Henry van den Bedem

Also affiliated with Universidad Católica de Santa Fe, Expedition Technology (United States)

Materials ScienceBiochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 20 papers. Top paper: “Ligand binding remodels protein side-chain conformational heterogeneity”.

Ligand binding remodels protein side-chain conformational heterogeneity

eLife(2022)10.7554/elife.74114

N/A

0.698DataRank · unranked

104 citations

Saulo H de Oliveira, Daniel W Hogan, Henry van den Bedem, James S. Fraser, Stephanie A. Wankowicz

Expanding automated multiconformer ligand modeling to macrocycles and fragments

eLife(2025)10.7554/elife.103797

N/A

0.360DataRank · unranked

10 citations

Nathaniel Echols, G.J. Correy, Priya Jaishankar, Takaya Togo, Adam R. Renslo +4 more

SARS‐CoV ‐2 main protease mutation analysis via a kinematic method

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26543

N/A

0.241DataRank · unranked

4 citations

Sigrid Leyendecker, Henry van den Bedem, Xiyu Chen

Reproducibility of protein X-ray diffuse scattering and potential utility for modeling atomic displacement parameters

Insecta mundi(2021)10.1101/2021.01.24.428002

N/A

0.165DataRank · unranked

2 citations

Medhanjali Dasgupta, Frédéric Poitevin, Irimpan I. Mathews, Henry van den Bedem, Michael E. Wall +3 more

Author Correction: AI is a viable alternative to high throughput screening: a 318-target study

Scientific Reports(2024)10.1038/s41598-024-70321-w

N/A

0.165DataRank · unranked

2 citations

Izhar Wallach, Denzil Bernard, Kong T. Nguyen, Gregory Ho, Adrian R. Morrison +95 more

Expanding automated multiconformer ligand modeling to macrocycles and fragments

eLife(2025)10.7554/elife.103797.3

N/A

0.165DataRank · unranked

2 citations

Nathaniel Echols, G.J. Correy, Priyadarshini Jaishankar, Takaya Togo, Adam R. Renslo +4 more

Expanding Automated Multiconformer Ligand Modeling to Macrocycles and Fragments

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.20.613996

N/A

0.104DataRank · unranked

1 citations

Nathaniel Echols, G.J. Correy, Priya Jaishankar, Takaya Togo, Adam R. Renslo +4 more

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM

(2023)10.7554/elife.90606.1

N/A

0.104DataRank · unranked

1 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +4 more

Automated multiconformer model building for X-ray crystallography and cryo-EM

eLife(2024)10.7554/elife.90606.3

N/A

0DataRank · unranked

17 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +5 more

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X- ray Crystallography and Cryo-EM

eLife(2024)10.7554/elife.90606.2

N/A

0DataRank · unranked

0 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Author response: Uncovering Protein Ensembles: Automated Multiconformer Model Building for X- ray Crystallography and Cryo-EM

(2024)10.7554/elife.90606.2.sa4

N/A

0DataRank · unranked

0 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Expanding Automated Multiconformer Ligand Modeling to Macrocycles and Fragments

eLife(2025)10.7554/elife.103797.2

N/A

0DataRank · unranked

0 citations

Nathaniel Echols, G.J. Correy, Priya Jaishankar, Takaya Togo, Adam R. Renslo +4 more

Discovery of a cryptic pocket in the AI-predicted structure of PPM1D phosphatase explains the binding site and potency of its allosteric inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.22.533829

N/A

0DataRank · unranked

3 citations

Saulo De Oliveira, Aram Davtyan, Tigran M. Abramyan, Gregory R. Bowman, Henry van den Bedem +1 more

qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.03.280222

N/A

0DataRank · unranked

10 citations

Stephanie A. Wankowicz, Saulo H. P. de Oliveira, Gydo C. P. van Zundert, Daniel W. Hogan, James S. Fraser +3 more

Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters

Structural Dynamics(2021)10.1063/4.0000087

N/A

0DataRank · unranked

8 citations

Medhanjali Dasgupta, Frédéric Poitevin, Irimpan I. Mathews, Henry van den Bedem, Michael E. Wall +3 more

Ligand binding remodels protein side chain conformational heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.21.461269

N/A

0DataRank · unranked

11 citations

Saulo H. P. de Oliveira, Daniel W. Hogan, Henry van den Bedem, James S. Fraser, Stephanie A. Wankowicz

Automated multiconformer model building for X-ray crystallography and cryo-EM

eLife(2023)10.7554/elife.90606

N/A

0DataRank · unranked

32 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Daniel W. Hogan +5 more

Discovery of a cryptic pocket in the AI-predicted structure of PPM1D phosphatase explains the binding site and potency of its allosteric inhibitors

Frontiers in Molecular Biosciences(2023)10.3389/fmolb.2023.1171143

N/A

0DataRank · unranked

23 citations

Saulo De Oliveira, Aram Davtyan, Tigran M. Abramyan, Gregory R. Bowman, Henry van den Bedem +1 more

Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546963

N/A

0DataRank · unranked

13 citations

Ashraya Ravikumar, Shivani Sharma, Blake T. Riley, Akshay Raju, Jessica Flowers +5 more

Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals

IUCrJ(2020)10.1107/s205225252000072x

N/A

0DataRank · unranked

50 citations

I.D. Young, Raymond G. Sierra, Aaron S. Brewster, Michael W. Martynowycz, Eriko Nango +33 more