Mingyao Li

Also affiliated with University of Pennsylvania

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.7Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis

Arteriosclerosis Thrombosis and Vascular Biology(2024)10.1161/atvbaha.123.320524

Top 12%

1.7DataRank

Top 12%97 citations

Hanying Yan, Chenyi Xue, Lucie Y. Zhu, Eunyoung Kim, Thomas Mawson +12 more

Papers

Driven by 51 papers — median percentile 88. Top paper: “Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human”.

Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human

Circulation(2020)10.1161/circulationaha.120.048378

N/A

8.9DataRank · unranked

636 citations

Chenyi Xue, Benjamin J. Auerbach, Jiaxin Fan, Alexander C. Bashore, Jian Cui +17 more

Enhanced Statistical Tests for GWAS in Admixed Populations: Assessment using African Americans from CARe and a Breast Cancer Consortium

PLoS Genetics(2011)10.1371/journal.pgen.1001371

N/A

5.4DataRank · unranked

140 citations

Noah Zaitlen, Guillaume Lettre, Gary K. Chen, Arti Tandon, W. H. Linda Kao +40 more

LIQA: long-read isoform quantification and analysis

Genome biology(2021)10.1186/s13059-021-02399-8

N/A

2.7DataRank · unranked

89 citations

Fang Li, Xuelian Chen, Jiang F. Zhong, Mingyao Li, Kai Wang +1 more

ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing

PLoS Genetics(2020)10.1371/journal.pgen.1008786

N/A

2.2DataRank · unranked

92 citations

Jian Hu, Chenyi Xue, Hanrui Zhang, Katalin Suszták, Muredach P. Reilly +3 more

High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis

Arteriosclerosis Thrombosis and Vascular Biology(2024)10.1161/atvbaha.123.320524

Top 12%

1.7DataRank

Top 12%97 citations

Hanying Yan, Chenyi Xue, Lucie Y. Zhu, Eunyoung Kim, Thomas Mawson +12 more

PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

Genome Research(2007)10.1101/gr.6861907

N/A

1.1DataRank · unranked

1896 citations

Mingyao Li, Dexter Hadley, Rui Liu, Joseph Glessner, Struan F.A. Grant +5 more

Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease

Science(2018)10.1126/science.aar2131

N/A

1.1DataRank · unranked

1140 citations

Rojesh Shrestha, Chengxiang Qiu, Ayano Kondo, Shizheng Huang, Max Werth +4 more

SAVER: gene expression recovery for single-cell RNA sequencing

Nature Methods(2018)10.1038/s41592-018-0033-z

N/A

1.0DataRank · unranked

851 citations

Jingshu Wang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, Roberto Bonasio +7 more

APOE and TREM2 regulate amyloid-responsive microglia in Alzheimer’s disease

Acta Neuropathologica(2020)10.1007/s00401-020-02200-3

N/A

0.847DataRank · unranked

283 citations

Kui Wang, Gang Hu, Xuran Wang, Zhen Miao, Joshua A. Azevedo +7 more

Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization

NeuroImage(2023)10.1016/j.neuroimage.2023.120125

N/A

0.749DataRank · unranked

146 citations

Andrew A. Chen, Hannah Horng, Vishnu Bashyam, Christos Davatzikos, Aaron Alexander-Bloch +6 more

Rare copy number variants in over 100,000 European ancestry subjects reveal multiple disease associations

Nature Communications(2020)10.1038/s41467-019-13624-1

N/A

0.672DataRank · unranked

87 citations

Joseph Glessner, Bradley P. Coe, Jin Li, Maedeh Mohebnasab, Xiao Chang +36 more

Transferability and Fine Mapping of Type 2 Diabetes Loci in African Americans

Diabetes(2013)10.2337/db12-0266

N/A

0.621DataRank · unranked

62 citations

Richa Saxena, Jiang Li, Nicholette D. Palmer, Latchezar Dimitrov, Jianzhao Xu +20 more

Human Macrophage Long Intergenic Noncoding RNA, SIMALR , Suppresses Inflammatory Macrophage Apoptosis via NTN1 (Netrin-1)

