Xavier Darzacq

Also affiliated with University of California, Berkeley

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 41 papers. Top paper: “Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding”.

Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding

Molecular Cell(2020)10.1016/j.molcel.2020.03.002

N/A

8.2DataRank · unranked

692 citations

Claudia Cattoglio, Elena Slobodyanyuk, Anders S. Hansen, Oliver J. Rando, Robert Tjian +2 more

A common sequence motif determines the Cajal body‐specific localization of box H/ACA scaRNAs

The EMBO Journal(2003)10.1093/emboj/cdg394

N/A

7.4DataRank · unranked

208 citations

Xavier Darzacq, Edouard Bertrand, Beáta E. Jády, Céline Verheggen, Tamás Kiss +1 more

Cohesin residency determines chromatin loop patterns

eLife(2020)10.7554/elife.59889

N/A

3.1DataRank · unranked

116 citations

Tsung-Han S. Hsieh, Rebecca Lamothe, Xavier Darzacq, Douglas Koshland, Lorenzo Costantino

Mechanisms governing target search and binding dynamics of hypoxia-inducible factors

eLife(2022)10.7554/elife.75064

N/A

1.6DataRank · unranked

65 citations

Claudia Cattoglio, Gina M. Dailey, Qiulin Zhu, Robert Tjian, Xavier Darzacq +1 more

Surprising features of nuclear receptor interaction networks revealed by live-cell single-molecule imaging

eLife(2025)10.7554/elife.92979.3

N/A

0.330DataRank · unranked

8 citations

Thomas G.W. Graham, Gina M. Dailey, Alec Heckert, Robert Tjian, Xavier Darzacq +1 more

Short activation domains control chromatin association of transcription factors

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.20.629816

N/A

0.207DataRank · unranked

2 citations

Abrar A. Abidi, Thomas G.W. Graham, Xavier Darzacq, Max V. Staller, Vinson B. Fan

Selective Activation of Alternative MYC Core Promoters by Wnt-Responsive Enhancers

Genes(2018)10.3390/genes9060270

N/A

0.165DataRank · unranked

2 citations

Evin Wieser, Hideya Kawaji, Yasuhiro Murakawa, Xavier Darzacq, Jorge A. Bardales

The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer–promoter communication

Genes & Development(2021)10.1101/gad.349160.121

N/A

0DataRank · unranked

168 citations

John J. Ferrie, Robert Tjian, Xavier Darzacq, Jonathan P. Karr

Structure of the human SAGA coactivator complex: The divergent architecture of human SAGA allows modular coordination of transcription activation and co-transcriptional splicing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.08.430339

N/A

0DataRank · unranked

13 citations

Meagan N. Esbin, Robert K. Louder, Claire Dugast‐Darzacq, Gina M. Dailey, Qianglin Fang +4 more

RNA polymerase II depletion from the inactive X chromosome territory is not mediated by physical compartmentalization

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.26.437188

N/A

0DataRank · unranked

13 citations

Isabell Rall, Claire Dugast‐Darzacq, Alec Heckert, Aliaksandr Halavatyi, Agnès Le Saux +4 more

Tuning levels of low-complexity domain interactions to modulate endogenous oncogenic transcription

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.16.456551

N/A

0DataRank · unranked

11 citations

Thomas G.W. Graham, Claire Dugast‐Darzacq, Gina M. Dailey, Xavier Darzacq, Robert Tjian +1 more

Recovering mixtures of fast diffusing states from short single particle trajectories

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.03.442482

N/A

0DataRank · unranked

10 citations

Liza Dahal, Robert Tjian, Xavier Darzacq, Alec Heckert

Mechanisms Governing Target Search and Binding Dynamics of Hypoxia-Inducible Factors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466110

N/A

0DataRank · unranked

6 citations

Claudia Cattoglio, Gina M. Dailey, Qiulin Zhu, Robert Tjian, Xavier Darzacq +1 more

Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1

Nature Genetics(2022)10.1038/s41588-022-01223-8

N/A

0DataRank · unranked

425 citations

Claudia Cattoglio, Elena Slobodyanyuk, Anders S. Hansen, Xavier Darzacq, Robert Tjian +1 more

Tuning levels of low-complexity domain interactions to modulate endogenous oncogenic transcription

