David N. Fredricks

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with University of Washington, Fred Hutch Cancer Center

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 39 papers. Top paper: “Association between postmenopausal vulvovaginal discomfort, vaginal microbiota, and mucosal inflammation”.

Association between postmenopausal vulvovaginal discomfort, vaginal microbiota, and mucosal inflammation

American Journal of Obstetrics and Gynecology(2021)10.1016/j.ajog.2021.02.034

N/A

1.8DataRank · unranked

58 citations

Nanxun Ma, Alissa J. Mitchell, Michael C. Wu, Daniel Valint, Sean Proll +9 more

Impact of Topical Interventions on the Vaginal Microbiota and Metabolome in Postmenopausal Women

JAMA Network Open(2022)10.1001/jamanetworkopen.2022.5032

N/A

1.3DataRank · unranked

32 citations

Xing Hua, Michael C. Wu, Sean Proll, D. J. Valint, Susan D. Reed +9 more

Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome

mSystems(2020)10.1128/msystems.00777-19

N/A

0.691DataRank · unranked

99 citations

Sujatha Srinivasan, Anthony Lopez, Noah G. Hoffman, Sean Proll, David N. Fredricks +2 more

Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities

BMC Bioinformatics(2017)10.1186/s12859-017-1690-0

N/A

0.655DataRank · unranked

78 citations

Elisa Margolis, Noah G. Hoffman, David N. Fredricks, Jonathan L. Golob

Intestinal microbiota controls graft-versus-host disease independent of donor-host genetic disparity

Immunity(2023)10.1016/j.immuni.2023.06.024

N/A

0.587DataRank · unranked

49 citations

Daniel S. Hippe, Sujatha Srinivasan, Sean Proll, Oriana Miltiadous, Naisi Li +21 more

Amygdalobacter indicium gen. nov., sp. nov., and Amygdalobacter nucleatus sp. nov., gen. nov.: novel bacteria from the family Oscillospiraceae isolated from the female genital tract

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY(2023)10.1099/ijsem.0.006017

N/A

0.416DataRank · unranked

15 citations

Michele N. Austin, Tina L. Fiedler, Susan Strenk, Kathy Agnew, G. A. Nagana Gowda +7 more

Association between vaginal microbiota and vaginal inflammatory immune markers in postmenopausal women

Menopause The Journal of The North American Menopause Society(2024)10.1097/gme.0000000000002362

N/A

0.330DataRank · unranked

8 citations

Hoseung Song, Sujatha Srinivasan, David N. Fredricks, Susan D. Reed, Katherine A. Guthrie +3 more

Syntrophic bacterial and host–microbe interactions in bacterial vaginosis

The ISME Journal(2025)10.1093/ismejo/wraf055

N/A

0.312DataRank · unranked

7 citations

Sujatha Srinivasan, Samuel Purvine, Tina L. Fiedler, Owen P. Leiser, Sean Proll +7 more

Influence of Intramuscular Depot Medroxyprogesterone Acetate Initiation on Vaginal Microbiota in the Postpartum Period

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1876

N/A

0.312DataRank · unranked

7 citations

Sujatha Srinivasan, Kenneth Tapia, Eric Munene Muriuki, Bhavna Chohan, Jacqueline Mae Wallis +7 more

Vaginal bacteria elicit acute inflammatory response in fallopian tube organoids: a model for pelvic inflammatory disease

Research Square(2023)10.21203/rs.3.rs-2891189/v1

N/A

0.165DataRank · unranked

2 citations

Stephen A. McCartney, Susan M. Strenk, Daniel J. Valint, Congzhou Liu, Catherine L. Haggerty +2 more

Vaginal bacteria elicit acute inflammatory response in fallopian tube organoids: a model for pelvic inflammatory disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.06.527402

N/A

0.165DataRank · unranked

2 citations

Edward B. Nguyen, Stephen A. McCartney, Susan M. Strenk, D. J. Valint, Congzhou Liu +3 more

Effect of metronidazole on concentrations of vaginal bacteria associated with risk of HIV acquisition

mBio(2024)10.1128/mbio.01110-24

N/A

0.165DataRank · unranked

2 citations

Tina L. Fiedler, Congzhou Liu, Sujatha Srinivasan, David N. Fredricks, D. J. Valint

Exposure to antibiotics with anaerobic activity before respiratory viral infection is associated with respiratory disease progression after hematopoietic cell transplant