Arteriosclerosis Thrombosis and Vascular Biology(2022)10.1161/atvbaha.122.318353

N/A

0.457DataRank · unranked

20 citations

Daniel Y. Li, M. O'Reilly, Ying Wang, Alexander C. Bashore, Anjali Jha +10 more

Single-Cell Multimodal Profiling of Atherosclerosis Identifies CD200 as a Cell Surface Lineage Marker of Vascular Smooth Muscle Cells and Their Derived Cells

Circulation(2024)10.1161/circulationaha.123.067092

N/A

0.429DataRank · unranked

13 citations

Allen Chung, Chinyere Ibikunle, Hanying Yan, Chenyi Xue, Mingyao Li +3 more

DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.537396

N/A

0.292DataRank · unranked

6 citations

Alfredo Lucas, Andrew A. Chen, Kyle Coleman, Hannah Horng, Raymond W.S. Ng +7 more

Single cell resolution regulatory landscape of the mouse kidney highlights cellular differentiation programs and renal disease targets

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.24.113910

N/A

0.269DataRank · unranked

5 citations

Michael S. Balzer, Ziyuan Ma, Hongbo Liu, Junnan Wu, Rojesh Shrestha +9 more

Prioritized Subset Analysis: Improving Power in Genome-wide Association Studies

UNC Libraries(2020)10.17615/2hv9-bh55

N/A

0.241DataRank · unranked

4 citations

Chun Li, Mingyao Li, Ethan M. Lange, Richard M. Watanabe

Thymic stromal lymphopoietin induces adipose loss through sebum hypersecretion

Science(2021)10.1126/science.abd2893

N/A

0DataRank · unranked

82 citations

Junichiro Tohyama, Shogo Wada, Hu Meng, Jian Hu, Mariko Okumura +18 more

Enhanced single-cell RNA-seq workflow reveals coronary artery disease cellular cross-talk and candidate drug targets

Atherosclerosis(2021)10.1016/j.atherosclerosis.2021.11.025

N/A

0DataRank · unranked

57 citations

Chani J. Hodonsky, Adam W. Turner, Doris Wong, Yipei Song, José Verdezoto Mosquera +17 more

Implication of specific retinal cell-type involvement and gene expression changes in AMD progression using integrative analysis of single-cell and bulk RNA-seq profiling

Scientific Reports(2021)10.1038/s41598-021-95122-3

N/A

0DataRank · unranked

48 citations

Randy J. Zauhar, Nicholas Dana, Christianne E. Strang, Jian Hu, Kui Wang +9 more

Longitudinal Large-Scale Semiquantitative Proteomic Data Stability Across Multiple Instrument Platforms

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00624

N/A

0DataRank · unranked

3 citations

Tina Glisovic‐Aplenc, Kathrin M. Bernt, Kevin Nestler, Joseph Cesare, Lusha Cao +11 more

Inflammatory adipose activates a nutritional immunity pathway leading to retinal dysfunction

Cell Reports(2022)10.1016/j.celrep.2022.110942

N/A

0DataRank · unranked

29 citations

Bailey Baumann, Sierra Foshe, Andrew P. Voigt, Samyuktha Guttha, Ahab Alnemri +13 more

Deciphering tumor ecosystems at super resolution from spatial transcriptomics with TESLA

Cell Systems(2023)10.1016/j.cels.2023.03.008

N/A

0DataRank · unranked

96 citations

Kyle Coleman, Daiwei Zhang, Edward B. Lee, Humam Kadara, Linghua Wang +2 more

Human Alzheimer’s disease reactive astrocytes exhibit a loss of homeostastic gene expression

Acta Neuropathologica Communications(2023)10.1186/s40478-023-01624-8

N/A

0DataRank · unranked

89 citations

Mingyao Li, Edward B. Lee, David Dai

A subpopulation of lipogenic brown adipocytes drives thermogenic memory

Nature Metabolism(2023)10.1038/s42255-023-00893-w

N/A

0DataRank · unranked

32 citations

Prateek Sharma, Lenka Dohnalová, Kyle Coleman, Giulia T. Uhr, Susanna Kircher +21 more