Molecular Cell(2022)10.1016/j.molcel.2022.04.007

N/A

0DataRank · unranked

217 citations

Thomas G.W. Graham, Claire Dugast‐Darzacq, Gina M. Dailey, Xavier Darzacq, Robert Tjian +1 more

“Structure”-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulation

Molecular Cell(2022)10.1016/j.molcel.2022.09.021

N/A

0DataRank · unranked

150 citations

Jonathan P. Karr, Robert Tjian, Xavier Darzacq, John J. Ferrie

Recovering mixtures of fast-diffusing states from short single-particle trajectories

eLife(2022)10.7554/elife.70169

N/A

0DataRank · unranked

102 citations

Liza Dahal, Robert Tjian, Xavier Darzacq, Alec Heckert

Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA)

eLife(2022)10.7554/elife.76870

N/A

0DataRank · unranked

41 citations

John J. Ferrie, Gina M. Dailey, Robert Tjian, Xavier Darzacq, Thomas G.W. Graham

p300 is an obligate integrator of combinatorial transcription factor inputs

Molecular Cell(2023)10.1016/j.molcel.2023.12.004

N/A

0DataRank · unranked

53 citations

Jonathan P. Karr, Thomas G.W. Graham, Gina M. Dailey, Gloria Zhang, Robert Tjian +2 more

Single-molecule tracking (SMT): a window into live-cell transcription biochemistry

Biochemical Society Transactions(2023)10.1042/bst20221242

N/A

0DataRank · unranked

42 citations

Nike Walther, Robert Tjian, Xavier Darzacq, Thomas G.W. Graham, Liza Dahal

RNA polymerase II depletion from the inactive X chromosome territory is not mediated by physical compartmentalization

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01008-5

N/A

0DataRank · unranked

38 citations

Isabell Rall, Claire Dugast‐Darzacq, Alec Heckert, Aliaksandr Halavatyi, Agnès Le Saux +4 more

A novel pathogenic mutation of MeCP2 impairs chromatin association independent of protein levels

Genes & Development(2023)10.1101/gad.350733.123

N/A

0DataRank · unranked

16 citations

Claudia Cattoglio, Yingyao Shao, Harini P Tirumala, Carlo Vetralla, Sameer S. Bajikar +19 more

p300 Is an Obligate Integrator of Combinatorial Transcription Factor Inputs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.18.541220

N/A

0DataRank · unranked

3 citations

Jonathan P. Karr, Thomas G.W. Graham, Gina M. Dailey, Gloria Zhang, Robert Tjian +2 more

Surprising features of nuclear receptor interaction networks revealed by live-cell single-molecule imaging

eLife(2023)10.7554/elife.92979

N/A

0DataRank · unranked

3 citations

Thomas G.W. Graham, Gina M. Dailey, Alec Heckert, Robert Tjian, Xavier Darzacq +1 more

Surprising Features of Nuclear Receptor Interaction Networks Revealed by Live Cell Single Molecule Imaging

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.16.558083

N/A

0DataRank · unranked

2 citations

Thomas G.W. Graham, Gina M. Dailey, Alec Heckert, Robert Tjian, Xavier Darzacq +1 more

Surprising Features of Nuclear Receptor Interaction Networks Revealed by Live Cell Single Molecule Imaging

(2023)10.7554/elife.92979.1

N/A

0DataRank · unranked

2 citations

Thomas G.W. Graham, Gina M. Dailey, Alec Heckert, Robert Tjian, Xavier Darzacq +1 more

Reviewer #3 (Public Review): Surprising Features of Nuclear Receptor Interaction Networks Revealed by Live Cell Single Molecule Imaging

(2023)10.7554/elife.92979.1.sa0

N/A

0DataRank · unranked

0 citations

Thomas G.W. Graham, Gina M. Dailey, Alec Heckert, Robert Tjian, Xavier Darzacq +1 more

Live-cell imaging of RNA Pol II and elongation factors distinguishes competing mechanisms of transcription regulation

Molecular Cell(2024)10.1016/j.molcel.2024.07.009

N/A

0DataRank · unranked

13 citations

Thomas G.W. Graham, Vincent F. Eng, Jonathan Ebenezer, Xavier Darzacq, Warren R. Zipfel +2 more

Small-molecule disruption of androgen receptor–dependent chromatin clusters

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2406239121

N/A

0DataRank · unranked

4 citations

EK Novak, Subhashish Tapadar, Bocheng Wu, Jonathan D. Strope, Yaw Asante +25 more

TFEB controls expression of human syncytins during cell-cell fusion.

