Robert W. Shafer

Also affiliated with Stanford University

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.2Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons

PLoS ONE(2022)10.1371/journal.pone.0261045

Top 5%

4.4DataRank

Top 5%122 citations

Kaiming Tao, Sergei L. Kosakovsky Pond, Robert W. Shafer, Philip L. Tzou

Papers

Driven by 47 papers — median percentile 67. Top paper: “A systematic review of the genetic mechanisms of dolutegravir resistance”.

A systematic review of the genetic mechanisms of dolutegravir resistance

Journal of Antimicrobial Chemotherapy(2019)10.1093/jac/dkz256

N/A

8.3DataRank · unranked

155 citations

Philip M Grant, Philip L. Tzou, Geoffrey Barrow, P. Richard Harrigan, John P. A. Ioannidis +3 more

Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons

PLoS ONE(2022)10.1371/journal.pone.0261045

Top 5%

4.4DataRank

Top 5%122 citations

Kaiming Tao, Sergei L. Kosakovsky Pond, Robert W. Shafer, Philip L. Tzou

Coronavirus Antiviral Research Database (CoV-RDB): An Online Database Designed to Facilitate Comparisons Between Candidate Anti-Coronavirus Compounds

Preprints.org(2020)10.20944/preprints202007.0551.v1

Top 20%

1.0DataRank

Top 20%16 citations

Kaiming Tao, Janin Nouhin, Soo‐Yon Rhee, Benjamin D. Hu, Shruti Pai +3 more

Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

PLOS Medicine(2015)10.1371/journal.pmed.1001810

N/A

0.816DataRank · unranked

229 citations

Jose Luis Blanco, Michael R. Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese +88 more

Public availability of HIV-1 drug resistance sequence and treatment data: a systematic review

The Lancet Microbe(2022)10.1016/s2666-5247(21)00250-0

Top 25%

0.804DataRank

Top 25%22 citations

Seble Kassaye, Michael R. Jordan, Vinie Kouamou, David Katzenstein, Robert W. Shafer +1 more

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

Molecular Biology and Evolution(2022)10.1093/molbev/msac061

N/A

0.723DataRank · unranked

123 citations

Spyros Lytras, Alexander G. Lucaci, Wolfgang Maier, Björn Grüning, Stephen D. Shank +33 more

Predicted effects of the introduction of long-acting injectable cabotegravir pre-exposure prophylaxis in sub-Saharan Africa: a modelling study

The Lancet HIV(2023)10.1016/s2352-3018(22)00365-4

N/A

0.626DataRank · unranked

64 citations

Loveleen Bansi‐Matharu, Valentina Cambiano, Dobromir Dimitrov, Anna Bershteyn, David van de Vijver +32 more

SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA

Emerging infectious diseases(2021)10.3201/eid2710.211461

N/A

0.624DataRank · unranked

63 citations

Cristina Costales, Malaya K. Sahoo, Srikanth Palanisamy, Fumiko Yamamoto, ChunHong Huang +9 more

Prevalence of Emergent Dolutegravir Resistance Mutations in People Living with HIV: A Rapid Scoping Review

Viruses(2024)10.3390/v16030399

N/A

0.609DataRank · unranked

57 citations

Kaiming Tao, Vinie Kouamou, Ava Avalos, Jake Scott, Philip Grant +6 more

Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences

PLoS ONE(2020)10.1371/journal.pone.0225352

N/A

0.550DataRank · unranked

38 citations

Sergei L. Kosakovsky Pond, Santiago Ávila‐Ríos, Susan Holmes, Rami Kantor, Robert W. Shafer +1 more

Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

PLOS Medicine(2015)10.1371/journal.pmed.1001845

N/A

0.500DataRank · unranked

27 citations

Jose Luis Blanco, Michael R. Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese +89 more

GPT-4 performance on querying scientific publications: reproducibility, accuracy, and impact of an instruction sheet

BMC Medical Research Methodology(2024)10.1186/s12874-024-02253-y

N/A

0.489DataRank · unranked

25 citations

Zachary A. Osman, Philip L. Tzou, Soo‐Yon Rhee, Vineet Ahluwalia, Robert W. Shafer +1 more

Comprehensive database of HIV mutations selected during antiretroviral in vitro passage experiments

