Xi Chen

Also affiliated with Hong Kong Baptist University, South China Normal University, Southern University of Science and Technology, Sichuan Agricultural University, Sunnyvale Public Library, Third Affiliated Hospital of Southern Medical University, General Hospital of Guangzhou Military Command

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming”.

Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming

Nature Communications(2020)10.1038/s41467-020-16416-0

N/A

0.680DataRank · unranked

92 citations

Wenjing Shen, Xu Shi, Xi Chen, Yu Yu, Zheng-Cheng Yu +13 more

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data

Nature Computational Science(2023)10.1038/s43588-023-00476-5

N/A

0.510DataRank · unranked

29 citations

Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf-Zamojski, Venugopalan D. Nair +23 more

Peak-agnostic high-resolution cis-regulatory circuitry mapping using single cell multiome data

Nucleic Acids Research(2023)10.1093/nar/gkad1166

N/A

0.448DataRank · unranked

9 citations

Frederique Ruf-Zamojski, Michel Zamojski, Daniel J. Bernard, Xi Chen, Olga G. Troyanskaya +2 more

Distinct systemic impacts of Aβ42 and Tau revealed by whole-organism snRNA-seq

Neuron(2025)10.1016/j.neuron.2025.04.017

N/A

0.442DataRank · unranked

18 citations

Tzu‐Chiao Lu, Tyler Jackson, Lindsey D. Goodman, L. Ran, Jiaye Chen +15 more

A machine-readable specification for genomics assays

Bioinformatics(2024)10.1093/bioinformatics/btae168

N/A

0.385DataRank · unranked

12 citations

Xi Chen, Lior Pachter, A. Sina Booeshaghi

PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines

Computational and Structural Biotechnology Journal(2021)10.1016/j.csbj.2021.05.013

N/A

0.292DataRank · unranked

6 citations

Zhigang Zhang, Xi Chen, Xiaobo Zhou, Jacqueline Chyr

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data

medRxiv(2022)10.1101/2022.12.06.22282077

N/A

0.231DataRank · unranked

3 citations

Yuan Wang, Antonio Cappuccio, Wan-Sze Cheng, Frederique Ruf Zamojski, Venugopalan D. Nair +23 more

Modeling combinatorial regulation from single-cell multi-omics provides regulatory units underpinning cell type landscape using cRegulon

Genome biology(2025)10.1186/s13059-025-03680-w

N/A

0.104DataRank · unranked

1 citations

Xi Chen, Zhana Duren, Jingxue Xin, Miao Hao, Qiuyue Yuan +3 more

scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection

Nature Communications(2023)10.1038/s41467-023-36066-2

N/A

0DataRank · unranked

67 citations

Haoran Sun, Ragunathan Mariappan, Xi Chen, Xinyu Chen, Mika Sarkin Jain +5 more

scMultiSim: simulation of multi-modality single cell data guided by cell-cell interactions and gene regulatory networks

Research Square(2023)10.21203/rs.3.rs-2675530/v1

N/A

0DataRank · unranked

12 citations

Ziqi Zhang, Michael Squires, Xi Chen, Xiuwei Zhang, Hechen Li

A machine-readable specification for genomics assays

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.17.533215

N/A

0DataRank · unranked

9 citations

Xi Chen, Lior Pachter, A. Sina Booeshaghi

scMultiSim: simulation of single cell multi-omics and spatial data guided by gene regulatory networks and cell-cell interactions

Research Square(2023)10.21203/rs.3.rs-3301625/v1

N/A

0DataRank · unranked

6 citations

Hechen Li, Ziqi Zhang, Michael Squires, Xi Chen, Xiuwei Zhang

scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.18.541381

N/A

0DataRank · unranked

3 citations

Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin +4 more

Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE

Genome Research(2023)10.1101/gr.277960.123

N/A

0DataRank · unranked

3 citations

Tung-Yu Wu, Xi Chen, Sheng Wan, Brian Chao, Jingxue Xin +4 more

Long-term expandable mouse and human-induced nephron progenitor cells enable kidney organoid maturation and modeling of plasticity and disease