PubMed(2024)10.1101/gad.351633.124

N/A

0DataRank · unranked

9 citations

Liza Dahal, Vinson B. Fan, Joey McKenna, Eric Yin, Xavier Darzacq +2 more

Surprising Features of Nuclear Receptor Interaction Networks Revealed by Live Cell Single Molecule Imaging

eLife(2024)10.7554/elife.92979.2

N/A

0DataRank · unranked

1 citations

Thomas G.W. Graham, Gina M. Dailey, Alec Heckert, Robert Tjian, Xavier Darzacq +1 more

Bis(trifluoromethyl)carborhodamines: Highly Fluorogenic, Far-Red to Near-Infrared Dyes for Live Cell Fluorescence Microscopy, Activity-Based Sensing, and Single-Molecule Microscopy

Journal of the American Chemical Society(2025)10.1021/jacs.5c05473

N/A

0DataRank · unranked

12 citations

Jack T. McCann, Julia G. Martin, Katharine M. Henn, Kathrin Riske, Sathvik Anantakrishnan +4 more

Single-molecule live imaging of subunit interactions and exchange within cellular regulatory complexes

Molecular Cell(2025)10.1016/j.molcel.2025.06.028

N/A

0DataRank · unranked

8 citations

Claire Dugast‐Darzacq, Gina M. Dailey, Britney Weng, Sathvik Anantakrishnan, Xavier Darzacq +2 more

Double-strand break repair pathways differentially affect processing and transduction by dual AAV vectors

Nature Communications(2025)10.1038/s41467-025-56738-5

N/A

0DataRank · unranked

6 citations

Brian Benyamini, Oscar N. Whitney, Vinson B. Fan, Claudia Cattoglio, Djem Kissiov +5 more

Elevated MyoD1 levels expand genome-wide binding and the repertoire of regulated genes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.13.688391

N/A

0DataRank · unranked

0 citations

Gina M. Dailey, Joseph K. McKenna, Xavier Darzacq, Robert Tjian, Oscar N. Whitney

Selective activation of alternative MYC core promoters by Wnt-responsive enhancers

bioRxiv (Cold Spring Harbor Laboratory)10.1101/266387

N/A

0DataRank · unranked

0 citations

Evin Wieser, Hideya Kawaji, Yasuhiro Murakawa, Xavier Darzacq, Jorge A. Bardales

Overcoming the bottleneck to widespread testing: a rapid review of nucleic acid testing approaches for COVID-19 detection

RNA(2020)10.1261/rna.076232.120

N/A

0DataRank · unranked

533 citations

Oscar N. Whitney, Shasha Chong, Anna C. Maurer, Xavier Darzacq, Robert Tjian +1 more

The Histone Chaperone FACT Induces Cas9 Multi-turnover Behavior and Modifies Genome Manipulation in Human Cells

Molecular Cell(2020)10.1016/j.molcel.2020.06.014

N/A

0DataRank · unranked

54 citations

Leo C. Chen, R. Alex Wu, Yvonne Hao, David T. McSwiggen, Alec Heckert +10 more

Estimating Cellular Abundances of Halo-tagged Proteins in Live Mammalian Cells by Flow Cytometry

BIO-PROTOCOL(2020)10.21769/bioprotoc.3527

N/A

0DataRank · unranked

8 citations

Xavier Darzacq, Robert Tjian, Anders S. Hansen, Claudia Cattoglio

Assessing Self-interaction of Mammalian Nuclear Proteins by Co-immunoprecipitation

BIO-PROTOCOL(2020)10.21769/bioprotoc.3526

N/A

0DataRank · unranked

5 citations

Iryna Pustova, Xavier Darzacq, Robert Tjian, Anders S. Hansen, Claudia Cattoglio

Structure of the human SAGA coactivator complex

Nature Structural & Molecular Biology(2021)10.1038/s41594-021-00682-7

N/A

0DataRank · unranked

72 citations

Meagan N. Esbin, Robert K. Louder, Claire Dugast‐Darzacq, Gina M. Dailey, Qianglin Fang +4 more