Stephen D. Fried

Also affiliated with Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyMaterials ScienceChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 25 papers. Top paper: “Protein surface chemistry encodes an adaptive tolerance to desiccation”.

Protein surface chemistry encodes an adaptive tolerance to desiccation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.28.604841

N/A

0.241DataRank · unranked

4 citations

Haley M. Moran, Azeem Horani, Alexander Truong, Edgar Manriquez-Sandoval, John F. Ramirez +12 more

Non-Refoldability is Pervasive Across the E. coli Proteome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.28.273110

N/A

0DataRank · unranked

5 citations

Briana Whitehead, Haley E. Tarbox, Stephen D. Fried, Philip To

How synonymous mutations alter enzyme structure and function over long time scales

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.18.456802

N/A

0DataRank · unranked

12 citations

Syam Sundar Neti, Ian Sitarik, Priya Pradhan, Philip To, Yingzi Xia +4 more

A Proteome-Wide Map of Chaperone-Assisted Protein Refolding in the Cytosol

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.20.469408

N/A

0DataRank · unranked

5 citations

Yingzi Xia, Taylor Devlin, Karen G. Fleming, Stephen D. Fried, Philip To

How synonymous mutations alter enzyme structure and function over long timescales

Nature Chemistry(2022)10.1038/s41557-022-01091-z

N/A

0DataRank · unranked

93 citations

Syam Sundar Neti, Ian Sitarik, Priya Pradhan, Philip To, Yingzi Xia +4 more

Universal protein misfolding intermediates can bypass the proteostasis network and remain soluble and less functional

Nature Communications(2022)10.1038/s41467-022-30548-5

N/A

0DataRank · unranked

58 citations

Yang Jiang, Fabio Trovato, Ian Sitarik, Karthik Narayan, Philip To +4 more

A Newly Identified Class of Protein Misfolding in All-atom Folding Simulations Consistent with Limited Proteolysis Mass Spectrometry

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.19.500586

N/A

0DataRank · unranked

11 citations

Ian Sitarik, Yang Jiang, Divya Yadav, Piyoosh Sharma, Stephen D. Fried +3 more

Proteome-Wide Photo-Crosslinking Enables Residue-Level Visualization of Protein Interaction Networks in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.20.508727

N/A

0DataRank · unranked

2 citations

Piyoosh Sharma, Divya Yadav, Stephen D. Fried, Anneliese M. Faustino

Accurate Protein Domain Structure Annotation with DomainMapper

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.19.484986

N/A

0DataRank · unranked

0 citations

Stephen D. Fried, Edgar Manriquez‐Sandoval

Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability

Journal of the American Chemical Society(2023)10.1021/jacs.2c12987

N/A

0DataRank · unranked

61 citations

Alma Carolina Sánchez-Rocha, Robin Kryštůfek, Ivan Cherepashuk, Volha Dzmitruk, Tatsiana Charnavets +6 more

Progress toward Proteome-Wide Photo-Cross-Linking to Enable Residue-Level Visualization of Protein Structures and Networks In Vivo

Analytical Chemistry(2023)10.1021/acs.analchem.3c01369

N/A

0DataRank · unranked

19 citations

Piyoosh Sharma, Edgar Manriquez‐Sandoval, Divya Yadav, Stephen D. Fried, Anneliese M. Faustino

Secretion‐Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface

Angewandte Chemie International Edition(2023)10.1002/anie.202305178

N/A

0DataRank · unranked

10 citations

Sea On Lee, Nitya Vissamsetti, Si‐Kao Guo, Margaret E. Johnson, Stephen D. Fried +1 more

Intrinsically Disordered Regions Promote Protein Refoldability and Facilitate Retrieval from Biomolecular Condensates

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.25.546465

N/A

0DataRank · unranked

11 citations

Atharva M. Bhagwat, Haley E. Tarbox, Ayse Ecer, Hannah Wendorff, Zanya Jamieson +3 more

FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.569947

N/A

0DataRank · unranked

3 citations

J. P. N. Brewer, Gabriela Lule, Samanta Lopez, Stephen D. Fried, Edgar Manriquez‐Sandoval

FLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe

Journal of Proteome Research(2024)10.1021/acs.jproteome.3c00887

N/A

0DataRank · unranked

25 citations

J. P. N. Brewer, Gabriela Lule, Samanta Lopez, Stephen D. Fried, Edgar Manriquez‐Sandoval

Synonymous Mutations Can Alter Protein Dimerization Through Localized Interface Misfolding Involving Self-entanglements

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168487

N/A

0DataRank · unranked

16 citations

Daniel A. Nissley, Ian Sitarik, Quyen V. Vu, Yang Jiang, Philip To +5 more

Proteome-Wide Assessment of Protein Structural Perturbations under High Pressure

PRX Life(2024)10.1103/prxlife.2.033011

N/A

0DataRank · unranked

10 citations

Edgar Manriquez‐Sandoval, Piyoosh Sharma, Stephen D. Fried, Richard E. Gillilan, Haley M. Moran

Cognition-Associated Protein Structural Changes in a Rat Model of Aging are Related to Reduced Refolding Capacity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.20.614172

N/A

0DataRank · unranked

0 citations

Audrey Branch, Stephen D. Fried, Haley E. Tarbox

Chaperone dependency during biogenesis does not correlate with chaperone dependency during refolding

Molecular Systems Biology(2025)10.1038/s44320-025-00166-6

N/A

0DataRank · unranked

3 citations

Idil Itir Demiralp, Mark Fakler, Stephen D. Fried, Divya Yadav

Protein surface chemistry encodes an adaptive tolerance to desiccation

Cell Systems(2025)10.1016/j.cels.2025.101407

N/A

0DataRank · unranked

1 citations

Haley M. Moran, David P Cordone, Azeem Horani, Alexander Truong, Edgar Manriquez-Sandoval +14 more

Investigation of the global translational response to oxidative stress in the model archaeon Haloferax volcanii reveals untranslated small RNAs with ribosome occupancy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.08.647799

N/A

0DataRank · unranked

0 citations

Haley M. Moran, Sadhana R. Chidambaran, Arman Kian, Betty Y.H. Huang, Stephen D. Fried +2 more

Phosphoglycerate Kinase Can Adopt a Topologically Misfolded Form that is More Stable than its Native State

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.24.661412

N/A

0DataRank · unranked

0 citations

Barbara Amann, Richard E. Gillilan, Piyoosh Sharma, Sreemantee Sen, Karen G. Fleming +2 more

Phase separation of PGL-3 driven by structured domains that oligomerize and interact with RGG motifs

DOAJ (DOAJ: Directory of Open Access Journals)(2025)10.6019/s-biad2412

N/A

0DataRank · unranked

0 citations

Piyoosh Sharma, Andrea Putnam, Stephen D. Fried, Géraldine Seydoux, R. Kuroiwa

A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase

Journal of the American Chemical Society(2020)10.1021/jacs.0c00383

N/A

0DataRank · unranked

66 citations

Stephen D. Fried, Steven G. Boxer, Yufan Wu

Cryo-EM structures of plant Augmin reveal coiled-coil assembly, antiparallel dimerization, and NEDD1 binding

Nature Communications(2025)10.1038/s41467-025-66332-4

N/A

0DataRank · unranked

0 citations

Aryan Taheri, Yuh‐Ru Julie Lee, Yuqi Tang, Shubham Mittal, Fei Guo +5 more