Christophe Fraser

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.0Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Evaluation of Phylogenetic Methods for Inferring the Direction of Human Immunodeficiency Virus (HIV) Transmission: HIV Prevention Trials Network (HPTN) 052

Clinical Infectious Diseases(2020)10.1093/cid/ciz1247

Top 16%

1.3DataRank

Top 16%34 citations

Chris Wymant, Oliver Laeyendecker, M. Kate Grabowski, Matthew Hall, Sarah E. Hudelson +18 more

Papers

Driven by 43 papers — median percentile 36. Top paper: “Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1”.

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Science(2023)10.1126/science.adg6605

N/A

1.3DataRank · unranked

70 citations

John T. McCrone, Ben Lambert, Sumali Bajaj, Rhys Inward, Paolo Bosetti +35 more

Evaluation of Phylogenetic Methods for Inferring the Direction of Human Immunodeficiency Virus (HIV) Transmission: HIV Prevention Trials Network (HPTN) 052

Clinical Infectious Diseases(2020)10.1093/cid/ciz1247

Top 16%

1.3DataRank

Top 16%34 citations

Chris Wymant, Oliver Laeyendecker, M. Kate Grabowski, Matthew Hall, Sarah E. Hudelson +18 more

Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial – BCPP/Ya Tsie trial

eLife(2022)10.7554/elife.72657

N/A

1.2DataRank · unranked

33 citations

Yinfeng Zhang, Tanya Golubchik, Victor DeGruttola, Eric Tchetgen Tchetgen, Vladimir Novitsky +12 more

Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa276

Top 28%

0.704DataRank

Top 28%17 citations

Melissa Zahralban-Steele, Sikhulile Moyo, Tapiwa Nkhisang, Dorcas Maruapula, Mary Fran McLane +45 more

Inferring pandemic growth rates from sequence data

Journal of The Royal Society Interface(2012)10.1098/rsif.2011.0850

N/A

0.590DataRank · unranked

50 citations

Neil M. Ferguson, Christophe Fraser, Eric de Silva

Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae

PLoS Biology(2020)10.1371/journal.pbio.3000878

N/A

0.574DataRank · unranked

45 citations

Pamela P. Martinez, Brian Arnold, Xueting Qiu, Lindsay R. Grant, Jukka Corander +11 more

Cost and cost-effectiveness of a universal HIV testing and treatment intervention in Zambia and South Africa: evidence and projections from the HPTN 071 (PopART) trial

The Lancet Global Health(2021)10.1016/s2214-109x(21)00034-6

N/A

0.510DataRank · unranked

29 citations

William J. M. Probert, Rafael Sauter, Lawrence Mwenge, Surya Singh, Sarah Kanema +19 more

Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa352

N/A

0.483DataRank · unranked

24 citations

David Bonsall, Vanessa Cummings, Rory Bowden, Tanya Golubchik, Mariateresa de Cesare +12 more

High prevalence of integrase mutation L74I in West African HIV-1 subtypes prior to integrase inhibitor treatment

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa033

N/A

0.470DataRank · unranked

22 citations

Steven A. Kemp, Rawlings Datir, Fati Murtala-Ibrahim, Ahmad Aliyu, Vivian Kwaghe +13 more

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009301

N/A

0.442DataRank · unranked

18 citations

Anne Cori, William J. M. Probert, Rafael Sauter, Robert Hinch, Sarah Fidler +10 more

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1

Journal of Antimicrobial Chemotherapy(2023)10.1093/jac/dkac430

N/A

0.442DataRank · unranked

18 citations

Tom Loosli, Maryam Zaheri, Paul Frischknecht, Michael Huber, Katharina Kusejko +19 more

HIV drug resistance during antiretroviral therapy scale-up in Uganda, 2012–19: a population-based, longitudinal study

The Lancet Microbe(2025)10.1016/j.lanmic.2025.101218

N/A

0.208DataRank · unranked

3 citations

Steven J. Reynolds, Brian Foley, Fred Nalugoda, Thomas C. Quinn, Steven A. Kemp +64 more

Projected outcomes of universal testing and treatment in a generalised HIV epidemic in Zambia and South Africa (the HPTN 071 [PopART] trial): a modelling study

The Lancet HIV(2022)10.1016/s2352-3018(22)00259-4

N/A

0DataRank · unranked

10 citations

Rafael Sauter, Michael Pickles, Anne Cori, Nomtha Bell‐Mandla, Justin Bwalya +56 more

HIV-phyloTSI: Subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data

medRxiv(2022)10.1101/2022.05.15.22275117

N/A

0DataRank · unranked

9 citations

Lucie Abeler‐Dörner, Matthew Hall, Chris Wymant, David Bonsall, George MacIntyre-Cockett +44 more

Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda

Nature Microbiology(2023)10.1038/s41564-023-01530-8

N/A

0DataRank · unranked

27 citations

Andrea Brizzi, Ronald M. Galiwango, Robert Ssekubugu, Yu Chen, Xiaoyue Xi +31 more

Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort

Journal of Antimicrobial Chemotherapy(2023)10.1093/jac/dkad195

N/A

0DataRank · unranked

26 citations

Ibrahim Musa Kida, Umar Abdullahi Maina, Amina Husaini Ibrahim, James Mshelia, Haruna Wisso +47 more

Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study

The Lancet Microbe(2023)10.1016/s2666-5247(23)00220-3

N/A

0DataRank · unranked

15 citations

Tanya Golubchik, David Bonsall, Lucie Abeler‐Dörner, Mohammed Limbada, Barry Kosloff +81 more

Population dynamics of HIV drug resistance during treatment scale-up in Uganda: a population-based longitudinal study

medRxiv(2023)10.1101/2023.10.14.23297021

N/A

0DataRank · unranked

4 citations

Steven J. Reynolds, Brian Foley, Fred Nalugoda, Thomas C. Quinn, Steven A. Kemp +14 more

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

UNC Libraries(2023)10.17615/qgaw-2t47

Top 100%

0DataRank

Top 100%0 citations

Pontiano Kaleebu, Tom Quinn, Deogratius Ssemwanga, Paul Kellam, A.J. Leigh Brown +29 more

Associations between HIV stigma and health-related quality-of-life among people living with HIV: cross-sectional analysis of data from HPTN 071 (PopART)

Scientific Reports(2024)10.1038/s41598-024-63216-3

N/A

0DataRank · unranked

9 citations

Katherine Davis, Julius Ohrnberger, Michael Pickles, Simon Gregson, Ranjeeta Thomas +58 more

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study

Virus Evolution(2024)10.1093/ve/veae065

N/A

0DataRank · unranked

4 citations

Godfrey Kigozi, Michael A. Martin, Ronald M. Galiwango, Thomas C. Quinn, Andrew D. Redd +14 more

Increasing intra- and inter-subtype HIV diversity despite declining HIV incidence in Uganda

medRxiv(2024)10.1101/2024.03.14.24303990

N/A

0DataRank · unranked

2 citations

Godfrey Kigozi, Michael A. Martin, Ronald M. Galiwango, Thomas C. Quinn, Andrew D. Redd +14 more

Artificial intelligence for modelling infectious disease epidemics

Nature(2025)10.1038/s41586-024-08564-w

N/A

0DataRank · unranked

133 citations

Joseph L.-H. Tsui, Serina Chang, Spyros Lytras, Mark P. Khurana, Samantha Vanderslott +36 more

Large connected components in sexual networks and their role in HIV transmission in Sub-Saharan Africa: A model-based analysis of HPTN 071(PopART) data

Journal of Theoretical Biology(2025)10.1016/j.jtbi.2025.112218

N/A

0DataRank · unranked

3 citations

William J. M. Probert, Michael Pickles, Anne Cori, Robert Hinch, Luca Ferretti +10 more

Patterns of HIV-1 viral load suppression and drug resistance during the dolutegravir transition: a population-based longitudinal study

medRxiv(2025)10.1101/2025.09.01.25334862

N/A

0DataRank · unranked

1 citations

Alexandra Blenkinsop, Michelle Moffa, Steven J. Reynolds, Fred Nalugoda, Thomas C. Quinn +19 more

Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study

UNC Libraries(2025)10.17615/9yce-ba10

N/A

0DataRank · unranked

0 citations

Ab Schaap, Musonda Simwinga, Matthew Hall, David Burns, PANGEA Consortium +20 more

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

Science Advances(2020)10.1126/sciadv.aaz6137

N/A

0DataRank · unranked

29 citations

Claire Chewapreecha, John A. Lees, William P. Hanage, Marc Lipsitch, Nicholas J. Croucher +5 more

The age and sex dynamics of heterosexual HIV transmission in Zambia: an HPTN 071 (PopART) phylogenetic and modelling study

eLife(2025)10.1101/2025.05.02.25326873

N/A

0DataRank · unranked

0 citations

William J. M. Probert, Lucie Abeler‐Dörner, Chris Wymant, Francesco Di Lauro, Xiayoue Xi +20 more

Author response: The age and sex dynamics of heterosexual HIV transmission in Zambia: an HPTN 071 (PopART) phylogenetic and modelling study