Cell stem cell(2024)10.1016/j.stem.2024.04.002

N/A

0DataRank · unranked

45 citations

Zipeng Zeng, Sung‐Hyun Kim, Connor C. Fausto, Kari Koppitch, Hui Li +28 more

Identification of maize genes that condition early systemic infection of sugarcane mosaic virus through single-cell transcriptomics

Plant Communications(2025)10.1016/j.xplc.2025.101297

N/A

0DataRank · unranked

6 citations

Ru Yao, Hua Xia, Kaitong Du, Boxin Liu, Yongxian Yuan +7 more

Human stem cells with in vivo high plasticity generated by cell–cell communication

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2413043122

N/A

0DataRank · unranked

2 citations

Xi Chen, Jingxue Xin, Bowen Liu, Bo Liu, Min Hu +2 more

GSK3α negatively regulates GSK3β by decreasing its protein levels and enzymatic activity in mouse embryonic stem cells

Stem Cell Reports(2025)10.1016/j.stemcr.2025.102512

N/A

0DataRank · unranked

2 citations

Xi Chen, Joshua Feng, Xueyuan A. Jing, Jiaqi Tang, Jean Paul Chadarevian +6 more

Selective GSK3α Inhibition Promotes Self-Renewal Across Different Stem Cell States

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.16.653860

N/A

0DataRank · unranked

1 citations

Xiukun Wang, Shuling Wang, Kai‐Xuan Shi, Safia Malki, Yanpui Chan +8 more

BICORN: An R package for integrative inference of de novo cis-regulatory modules

Scientific Reports(2020)10.1038/s41598-020-63043-2

N/A

0DataRank · unranked

6 citations

Jinghua Gu, Andrew F. Neuwald, Leena Hilakivi‐Clarke, Robert Clarke, Jianhua Xuan +1 more

Time course regulatory analysis based on paired expression and chromatin accessibility data

Genome Research(2020)10.1101/gr.257063.119

N/A

0DataRank · unranked

64 citations

Xi Chen, Jingxue Xin, Yong Wang, Wing Hung Wong, Zhana Duren

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

BMC Bioinformatics(2021)10.1186/s12859-021-04108-5

N/A

0DataRank · unranked

1 citations

Xu Shi, Andrew F. Neuwald, Leena Hilakivi‐Clarke, Robert Clarke, Jianhua Xuan +1 more

Robust transcriptional profiling and identification of differentially expressed genes with low input RNA sequencing of adult hippocampal neural stem and progenitor populations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.07.467608

N/A

0DataRank · unranked

1 citations

Logan A. Walker, Xi Chen, Altan Turkoglu, Alex Pan, Zoe M. Tapp +7 more

Transcriptional profiling of human Vδ1 T cells reveals a pathogen-driven adaptive differentiation program

Cell Reports(2022)10.1016/j.celrep.2022.110858

N/A

0DataRank · unranked

52 citations

Anouk von Borstel, Taher E. Taher, Eleni Syrimi, Graham S. Taylor, Maria Sharif +15 more

Robust Transcriptional Profiling and Identification of Differentially Expressed Genes With Low Input RNA Sequencing of Adult Hippocampal Neural Stem and Progenitor Populations

Frontiers in Molecular Neuroscience(2022)10.3389/fnmol.2022.810722

N/A

0DataRank · unranked

23 citations

Logan A. Walker, Xi Chen, Altan Turkoglu, Alex Pan, Zoe M. Tapp +7 more

scMultiSim: simulation of multi-modality single cell data guided by cell-cell interactions and gene regulatory networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.15.512320

N/A

0DataRank · unranked

11 citations

Ziqi Zhang, Michael Squires, Xi Chen, Xiuwei Zhang, Hechen Li