Siranush Sarkizova

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma”.

Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma

Nature Medicine(2021)10.1038/s41591-020-01206-4

N/A

4.5DataRank · unranked

525 citations

Donna Leet, Rosa Lundbye Allesøe, Giacomo Oliveira, Shuqiang Li, Adrienne Luoma +36 more

High-throughput RNA isoform sequencing using programmed cDNA concatenation

Nature Biotechnology(2023)10.1038/s41587-023-01815-7

N/A

3.9DataRank · unranked

181 citations

Jonathan T. Smith, Kiran Garimella, Mehrtash Babadi, Victoria Popic, Moshe Sade-Feldman +14 more

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.945840

N/A

1.7DataRank · unranked

45 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +22 more

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

Science(2017)10.1126/science.aah4573

N/A

1.2DataRank · unranked

2459 citations

Rahul Satija, Gary Reynolds, Siranush Sarkizova, Karthik Shekhar, James Fletcher +19 more

Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma

Journal of Clinical Investigation(2022)10.1172/jci151666

N/A

1.0DataRank · unranked

32 citations

Susan Klaeger, Phuong M. Le, Keegan Korthauer, Jingwei Cheng, Varsha Ananthapadmanabhan +41 more

Spatially organized multicellular immune hubs in human colorectal cancer

Cell(2021)10.1016/j.cell.2021.08.003

N/A

1.0DataRank · unranked

787 citations

Matan Hofree, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji, Alborz Bejnood +73 more

Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps

Cell(2021)10.1016/j.cell.2021.11.031

N/A

0.871DataRank · unranked

332 citations

Cherie’ R. Scurrah, Eliot T. McKinley, Alan J. Simmons, Marisol A. Ramirez-Solano, Xiangzhu Zhu +48 more

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

Nature Biotechnology(2021)10.1038/s41587-021-01021-3

N/A

0.853DataRank · unranked

294 citations

Travis Law, Karl R. Clauser, Susan Klaeger, Siranush Sarkizova, François Aguet +24 more

Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq

Nature Methods(2020)10.1038/s41592-020-0905-x

N/A

0.837DataRank · unranked

264 citations

Joshua Gould, Yiming Yang, Siranush Sarkizova, Marcin Tabaka, Orr Ashenberg +9 more

Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs

Cell(2021)10.1016/j.cell.2021.05.046

N/A

0.768DataRank · unranked

166 citations

Susan Klaeger, Siranush Sarkizova, Leah R. Pearlman, Da‐Yuan Chen, Kathleen Gallagher +53 more

Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100133

N/A

0.609DataRank · unranked

57 citations

Annie Apffel, Karl R. Clauser, Siranush Sarkizova, Giacomo Oliveira, Suzanna Rachimi +12 more

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.30.426796

N/A

0.297DataRank · unranked

4 citations

Matan Hofree, Jonathan Chen, Siranush Sarkizova, Joshua D. Pirl, Vjola Jorgji +71 more

Unsupervised Protein-Ligand Binding Energy Prediction via Neural Euler's Rotation Equation

PubMed(2023)10.48550/arxiv.2301.10814

N/A

0.290DataRank · unranked

4 citations

Siranush Sarkizova, Xun Chen, Nir Hacohen, Caroline Uhler, Wengong Jin

Optimized liquid and gas phase fractionation increase HLA-peptidome coverage for primary cell and tissue samples

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.25.445487

N/A

0.104DataRank · unranked

1 citations

Annie Apffel, Karl R. Clauser, Siranush Sarkizova, Giacomo Oliveira, Suzanna Rachimi +12 more

The HLA-II immunopeptidome of SARS-CoV-2

Cell Reports(2023)10.1016/j.celrep.2023.113596

N/A

0DataRank · unranked

15 citations

Da‐Yuan Chen, Siranush Sarkizova, Hannah B. Taylor, Matteo Gentili, Gabrielle M. Hernandez +10 more

The HLA-II immunopeptidome of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.26.542482

N/A

0DataRank · unranked

5 citations

Da‐Yuan Chen, Siranush Sarkizova, Hannah B. Taylor, Matteo Gentili, Leah R. Pearlman +9 more

Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy

Nature Immunology(2024)10.1038/s41590-024-01792-2

N/A

0DataRank · unranked

132 citations

Linda T. Nieman, Maxwell Spurrell, Vjola Jorgji, Liad Elmelech, Peter Richieri +32 more

MS-Based HLA-II Peptidomics Combined With Multiomics Will Aid the Development of Future Immunotherapies

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100116

N/A

0DataRank · unranked

23 citations

Susan Klaeger, Karl R. Clauser, Siranush Sarkizova, Shira Weingarten-Gabbay, Daniel B. Graham +3 more

Selection of targeted neoantigens for ongoing personalized cancer vaccine trials at Dana Farber Cancer Institute 2189

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.138

N/A

0DataRank · unranked

0 citations

David A. Braun, Cleo Forman, Chloe Ran Tu, Siranush Sarkizova, Nir Hacohen +4 more

High-throughput RNA isoform sequencing using programmable cDNA concatenation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.01.462818

N/A

0DataRank · unranked

26 citations

Jonathan T. Smith, Kiran Garimella, Mehrtash Babadi, Moshe Sade-Feldman, Michael Gatzen +14 more

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.02.324145

N/A

0DataRank · unranked

21 citations

Susan Klaeger, Siranush Sarkizova, Leah R. Pearlman, Da‐Yuan Chen, Matthew R. Bauer +16 more