Antiviral Research(2024)10.1016/j.antiviral.2024.105988

Top 42%

0.450DataRank

Top 42%7 citations

Jinru Zhou, Pavithra Nagarajan, Philip L. Tzou, Robert W. Shafer, Kaiming Tao

Cost-effectiveness analysis of pre-ART HIV drug resistance testing in Kenyan women

EClinicalMedicine(2020)10.1016/j.eclinm.2020.100355

N/A

0.434DataRank · unranked

17 citations

Joseph B. Babigumira, Eva A. Enns, David Stauffer, Robert W. Shafer, Ingrid A. Beck +5 more

Hepatitis B virus resistance to nucleos(t)ide analogue therapy: WHO consultation on questions, challenges, and a roadmap for the field

The Lancet Microbe(2025)10.1016/j.lanmic.2025.101076

N/A

0.373DataRank · unranked

11 citations

Jolynne Mokaya, Tongai Maponga, Anna Kramvis, Geoffrey Dusheiko, William L. Irving +39 more

Spectrum of Non-Nucleoside Reverse Transcriptase Inhibitor-Associated Drug Resistance Mutations in Persons Living with HIV-1 Receiving Rilpivirine

Viruses(2024)10.3390/v16111715

Top 49%

0.363DataRank

Top 49%4 citations

Jinru Zhou, Giulia Di Teodoro, Francesca Incardona, Carole Seguin‐Devaux, Rolf Kaiser +6 more

Response to Therapy in Antiretroviral Therapy–Naive Patients With Isolated Nonnucleoside Reverse Transcriptase Inhibitor–Associated Transmitted Drug Resistance

JAIDS Journal of Acquired Immune Deficiency Syndromes(2016)10.1097/qai.0000000000000942

N/A

0.360DataRank · unranked

10 citations

W. Jeffrey Fessel, Leo B. Hurley, Daniel B. Klein, John P. A. Ioannidis, Michael J. Silverberg +4 more

Potential role of doravirine for the treatment of HIV-1-infected persons with transmitted drug resistance

AIDS Research and Therapy(2023)10.1186/s12981-023-00503-5

N/A

0.360DataRank · unranked

10 citations

Jonathan Schapiro, Francesco Saladini, Maurizio Zazzi, Saye Khoo, Robert W. Shafer +1 more

Recommendations on data sharing in HIV drug resistance research

PLOS Medicine(2023)10.1371/journal.pmed.1004293

N/A

0.360DataRank · unranked

10 citations

Mark J. Siedner, Susan J. Little, Santiago Ávila‐Ríos, Alisen Ayitewala, Ronald J. Bosch +50 more

Risk of Emergent Dolutegravir Resistance Mutations In People Living With HIV: A Rapid Scoping Review

medRxiv(2024)10.1101/2024.01.05.24300911

N/A

0.345DataRank · unranked

9 citations

Kaiming Tao, Vinie Kouamou, Ava Avalos, Jake Scott, Philip Grant +6 more

Genotypic Correlates of Resistance to the HIV-1 Strand Transfer Integrase Inhibitor Cabotegravir

Research Square(2022)10.21203/rs.3.rs-2012078/v1

N/A

0.241DataRank · unranked

4 citations

Neil Parkin, P. Richard Harrigan, Susan Holmes, Robert W. Shafer, Soo‐Yon Rhee

GenBank2PubMed: bridging viral genomic data and the scientific literature with AI-assisted curation

Scientific Reports(2025)10.1038/s41598-025-28386-8

Top 78%

0.104DataRank

Top 78%1 citations

Jinru Zhou, Yimam Getaneh, Robert W. Shafer, Kaiming Tao

GPT-4 Performance on Querying Scientific Publications: Reproducibility, Accuracy, and Impact of an Instruction Sheet

Research Square(2024)10.21203/rs.3.rs-3847311/v2

N/A

0.104DataRank · unranked

1 citations

Zachary A. Osman, Philip L. Tzou, Soo‐Yon Rhee, Vineet Ahluwalia, Robert W. Shafer +1 more

2025 Clinical Practice Guideline Update by the Infectious Diseases Society of America on the Treatment and Management of COVID-19: Infliximab

