A. Joachimiak

Also affiliated with University of Illinois Chicago, University of Chicago, Molecular Biology Consortium

Materials ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.0Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Structural genomics and the Protein Data Bank

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100747

Top 18%

1.1DataRank

Top 18%19 citations

A. Joachimiak, K. Michalska

Papers

Driven by 57 papers — median percentile 77. Top paper: “Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules”.

Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules

Structure(2006)10.1016/j.str.2006.06.005

N/A

2.5DataRank · unranked

70 citations

Stephen K. Burley, Wah Chiu, Andrej Sali, Alexei Adzhubei, Philip E. Bourne +28 more

Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.06.240192

N/A

1.6DataRank · unranked

46 citations

Saara‐Anne Azizi, Steve Dvorkin, M. Endres, R. Jedrzejczak, Krysten A. Jones +16 more

Allosteric inhibitors of Mycobacterium tuberculosis tryptophan synthase

Protein Science(2020)10.1002/pro.3825

N/A

1.3DataRank · unranked

34 citations

Changsoo Chang, N.I. Maltseva, R. Jedrzejczak, Gregory T. Robertson, Fabian Gusovsky +5 more

Structural genomics and the Protein Data Bank

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100747

Top 18%

1.1DataRank

Top 18%19 citations

A. Joachimiak, K. Michalska

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7

Top 23%

0.871DataRank

Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2

Nature Communications(2023)10.1038/s41467-023-37254-w

N/A

0.686DataRank · unranked

96 citations

Suman Pokhrel, Audrey Labbé, Irimpan I. Mathews, Connor J. Cooper, Russell B. Davidson +28 more

2′-O methylation of RNA cap in SARS-CoV-2 captured by serial crystallography

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2100170118

N/A

0.646DataRank · unranked

73 citations

D.A. Sherrell, G. Minasov, Youngchang Kim, L. Shuvalova, Alex Lavens +10 more

Native Mass Spectrometry Dissects the Structural Dynamics of an Allosteric Heterodimer of SARS-CoV-2 Nonstructural Proteins

Journal of the American Society for Mass Spectrometry(2024)10.1021/jasms.3c00453

N/A

0.312DataRank · unranked

7 citations

Deseree Reid, Jesse Wilson, Rohith Varikoti, Natalia Maltseva, Katherine Schultz +6 more

Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation

Nucleic Acids Research(2021)10.1093/nar/gkab272

N/A

0.269DataRank · unranked

5 citations

R. Jedrzejczak, Jacek Wower, Changsoo Chang, Beatriz Baragaña, Ian H. Gilbert +3 more

A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae

Microbiology Resource Announcements(2023)10.1128/mra.01013-22

N/A

0.269DataRank · unranked

5 citations

Travis J. Kochan, G. Minasov, Z. Wawrzak, Changsoo Chang, Kemin Tan +12 more

Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

Research Square(2022)10.21203/rs.3.rs-1507220/v1

N/A

0.241DataRank · unranked

4 citations

J. Osipiuk, Paweł M. Wydorski, Benjamin T. Lanham, C. Tesar, M. Endres +8 more

A cryptic oxidoreductase safeguards oxidative protein folding in Corynebacterium diphtheriae

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2208675120

N/A

0.241DataRank · unranked

4 citations

Minh Tan Nguyen, Belkys C. Sanchez, J. Osipiuk, Christian Rückert, Chungyu Chang +7 more

Promising approaches for the assembly of the catalytically active, recombinant Desulfomicrobium baculatum hydrogenase with substitutions at the active site

Microbial Cell Factories(2023)10.1186/s12934-023-02127-w

N/A

0.208DataRank · unranked

3 citations

R. Jedrzejczak, A. Joachimiak, Onur Cavdar, Anna Malankowska, Piotr M. Skowron +2 more

Molecular basis for dual functions in pilus assembly modulated by the lid of a pilus-specific sortase

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107329

N/A

0.165DataRank · unranked

2 citations

HyLam Ton-That, J. Osipiuk, A. Joachimiak, Asis Das, Hung Ton‐That +1 more

Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors

Nature Communications(2021)10.1038/s41467-021-21060-3

N/A

0DataRank · unranked

459 citations

Saara‐Anne Azizi, Steve Dvorkin, M. Endres, R. Jedrzejczak, Krysten A. Jones +16 more

Masitinib is a broad coronavirus 3CL inhibitor that blocks replication of SARS-CoV-2

