🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Melanie Loth

University of Pennsylvania

ORCID: 0000-0003-2717-8258
Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.459Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

CD137 agonism enhances anti-PD1 induced activation of expanded CD8+ T cell clones in a neoadjuvant pancreatic cancer clinical trial

iScience(2024)10.1016/j.isci.2024.111569
Top 41%
0.459DataRank
Top 41%15 citations

Jacob T. Mitchell, Joseph A. Tandurella, Eric S. Christenson, Ludmila Danilova, Atul Deshpande +29 more

Papers

Driven by 12 papers — median percentile 59. Top paper: “Transfer Learning Reveals Cancer-Associated Fibroblasts Are Associated with Epithelial–Mesenchymal Transition and Inflammation in Cancer Cells in Pancreatic Ductal Adenocarcinoma”.

Transfer Learning Reveals Cancer-Associated Fibroblasts Are Associated with Epithelial–Mesenchymal Transition and Inflammation in Cancer Cells in Pancreatic Ductal Adenocarcinoma

Cancer Research(2024)10.1158/0008-5472.can-23-1660
N/A
0.867DataRank · unranked
44 citations

Benedict Kinny‐Köster, Joseph A. Tandurella, Jacob T. Mitchell, Dimitrios N. Sidiropoulos, Melanie Loth +29 more

DPP inhibition alters the CXCR3 axis and enhances NK and CD8+ T cell infiltration to improve anti-PD1 efficacy in murine models of pancreatic ductal adenocarcinoma

Journal for ImmunoTherapy of Cancer(2021)10.1136/jitc-2021-002837
N/A
0.661DataRank · unranked
81 citations

Shangzi Wang, Veena R. Agarwal, Emily F. Davis-Marcisak, Annie Zuo, Sandra A. Jablonski +9 more

Resolving tissue complexity by multimodal spatial omics modeling with MISO

Nature Methods(2025)10.1038/s41592-024-02574-2
N/A
0.641DataRank · unranked
71 citations

Amelia Schroeder, Melanie Loth, Daiwei Zhang, Jeong Hwan Park, Ji‐Youn Sung +23 more

Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces

Cell Systems(2023)10.1016/j.cels.2023.03.004
N/A
0.557DataRank · unranked
40 citations

Melanie Loth, Dimitrios N. Sidiropoulos, Shuming Zhang, Long Yuan, Alexander T.F. Bell +25 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

Nature Protocols(2023)10.1038/s41596-023-00892-x
N/A
0.489DataRank · unranked
25 citations

Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak +13 more

CD137 agonism enhances anti-PD1 induced activation of expanded CD8+ T cell clones in a neoadjuvant pancreatic cancer clinical trial

iScience(2024)10.1016/j.isci.2024.111569
Top 41%
0.459DataRank
Top 41%15 citations

Jacob T. Mitchell, Joseph A. Tandurella, Eric S. Christenson, Ludmila Danilova, Atul Deshpande +29 more

Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02433-9
N/A
0.436DataRank · unranked
15 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Inflammatory Signaling in Pancreatic Cancer Transfers Between a Single-cell RNA Sequencing Atlas and Co-Culture

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.14.500096
N/A
0.360DataRank · unranked
10 citations

Samantha Guinn, Joseph A. Tandurella, Jacob T. Mitchell, Dimitrios N. Sidiropoulos, Melanie Loth +24 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499398
N/A
0.292DataRank · unranked
6 citations

Ashley Tsang, Jacob T. Mitchell, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld +11 more

Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/96cj-z232
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/vzc0-qk25
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02468-y
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more