Richard A. Neher

Also affiliated with University of Basel

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse”.

SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse

Nature Microbiology(2021)10.1038/s41564-021-00932-w

N/A

0.863DataRank · unranked

315 citations

Mark D. Perkins, Jens H. Kuhn, Mark J. Pallen, Erik Alm, Brett N. Archer +42 more

Blind Source Separation Techniques for the Decomposition of Multiply Labeled Fluorescence Images

Biophysical Journal(2009)10.1016/j.bpj.2008.10.068

N/A

0.723DataRank · unranked

123 citations

Mišo Mitkovski, Frank Kirchhoff, Erwin Neher, Fabian Joachim Theis, André Zeug +1 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

SARS-CoV-2 infection in immunosuppression evolves sub-lineages which independently accumulate neutralization escape mutations

Virus Evolution(2023)10.1093/ve/vead075

N/A

0.544DataRank · unranked

13 citations

Yashica Ganga, Hylton Rodel, Houriiyah Tegally, Afrah Khairallah, Laurelle Jackson +15 more

Recommendations on data sharing in HIV drug resistance research

PLOS Medicine(2023)10.1371/journal.pmed.1004293

N/A

0.360DataRank · unranked

10 citations

Mark J. Siedner, Susan J. Little, Santiago Ávila‐Ríos, Alisen Ayitewala, Ronald J. Bosch +50 more

Blind Source Separation Techniques For The Decomposition Of Multiply Labeled Fluorescence Images

Biophysical Journal(2009)10.1016/j.bpj.2008.12.056

N/A

0.165DataRank · unranked

2 citations

Mišo Mitkovski, Frank Kirchhoff, Erwin Neher, Fabian Joachim Theis, André Zeug +1 more

A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.13.512056

N/A

0DataRank · unranked

20 citations

Katharine H. D. Crawford, Caelan E. Radford, Ariana Ghez Farrell, Timothy C. Yu, William W. Hannon +8 more

Evolution of the SARS-CoV-2 mutational spectrum

(2022)10.1101/2022.11.19.517207

N/A

0DataRank · unranked

8 citations

Annabel C. Beichman, Richard A. Neher, Kelley Harris, Jesse D. Bloom

A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike

Cell(2023)10.1016/j.cell.2023.02.001

N/A

0DataRank · unranked

212 citations

Katharine H. D. Crawford, Caelan E. Radford, Ariana Ghez Farrell, Timothy C. Yu, William W. Hannon +9 more

APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016

Science(2023)10.1126/science.adg8116

N/A

0DataRank · unranked

204 citations

Richard A. Neher, Nnaemeka Ndodo, Vítor Borges, Ben Gannon, João Paulo Gomes +16 more

Fitness effects of mutations to SARS-CoV-2 proteins

Virus Evolution(2023)10.1093/ve/vead055

N/A

0DataRank · unranked

109 citations

Richard A. Neher, Jesse D. Bloom

Evolution of the SARS-CoV-2 Mutational Spectrum

Molecular Biology and Evolution(2023)10.1093/molbev/msad085

N/A

0DataRank · unranked

77 citations

Annabel C. Beichman, Richard A. Neher, Kelley Harris, Jesse D. Bloom

Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal

Nature Medicine(2023)10.1038/s41591-023-02542-x

N/A

0DataRank · unranked

52 citations

Mariana Perez Duque, João Vieira Martins, Paula Vasconcelos, Rita Ferreira, Daniel Sobral +67 more

Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition

Frontiers in Bioinformatics(2023)10.3389/fbinf.2023.1069487

N/A

0DataRank · unranked

9 citations

James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Trevor Bedford +2 more

Fitness effects of mutations to SARS-CoV-2 proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526314

N/A

0DataRank · unranked

46 citations

Richard A. Neher, Jesse D. Bloom

The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure

Nucleic Acids Research(2025)10.1093/nar/gkaf503

N/A

0DataRank · unranked

13 citations

Georg Angehrn, Luca Sesta, Chris Jennings-Shaffer, Seth D Temple, Jared Galloway +6 more

Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignment

Virus Evolution(2025)10.1093/ve/veaf058

N/A

0DataRank · unranked

2 citations

Samuel S. Shepard, Sonja A. Zolnoski, Tommy Tsan‐Yuk Lam, C. Todd Davis, Richard A. Neher +2 more

The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.07.631013

N/A

0DataRank · unranked

4 citations

Georg Angehrn, Luca Sesta, Chris Jennings-Shaffer, Seth D Temple, Jared Galloway +5 more

Cryptic transmission of SARS-CoV-2 in Washington state

Science(2020)10.1126/science.abc0523

N/A

0DataRank · unranked

329 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +62 more

Cryptic transmission of SARS-CoV-2 in Washington State

medRxiv(2020)10.1101/2020.04.02.20051417

N/A

0DataRank · unranked

86 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +52 more

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.145151

N/A

0DataRank · unranked

6 citations

John Barnes, Thomas Rowe, Xiyan Xu, Rebecca Kondor, David E. Wentworth +14 more

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

The Journal of Open Source Software(2021)10.21105/joss.02906

N/A

0DataRank · unranked

273 citations

James Hadfield, Thomas R. Sibley, Jover Lee, Kairsten Fay, Misja Ilcisin +5 more

Limited Predictability of Amino Acid Substitutions in Seasonal Influenza Viruses

Molecular Biology and Evolution(2021)10.1093/molbev/msab065

N/A

0DataRank · unranked

42 citations

John Huddleston, Trevor Bedford, Richard A. Neher, Pierre Barrat-Charlaix