Science(2021)10.1126/science.abg5827

N/A

0DataRank · unranked

257 citations

Jennifer K. DeMarco, Krysten A. Jones, Saara‐Anne Azizi, Heather M. Froggatt, Kemin Tan +33 more

Profiling B cell immunodominance after SARS-CoV-2 infection reveals antibody evolution to non-neutralizing viral targets

Immunity(2021)10.1016/j.immuni.2021.05.001

N/A

0DataRank · unranked

148 citations

Christopher T. Stamper, Lei Li, Siriruk Changrob, Nicholas Asby, Peter Halfmann +27 more

Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2

Communications Biology(2021)10.1038/s42003-021-01735-9

N/A

0DataRank · unranked

134 citations

Jacek Wower, N. Maltseva, Changsoo Chang, R. Jedrzejczak, Mateusz Wilamowski +6 more

Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication

Biophysical Journal(2021)10.1016/j.bpj.2021.06.006

N/A

0DataRank · unranked

63 citations

Michal Hammel, Wellington Leite, Qiu Zhang, Youngchang Kim, Kevin L. Weiss +12 more

Target highlights in CASP14 : Analysis of models by structure providers

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26247

N/A

0DataRank · unranked

39 citations

Rosalba Lepore, Andriy Kryshtafovych, Athanassios Adamopoulos, Markus Alahuhta, Ann M. Arvin +33 more

Improved integration of single-cell transcriptome and surface protein expression by LinQ-View

Cell Reports Methods(2021)10.1016/j.crmeth.2021.100056

N/A

0DataRank · unranked

13 citations

Haley L. Dugan, Christopher T. Stamper, Linda Yu-Ling Lan, Nicholas Asby, Matthew Knight +17 more

An efficient chemical screening method for structure-based inhibitors to nucleic acid enzymes targeting the DNA repair-replication interface and SARS CoV-2

Methods in enzymology on CD-ROM/Methods in enzymology(2021)10.1016/bs.mie.2021.09.003

N/A

0DataRank · unranked

9 citations

Todd Link, Chris A. Brosey, Panagiotis Katsonis, Olivier Lichtarge, Youngchang Kim +8 more

Biochemical and structural studies of two tetrameric nucleoside 2′-deoxyribosyltransferases from psychrophilic and mesophilic bacteria: Insights into cold-adaptation

International Journal of Biological Macromolecules(2021)10.1016/j.ijbiomac.2021.09.164

N/A

0DataRank · unranked

7 citations

Iván Acebrón, Ruiying Wu, Yohana Alfaro, Javier Acosta, P.A. Kaminski +6 more

Potent and Selective Covalent Inhibitors of the Papain-like Protease from SARS-CoV-2

Research Square(2021)10.21203/rs.3.rs-906621/v1

N/A

0DataRank · unranked

13 citations

Suman Pohkrel, Audrey Labbé, Irimpan I. Mathews, Connor J. Cooper, Russell B. Davidson +21 more

Rigid monoclonal antibodies improve detection of SARS-CoV-2 nucleocapsid protein

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.13.426597

N/A

0DataRank · unranked

4 citations

Daniel J. Rosenberg, Mateusz Wilamowski, A. Joachimiak, Greg L. Hura, Michal Hammel +1 more

Time-resolved β-lactam cleavage by L1 metallo-β-lactamase

Nature Communications(2022)10.1038/s41467-022-35029-3

N/A

0DataRank · unranked

28 citations

D.A. Sherrell, Youngchang Kim, Alex Lavens, Robert Henning, K. Lazarski +8 more

Proteolytic processing induces a conformational switch required for antibacterial toxin delivery

Nature Communications(2022)10.1038/s41467-022-32795-y

N/A

0DataRank · unranked

11 citations

Victor J. Passanisi, K. Michalska, Ki‐Ho Song, Dinh Q. Nhan, Hongjun Zhou +16 more

Fixed-target serial crystallography at the Structural Biology Center

Journal of Synchrotron Radiation(2022)10.1107/s1600577522007895

N/A

0DataRank · unranked

15 citations

Alex Lavens, Mateusz Wilamowski, Youngchang Kim, Ryan Chard, Krzysztof Lazarski +10 more

Time-Resolved β-lactam Cleavage by L1 Metallo-β-Lactamase

Research Square(2022)10.21203/rs.3.rs-1514248/v1

N/A

0DataRank · unranked

2 citations

Mateusz Wilamowski, D.A. Sherrell, Youngchang Kim, Alex Lavens, Robert H. Henning +8 more

Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

Nature Communications(2023)10.1038/s41467-023-38031-5

N/A

0DataRank · unranked

72 citations

J. Osipiuk, Benjamin T. Lanham, C. Tesar, M. Endres, Elizabeth Engle +8 more

Structure-based design of SARS-CoV-2 papain-like protease inhibitors

European Journal of Medicinal Chemistry(2023)10.1016/j.ejmech.2023.116011

N/A

0DataRank · unranked

21 citations

Bo Huang, J. Osipiuk, Xiaoming Zhang, Haozhou Tan, C. Tesar +8 more

Sel1-like proteins and peptides are the major Oxalobacter formigenes-derived factors stimulating oxalate transport by human intestinal epithelial cells

American Journal of Physiology-Cell Physiology(2023)10.1152/ajpcell.00466.2021

N/A

0DataRank · unranked

8 citations

Changsoo Chang, Altayeb Alshaikh, C. Tesar, G. Babnigg, Don Wolfgeher +9 more

Native Mass Spectrometry Dissects the Structural Dynamics of an Allosteric Heterodimer of SARS-CoV-2 Nonstructural Proteins

ChemRxiv(2023)10.26434/chemrxiv-2023-hjnxh

N/A

0DataRank · unranked

1 citations

Deseree Reid, Jesse Wilson, Rohith Varikoti, Natalia Maltseva, Katherine Schultz +6 more

A high-throughput structural system biology approach to increase structure representation of proteins from Clostridioides difficile

Microbiology Resource Announcements(2023)10.1128/mra.00507-23

Top 100%

0DataRank

Top 100%0 citations

Supratim Dey, G. Minasov, Kemin Tan, Spencer Anderson, J.S. Brunzelle +13 more

Molecular basis for dual functions in pilus assembly modulated by the lid of a pilus-specific sortase

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.05.565703

N/A

0DataRank · unranked

0 citations

HyLam Ton-That, J. Osipiuk, A. Joachimiak, Asis Das, Hung Ton‐That +1 more

Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature

IUCrJ(2024)10.1107/s2052252524007784

N/A

0DataRank · unranked

6 citations

Mirosław Gilski, Changsoo Chang, Dominika Borek, G. Rosenbaum, Alex Lavens +6 more

A Structurally Diverse Compound Screening Library to Identify Substrates for Diamine, Polyamine, and Related Acetyltransferases

ACS Omega(2024)10.1021/acsomega.4c08743

N/A

0DataRank · unranked

2 citations

Pamela L. Caro De Silva, Ron Painter, Van Thi Bich Le, Patricia Uychoco, Daniel Figueroa Paniagua +5 more

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1

N/A

0DataRank · unranked

2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

Nα-acetyl-L-ornithine deacetylase from Escherichia coli and a ninhydrin-based assay to enable inhibitor identification

Frontiers in Chemistry(2024)10.3389/fchem.2024.1415644

N/A

0DataRank · unranked

0 citations

J. Osipiuk, Małgorzata Korbas, M. Endres, Alayna Bland, Victoria Ehrman +4 more

N-terminal domain swapping: A new paradigm for spermidine/spermine N-acetyltransferase (SSAT) protein structures?

Biochemical and Biophysical Research Communications(2025)10.1016/j.bbrc.2025.151302

N/A

0DataRank · unranked

2 citations

Daniel Figueroa Paniagua, N. Maltseva, Youngchang Kim, Van Thi Bich Le, A. Joachimiak +2 more

Different chemical scaffolds bind to L-phe site in Mycobacterium tuberculosis Phe-tRNA synthetase

European Journal of Medicinal Chemistry(2025)10.1016/j.ejmech.2025.117335

N/A

0DataRank · unranked

1 citations

Changsoo Chang, Denise S Pryde, Daniel A. Fletcher, Sarah Niven, Luma G. Magalhães +11 more

Correction to “A Structurally Diverse Compound Screening Library to Identify Substrates for Diamine, Polyamine, and Related Acetyltransferases”

ACS Omega(2025)10.1021/acsomega.5c06099

N/A

0DataRank · unranked

0 citations

Pamela L. Caro De Silva, Ron Painter, Van Thi Bich Le, Patricia Uychoco, Daniel Figueroa Paniagua +5 more

Functional and Structural Studies on the Esperamicin Thioesterase and Progress toward Understanding Enediyne Core Biosynthesis