(2025)10.7554/elife.107082.1.sa0

N/A

0DataRank · unranked

0 citations

William J. M. Probert, Lucie Abeler‐Dörner, Chris Wymant, Francesco Di Lauro, Xiayoue Xi +21 more

Reviewer #1 (Public review): The age and sex dynamics of heterosexual HIV transmission in Zambia: an HPTN 071 (PopART) phylogenetic and modelling study

(2025)10.7554/elife.107082.1.sa1

N/A

0DataRank · unranked

0 citations

William Probert, Lucie Abeler-Dörner, Chris Wymant, Francesco di Lauro, Xiayoue Xi +22 more

The genetic architecture of HIV-1 virulence

Virus Evolution(2025)10.1093/ve/veaf057

Top 100%

0DataRank

Top 100%0 citations

Chris Wymant, Matthew Hall, Robert A. Power, Tanya Golubchik, Astrid Gall +28 more

Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data

PLoS Pathogens(2025)10.1371/journal.ppat.1013065

N/A

0DataRank · unranked

0 citations

Andrea Brizzi, Xiaoyue Xi, Ronald M. Galiwango, Sikhulile Moyo, Deogratius Ssemwanga +14 more

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

Virus Evolution(2020)10.1093/ve/veaa004

N/A

0DataRank · unranked

26 citations

Emma B. Hodcroft, Deogratius Ssemwanga, John M. Kitayimbwa, Gonzalo Yebra, Luis Roger Esquivel Gomez +17 more

Phylogenetic Studies of Transmission Dynamics in Generalized HIV Epidemics: An Essential Tool Where the Burden is Greatest?

UCL Discovery (University College London)(2020)10.17615/757h-rh72

N/A

0DataRank · unranked

4 citations

Ann M. Dennis, Christophe Fraser, Myron S. Cohen, Joshua T. Herbeck, Paul Kellam +3 more

Within-host genomics of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.118992

N/A

0DataRank · unranked

34 citations

Matthew Hall, Luca Ferretti, Mariateresa de Cesare, George MacIntyre-Cockett, Amy Trebes +30 more

Epidemiological dynamics of bacteriocin competition and antibiotic resistance

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.23.351684

N/A

0DataRank · unranked

2 citations

Nicholas J. Croucher, François Blanquart, Christophe Fraser, Sonja Lehtinen

HIV Treatment as Prevention: Debate and Commentary—Will Early Infection Compromise Treatment-as-Prevention Strategies?

UNC Libraries(2020)10.17615/b7f1-rd89

N/A

0DataRank · unranked

0 citations

Christopher Dye, Brian Williams, Myron S. Cohen, Christophe Fraser, William C. Miller +1 more

Clinical and public health implications of acute and early HIV detection and treatment: a scoping review

UNC Libraries(2020)10.17615/8g83-g984

N/A

0DataRank · unranked

0 citations

Christopher D. Pilcher, Joseph D. Tucker, Meg Doherty, Sarah E. Rutstein, Sarah Fidler +8 more

HIV treatment as prevention: Debate and commentary-will early infection compromise treatment-as-prevention strategies?

UNC Libraries(2020)10.17615/s0wc-f607

N/A

0DataRank · unranked

0 citations

Brian Williams, Christophe Fraser, William C. Miller, Kimberly A. Powers, Myron S. Cohen +1 more

SARS-CoV-2 within-host diversity and transmission

Science(2021)10.1126/science.abg0821

N/A

0DataRank · unranked

434 citations

Matthew Hall, Luca Ferretti, Mariateresa de Cesare, George MacIntyre-Cockett, Amy Trebes +32 more

Age patterns of HIV incidence in eastern and southern Africa: a modelling analysis of observational population-based cohort studies

The Lancet HIV(2021)10.1016/s2352-3018(21)00069-2

N/A

0DataRank · unranked

90 citations

Anne Cori, Georges Reniers, Milly Marston, Clara Calvert, Amelia C. Crampin +19 more

Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial – BCPP/ Ya Tsie trial

medRxiv(2021)10.1101/2021.06.19.21259186

N/A

0DataRank · unranked

2 citations

Yinfeng Zhang, Tanya Golubchik, Victor De Gruttola, Eric Tchetgen Tchetgen, Vlad Novitsky +12 more

Epidemiological dynamics of bacteriocin competition and antibiotic resistance

Proceedings of the Royal Society B Biological Sciences(2022)10.1098/rspb.2022.1197

N/A

0DataRank · unranked

17 citations

Nicholas J. Croucher, François Blanquart, Christophe Fraser, Sonja Lehtinen

Christophe Fraser

Indexed papers

Top data-sharing exemplar

Papers