Clinical Infectious Diseases(2025)10.1093/cid/ciaf355

N/A

0DataRank · unranked

1 citations

Adarsh Bhimraj, Kelly Cawcutt, Kathleen Chiotos, Amy Dzierba, Arthur Y Kim +24 more

Fine-tuned large language models for answering questions about full-text biomedical research studies

Research Square(2025)10.21203/rs.3.rs-6397312/v1

N/A

0DataRank · unranked

0 citations

Jinru Zhou, Zachary A. Osman, Vineet Ahluwalia, Chiara Sabatti, Robert W. Shafer +1 more

HIV‐1 transmitted drug resistance surveillance: shifting trends in study design and prevalence estimates

Journal of the International AIDS Society(2020)10.1002/jia2.25611

N/A

0DataRank · unranked

69 citations

Seble Kassaye, Geoffrey Barrow, Jagadish Chandrabose Sundaramurthi, Michael R. Jordan, Robert W. Shafer +1 more

In vitro cross-resistance to doravirine in a panel of HIV-1 clones harbouring multiple NNRTI resistance mutations

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa401

N/A

0DataRank · unranked

20 citations

Federica Giammarino, Behnaz A Hosseini, Alessia Giannini, Adele Boccuto, Filippo Dragoni +4 more

Virological Failure and Acquired Genotypic Resistance Associated With Contemporary Antiretroviral Treatment Regimens

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa316

N/A

0DataRank · unranked

17 citations

Dana Clutter, C. Bradley Hare, Christophe Toukam Tchakoute, Kristin L. Sainani, W. Jeffrey Fessel +6 more

Predictors of first-line antiretroviral therapy failure among adults and adolescents living with HIV/AIDS in a large prevention and treatment program in Nigeria

AIDS Research and Therapy(2020)10.1186/s12981-020-00317-9

N/A

0DataRank · unranked

10 citations

Fati Murtala-Ibrahim, Monday Tola, Jibreel Jumare, Ahmad Aliyu, Peter Alabi +11 more

Expanded Spectrum of Antiretroviral-Selected Mutations in Human Immunodeficiency Virus Type 2

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa026

N/A

0DataRank · unranked

26 citations

Diane Descamps, Soo‐Yon Rhee, Dana N. Raugi, Charlotte Charpentier, Nuno Taveira +7 more

HIV-1 Protease, Reverse Transcriptase, and Integrase Variation

UNC Libraries(2020)10.17615/j3nc-yk91

N/A

0DataRank · unranked

0 citations

Vici Varghese, Soo‐Yon Rhee, Kris Sankaran, Joseph J. Eron, Susan Holmes +5 more

Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-analysis

Microbiology Spectrum(2022)10.1128/spectrum.00926-22

N/A

0DataRank · unranked

82 citations

Philip L. Tzou, Sergei L. Kosakovsky Pond, John P. A. Ioannidis, Robert W. Shafer, Kaiming Tao

Adherence to contemporary antiretroviral treatment regimens and impact on immunological and virologic outcomes in a US healthcare system

PLoS ONE(2022)10.1371/journal.pone.0263742

N/A

0DataRank · unranked

40 citations

Soo‐Yon Rhee, C. Bradley Hare, Robert W. Shafer, Kristin L. Sainani, Christophe Toukam Tchakoute

Genotypic correlates of resistance to the HIV-1 strand transfer integrase inhibitor cabotegravir

Antiviral Research(2022)10.1016/j.antiviral.2022.105427

N/A

0DataRank · unranked

24 citations

Neil Parkin, P. Richard Harrigan, Susan Holmes, Robert W. Shafer, Soo‐Yon Rhee

Sierra SARS-CoV-2 sequence and antiviral resistance analysis program

Journal of Clinical Virology(2022)10.1016/j.jcv.2022.105323

N/A

0DataRank · unranked

11 citations

Kaiming Tao, Malaya K. Sahoo, Sergei L. Kosakovsky Pond, Benjamin A. Pinsky, Robert W. Shafer +1 more

Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States

Viruses(2022)10.3390/v15010068

N/A

0DataRank · unranked

3 citations

Zehava Grossman, Priyanka Vengurlekar, William Chai, Megan A. Wallace, Soo‐Yon Rhee +11 more

Susceptibility of SARS-CoV-2 Omicron Variants to Therapeutic Monoclonal Antibodies: Systematic Review and Meta-Analysis