High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis

medRxiv(2023)10.1101/2023.07.13.23292633

N/A

0DataRank · unranked

13 citations

Hanying Yan, Chenyi Xue, Lucie Y. Zhu, Eun‐Young Kim, Thomas Mawson +11 more

Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues

Cell(2024)10.1016/j.cell.2024.09.001

N/A

0DataRank · unranked

93 citations

Dingyao Zhang, Yan Gao, Bo Tao, Daiwei Zhang, Shuozhen Bao +15 more

Monocyte Single-Cell Multimodal Profiling in Cardiovascular Disease Risk States

Circulation Research(2024)10.1161/circresaha.124.324457

N/A

0DataRank · unranked

19 citations

Chenyi Xue, Eunyoung Kim, Hanying Yan, Lucie Y. Zhu, Huize Pan +6 more

DeepComBat : A statistically motivated, hyperparameter‐robust, deep learning approach to harmonization of neuroimaging data

Human Brain Mapping(2024)10.1002/hbm.26708

N/A

0DataRank · unranked

16 citations

Alfredo Lucas, Andrew A. Chen, Kyle Coleman, Hannah Horng, Raymond W.S. Ng +7 more

Network enrichment significance testing in brain–phenotype association studies

Human Brain Mapping(2024)10.1002/hbm.26714

N/A

0DataRank · unranked

15 citations

Simon Vandekar, Bin Li, Aaron Alexander-Bloch, Armin Raznahan, Mingyao Li +10 more

Multiplexed spatial mapping of chromatin features, transcriptome, and proteins in tissues

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.13.612892

N/A

0DataRank · unranked

8 citations

Liran Mao, Yu‐Fan Chen, Chin Nien Lee, Angelysia Cardilla, Mingyao Li +3 more

ADAMTS7 promotes smooth muscle foam cell expansion in atherosclerosis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.26.582156

N/A

0DataRank · unranked

4 citations

Lauren E. Fries, Hyun-Kyung Chang, Huize Pan, Alexander C. Bashore, Karissa Shuck +7 more

Single cell spatial transcriptomics integration deciphers the morphological heterogeneity of atherosclerotic carotid arteries

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.16.649077

N/A

0DataRank · unranked

4 citations

Dániel Garger, Fatemeh Peymani, Justus Wettich, Nadja Sachs, Johannes Wirth +11 more

High inter-rater reliability in consensus diagnoses and overall assessment in the Asian Cohort for Alzheimer’s Disease Study

npj Dementia(2025)10.1038/s44400-025-00015-1

N/A

0DataRank · unranked

0 citations

Ging‐Yuek Robin Hsiung, Boon Lead Tee, Pei‐Chuan Ho, Phoenix Au Yeung, Wai Haung Yu +33 more

As in Real Estate, Location Matters: Cellular Expression of Complement Varies Between Macular and Peripheral Regions of the Retina and Supporting Tissues

Frontiers in Immunology(2022)10.3389/fimmu.2022.895519

N/A

0DataRank · unranked

40 citations

Josef Biber, Yassin Jabri, Mijin Kim, Jian Hu, Lew Kaplan +17 more

Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis

Nature Machine Intelligence(2020)10.1038/s42256-020-00233-7

N/A

0DataRank · unranked

156 citations

Xiangjie Li, Gang Hu, Yafei Lyu, Katalin Suszták, Mingyao Li +1 more

Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis

Nature Communications(2020)10.1038/s41467-020-15851-3

N/A

0DataRank · unranked

436 citations

Kui Wang, Yafei Lyu, Huize Pan, Jingxiao Zhang, Dwight Stambolian +5 more

Assessment of Probable Opioid Use Disorder Using Electronic Health Record Documentation

JAMA Network Open(2020)10.1001/jamanetworkopen.2020.15909

N/A

0DataRank · unranked

62 citations

Kayleigh M. Adamson, Sarathbabu Krishnamurthy, Shivani Manoharan, Donielle Beiler, Anthony Seiwell +10 more

A transcriptome-wide association study based on 27 tissues identifies 106 genes potentially relevant for disease pathology in age-related macular degeneration