Journal of Natural Products(2025)10.1021/acs.jnatprod.5c00660

N/A

0DataRank · unranked

0 citations

Mitchell D. Miller, Abigael J. Kosgei, Weijun Xu, Kemin Tan, M. Endres +7 more

Potent and Selective Covalent Inhibition of the Papain-like Protease from SARS-CoV-2

Research Square(2022)10.21203/rs.3.rs-906621/v2

N/A

0DataRank · unranked

0 citations

Suman Pokhrel, Audrey Labbé, Irimpan I. Mathews, Connor J. Cooper, Russell B. Davidson +28 more

Crystal structure of a putative transcriptional regulator (TetR/AcrR family member) from putative transcriptional regulator (TetR/AcrR family)

Worldwide Protein Data Bank(2010)10.2210/pdb3knw/pdb

N/A

0DataRank · unranked

0 citations

L. Bigelow, G. Cobb, A. Joachimiak, B. Nocek

Structural plasticity of SARS-CoV-2 3CL Mpro active site cavity revealed by room temperature X-ray crystallography

Nature Communications(2020)10.1038/s41467-020-16954-7

N/A

0DataRank · unranked

499 citations

G.N. Phillips, Hugh O’Neill, R. Jedrzejczak, Lucy Stols, Paul Langan +4 more

Crystal structure of Nsp15 endoribonuclease NendoU from SARS‐CoV ‐2

Protein Science(2020)10.1002/pro.3873

N/A

0DataRank · unranked

367 citations

R. Jedrzejczak, N. Maltseva, Mateusz Wilamowski, M. Endres, Adam Godzik +3 more

Therapeutic genetic variation revealed in diverse Hsp104 homologs

eLife(2020)10.7554/elife.57457

N/A

0DataRank · unranked

29 citations

Katelyn Sweeney, Hanna Kim, Xiaohui Yan, Laura M. Castellano, Meredith E. Jackrel +12 more

Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains

Current Research in Structural Biology(2020)10.1016/j.crstbi.2020.01.002

N/A

0DataRank · unranked

23 citations

Min Zhou, R. Jedrzejczak, Ruiying Wu, Raul Higuera, Dominika Borek +3 more

3D domain swapping in the TIM barrel of the α subunit ofStreptococcus pneumoniaetryptophan synthase

Acta Crystallographica Section D Structural Biology(2020)10.1107/s2059798320000212

N/A

0DataRank · unranked

8 citations

Marcin Kowiel, L. Bigelow, M. Endres, Mirosław Gilski, Mariusz Jaskólski +2 more

Crystal structure of Nsp15 endoribonuclease NendoU from SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.02.968388

N/A

0DataRank · unranked

79 citations

R. Jedrzejczak, N. Maltseva, M. Endres, Adam Godzik, K. Michalska +2 more

Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.26.173872

N/A

0DataRank · unranked

31 citations

Jacek Wower, N. Maltseva, Changsoo Chang, R. Jedrzejczak, Mateusz Wilamowski +6 more

SARS-CoV-2 infection severity is linked to superior humoral immunity against the spike

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.12.294066

N/A

0DataRank · unranked

25 citations

Olivia Stovicek, Jiaolong Wang, Siriruk Changrob, Lei Li, Peter Halfmann +20 more

Distinct B cell subsets give rise to antigen-specific antibody responses against SARS-CoV-2

Research Square(2020)10.21203/rs.3.rs-80476/v1

N/A

0DataRank · unranked

24 citations

Christopher T. Stamper, Haley L. Dugan, Lei Li, Nicholas Asby, Peter Halfmann +22 more

Crystal structures of SARS-CoV-2 ADP-ribose phosphatase (ADRP): from the apo form to ligand complexes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.14.096081

N/A

0DataRank · unranked

14 citations

Youngchang Kim, R. Jedrzejczak, N. Maltseva, Lucy Stols, M. Endres +2 more

Therapeutic genetic variation revealed in diverse Hsp104 homologs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.25.008748

N/A

0DataRank · unranked

2 citations

Katelyn Sweeney, Hanna Kim, Xiaohui Yan, Laura M. Castellano, Meredith E. Jackrel +10 more

Structure of Mycobacterium tuberculosis Phe-tRNA synthetase reveals ligand binding and two-stage tRNA recognition

Research Square(2020)10.21203/rs.3.rs-89886/v1

N/A

0DataRank · unranked

0 citations

R. Jedrzejczak, Jacek Wower, Changsoo Chang, Beatriz Baragaña, Ian H. Gilbert +3 more

A. Joachimiak

Indexed papers

Top data-sharing exemplar

Papers