El‐Hafeez, Suchismita Roy, Tony Ngo, Navin Rajapakse, Julie Choi +7 more

Boolean Implication Analysis Unveils Candidate Universal Relationships in Microbiome Data

Research Square(2020)10.21203/rs.3.rs-65519/v1

N/A

0DataRank · unranked

0 citations

Shayal Charisma Singh, Sara Safa, Debashis Sahoo, Daniella Vo

Boolean Implication Analysis Unveils Candidate Universal Relationships in Microbiome Data

Research Square(2020)10.21203/rs.3.rs-65519/v2

N/A

0DataRank · unranked

0 citations

Shayal Charisma Singh, Sara Safa, Debashis Sahoo, Daniella Vo

Drug repurposing screens identify chemical entities for the development of COVID-19 interventions

Nature Communications(2021)10.1038/s41467-021-23328-0

N/A

0DataRank · unranked

130 citations

Nathan Beutler, Karen C. Wolff, Melanie G. Kirkpatrick, Emily Chen, Tu-Trinh Nguyen +27 more

Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease

Nature Communications(2021)10.1038/s41467-021-24470-5

N/A

0DataRank · unranked

84 citations

Lee Swanson, Ibrahim M. Sayed, Gajanan D. Katkar, Stella-Rita Ibeawuchi, Yash Mittal +9 more

E-cigarettes compromise the gut barrier and trigger inflammation

iScience(2021)10.1016/j.isci.2021.102035

N/A

0DataRank · unranked

83 citations

Jasper Lee, Ayden G. Fonseca, Alexander Moshensky, Taha Kothari, Ibrahim M. Sayed +8 more

AI-guided discovery of the invariant host response to viral pandemics

EBioMedicine(2021)10.1016/j.ebiom.2021.103390

N/A

0DataRank · unranked

54 citations

Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo +17 more

A zebrafish model of granulin deficiency reveals essential roles in myeloid cell differentiation

Blood Advances(2021)10.1182/bloodadvances.2020003096

N/A

0DataRank · unranked

28 citations

Oksana Fursova, Xiaoyi Cheng, Elizabeth Snella, Abbigail McCune, Liangdao Li +7 more

Isolation and characterization of human embryonic stem cell-derived heart field-specific cardiomyocytes unravels new insights into their transcriptional and electrophysiological profiles

Cardiovascular Research(2021)10.1093/cvr/cvab102

N/A

0DataRank · unranked

23 citations

J Engel, Ngoc B. Nguyen, Rhys J.P. Skelton, William B. Gilmore, Rong Qiao +5 more

A long isoform of GIV/Girdin contains a PDZ-binding module that regulates localization and G-protein binding

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100493

N/A

0DataRank · unranked

11 citations

Amer Ali Abd El‐Hafeez, Suchismita Roy, Tony Ngo, Navin Rajapakse, Julie Choi +7 more

Debashis Sahoo

Indexed papers

Top data-sharing exemplar

Papers