Scientific Reports(2020)10.1038/s41598-020-58510-9

N/A

0DataRank · unranked

63 citations

Susette Lauwen, Christina Kiel, Lars G. Fritsche, Wilmar Igl, Jessica N. Cooke Bailey +95 more

Profiling APOL1 Nephropathy Risk Variants in Genome-Edited Kidney Organoids with Single-Cell Transcriptomics

Kidney360(2020)10.34067/kid.0000422019

N/A

0DataRank · unranked

39 citations

Behram Radmanesh, Byung Ha Chung, Michael D. Donnan, Dan Yi, Amal Dadi +6 more

Cognitive Abilities of Dogs with Mucopolysaccharidosis I: Learning and Memory

Animals(2020)10.3390/ani10030397

N/A

0DataRank · unranked

3 citations

Carlo Siracusa, Darko Stefanovski, Yan Che, Mingyao Li, Margret L. Casal +1 more

Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.02.931139

N/A

0DataRank · unranked

8 citations

Xiangjie Li, Gang Hu, Yafei Lyu, Katalin Suszták, Mingyao Li +1 more

LIQA: Long-read Isoform Quantification and Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.09.289793

N/A

0DataRank · unranked

5 citations

Fang Li, Xuelian Chen, Jiang F. Zhong, Mingyao Li, Kai Wang +1 more

Renal proximal tubule cell state and metabolism are coupled by nuclear receptors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.21.307231

N/A

0DataRank · unranked

2 citations

Poonam Dhillon, Carmen Hurtado, Lingzhi Li, Shizheng Huang, Juanjuan Zhao +17 more

Genome-Wide Analyses of Exonic Copy Number Variants in a Family-Based Study Point to Novel Autism Susceptibility Genes

UNC Libraries(2020)10.17615/dvnt-qn64

N/A

0DataRank · unranked

0 citations

Dexter Hadley, Mingyao Li, Ingrid Lindquist, Brett S. Abrahams, Edward I. Herman +27 more

Genetic determinants of the ankle-brachial index: A meta-analysis of a cardiovascular candidate gene 50K SNP panel in the candidate gene association resource (CARe) consortium

UNC Libraries(2020)10.17615/cknt-8a26

N/A

0DataRank · unranked

0 citations

Jane F. Ferguson, Susan Redline, Christina L. Wassel, L. Adrienne Cupples, George Papanicolaou +27 more

Enhanced Statistical Tests for GWAS in Admixed Populations: Assessment using African Americans from CARe and a Breast Cancer Consortium

UNC Libraries(2020)10.17615/3jdw-6426

N/A

0DataRank · unranked

0 citations

Leslie A. Lange, Michael F. Press, Elisa V. Bandera, L. Adrienne Cupples, Solomon K. Musani +27 more

Testing Genetic Association With Rare Variants in Admixed Populations: Rare Variant Analysis in Admixed Populations

UNC Libraries(2020)10.17615/7yv1-m916

N/A

0DataRank · unranked

0 citations

Yun Li, Xianyun Mao, Mingyao Li, Leslie A. Lange

Genome-wide Comparison of African-Ancestry Populations from CARe and Other Cohorts Reveals Signals of Natural Selection

UNC Libraries(2020)10.17615/hjj0-4367

N/A

0DataRank · unranked

0 citations

Pardis C. Sabeti, Leslie A. Lange, Josyf C. Mychaleckyj, George Papanicolaou, Noah Zaitlen +27 more

MaCH-Admix: Genotype Imputation for Admixed Populations: MaCH-Admix: Imputation for Admixed Populations

UNC Libraries(2020)10.17615/54e5-kt40

N/A

0DataRank · unranked

0 citations

Eric Yi Liu, Wei Wang, Yun Li, Mingyao Li

Statistical and machine learning methods for spatially resolved transcriptomics with histology

Computational and Structural Biotechnology Journal(2021)10.1016/j.csbj.2021.06.052

N/A

0DataRank · unranked

97 citations

Amelia Schroeder, Kyle Coleman, Chixiang Chen, Benjamin J. Auerbach, Mingyao Li +1 more

Mingyao Li

Indexed papers

Top data-sharing exemplar

Papers