Preprints.org(2022)10.20944/preprints202203.0155.v1

N/A

0DataRank · unranked

9 citations

Philip L. Tzou, Sergei L. Kosakovsky Pond, John P. A. Ioannidis, Robert W. Shafer, Kaiming Tao

Potential Role of Doravirine for the Treatment of Patients with Transmitted Drug Resistance

Research Square(2022)10.21203/rs.3.rs-1976150/v1

N/A

0DataRank · unranked

1 citations

Jonathan Schapiro, Francesco Saladini, Maurizio Zazzi, Saye Khoo, Robert W. Shafer +1 more

Treatment Emergent Dolutegravir Resistance Mutations in Individuals Naïve to HIV-1 Integrase Inhibitors: A Rapid Scoping Review

Viruses(2023)10.3390/v15091932

N/A

0DataRank · unranked

53 citations

Soo‐Yon Rhee, Carolyn Chu, Ava Avalos, Amrit Ahluwalia, Ravindra K. Gupta +3 more

Low-dose naltrexone use for the management of post-acute sequelae of COVID-19

International Immunopharmacology(2023)10.1016/j.intimp.2023.110966

N/A

0DataRank · unranked

30 citations

Lü Tian, Vincent C. Marconi, Robert W. Shafer, Grace A. McComsey, Mitchell G. Miglis +5 more

Human immunodeficiency virus 1 5′-leader mutations in plasma viruses before and after the development of reverse transcriptase inhibitor-resistance mutations

Journal of General Virology(2023)10.1099/jgv.0.001898

N/A

0DataRank · unranked

3 citations

Philip L. Tzou, Soo‐Yon Rhee, Malaya K. Sahoo, Benjamin A. Pinsky, Miri Krupkin +4 more

HIV-1 5’-Leader Mutations in Plasma Viruses Before and After the Development of Reverse Transcriptase Inhibitor-Resistance Mutations

medRxiv(2023)10.1101/2023.06.04.23290942

N/A

0DataRank · unranked

0 citations

Philip L. Tzou, Soo‐Yon Rhee, Malaya K. Sahoo, Benjamin A. Pinsky, Miri Krupkin +4 more

Emerging SARS-CoV-2 Resistance After Antiviral Treatment

JAMA Network Open(2024)10.1001/jamanetworkopen.2024.35431

N/A

0DataRank · unranked

45 citations

Manish C. Choudhary, Rinki Deo, Fizah Yousuf, A. Gomez, Gregory E. Edelstein +23 more

GPT-4 Performance on Querying Scientific Publications: Reproducibility, Accuracy, and Impact of an Instruction Sheet

Research Square(2024)10.21203/rs.3.rs-3847311/v1

N/A

0DataRank · unranked

2 citations

Zachary A. Osman, Philip L. Tzou, Soo‐Yon Rhee, Vineet Ahluwalia, Robert W. Shafer +1 more

Noncanonical HIV drug resistance mutations: need to close existing gaps

AIDS(2025)10.1097/qad.0000000000004170

N/A

0DataRank · unranked

4 citations

Michael R. Jordan, Joseph Fokam, Raph L. Hamers, Roger Paredes, Trevor A. Crowell +7 more

2025 Clinical Practice Guideline Update by the Infectious Diseases Society of America on the Treatment and Management of COVID-19: Pemivibart for Pre-exposure Prophylaxis, Vilobelimab for Critical Illness, and Abatacept or Infliximab for Severe or Critical Illness

Clinical Infectious Diseases(2025)10.1093/cid/ciaf424

N/A

0DataRank · unranked

4 citations

Yngve Falck–Ytter, Lindsey R. Baden, Roger Bedimo, Kelly Cawcutt, Vincent Chi‐Chung Cheng +24 more

2025 Clinical Practice Guideline Update by the Infectious Diseases Society of America on the Treatment and Management of COVID-19: Vilobelimab

Clinical Infectious Diseases(2025)10.1093/cid/ciaf235

N/A

0DataRank · unranked

1 citations

Adarsh Bhimraj, Kelly Cawcutt, Kathleen Chiotos, Amy Dzierba, Arthur Y Kim +24 more

Robert W. Shafer

Indexed papers

Top data-sharing exemplar

Papers