Bone Marrow Transplantation(2022)10.1038/s41409-022-01790-8

N/A

0DataRank · unranked

9 citations

Elizabeth M. Krantz, Jonathan L. Golob, Catherine Liu, Alpana Waghmare, Ashley Akramoff +9 more

IgA coating of vaginal bacteria is reduced in the setting of bacterial vaginosis (BV) and preferentially targets BV-associated species

Infection and Immunity(2023)10.1128/iai.00373-23

N/A

0DataRank · unranked

10 citations

Matthew S. Gromisch, Sujatha Srinivasan, Tao Wang, Lianna Wood, Sean Proll +7 more

Vaginal Bacteria Elicit Acute Inflammatory Response in Fallopian Tube Organoids

Reproductive Sciences(2023)10.1007/s43032-023-01350-5

N/A

0DataRank · unranked

9 citations

Stephen A. McCartney, Susan Strenk, Daniel J. Valint, Congzhou Liu, Catherine L. Haggerty +2 more

Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome

mSystems(2023)10.1128/msystems.00678-22

N/A

0DataRank · unranked

8 citations

Sujatha Srinivasan, Samuel Purvine, Tina L. Fiedler, Owen P. Leiser, Sean Proll +4 more

Identification of fallopian tube microbiota and its association with ovarian cancer

eLife(2023)10.7554/elife.89830

N/A

0DataRank · unranked

8 citations

Congzhou Liu, Sean Proll, Enna Manhardt, Shuying Liang, Sujatha Srinivasan +3 more

Changes in Vaginal Bacteria and Inflammatory Mediators From Periconception Through the Early Postpartum Period in a Cohort of Kenyan Women Without HIV

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad168

N/A

0DataRank · unranked

5 citations

Erica M. Lokken, Sujatha Srinivasan, John Kinuthia, Barbra A. Richardson, Tina L. Fiedler +8 more

Identification of fallopian tube microbiota and its association with ovarian cancer: a prospective study of intraoperative swab collections from 187 patients

medRxiv(2023)10.1101/2023.06.28.23291999

N/A

0DataRank · unranked

1 citations

Congzhou Liu, Sean Proll, Enna Mannhardt, Shuying Liang, Sujatha Srinivasan +3 more

Next generation sequencing to examine associations between vaginal washing and vaginal microbiota: A cohort study

International Journal of STD & AIDS(2023)10.1177/09564624231160806

N/A

0DataRank · unranked

0 citations

Jennifer E. Balkus, Barbra A. Richardson, Sujatha Srinivasan, Joshua Kimani, Omu Anzala +5 more

SurvBal: Compositional Microbiome Balances for Survival Outcomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.22.559069

N/A

0DataRank · unranked

0 citations

Teresa Lee, Kai Marin, Xing Hua, Sujatha Srinivasan, David N. Fredricks +3 more

Reviewer #1 (Public Review): Identification of fallopian tube microbiota and its association with ovarian cancer: a prospective study of intraoperative swab collections from 187 patients

(2023)10.7554/elife.89830.1.sa2

N/A

0DataRank · unranked

0 citations

Congzhou Liu, Sean Proll, Enna Mannhardt, Shuying Liang, Sujatha Srinivasan +3 more

Gardnerella Species and Their Association With Bacterial Vaginosis

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae026

N/A

0DataRank · unranked

37 citations

Susan Strenk, Sujatha Srinivasan, Tina L. Fiedler, Sean Proll, David N. Fredricks +1 more

Vaginal Bacteria and Proinflammatory Host Immune Mediators as Biomarkers of Human Immunodeficiency Virus Acquisition Risk Among African Women

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae406

N/A

0DataRank · unranked

14 citations

Barbra A. Richardson, Jacqueline Mae Wallis, Tina L. Fiedler, Susan Strenk, Noah G. Hoffman +7 more

Identification of fallopian tube microbiota and its association with ovarian cancer

eLife(2024)10.7554/elife.89830.3

N/A

0DataRank · unranked

7 citations

Congzhou Liu, Sean Proll, Enna Manhardt, Shuying Liang, Sujatha Srinivasan +3 more

A prospective cohort study examining the association between the periconceptual vaginal microbiota and first‐trimester miscarriage in Kenyan women

Paediatric and Perinatal Epidemiology(2024)10.1111/ppe.13099

N/A

0DataRank · unranked

4 citations

Erica M. Lokken, John Kinuthia, Sujatha Srinivasan, Barbra A. Richardson, Walter Jaoko +8 more

Identification of fallopian tube microbiota and its association with ovarian cancer: a prospective study of intraoperative swab collections from 187 patients

eLife(2024)10.7554/elife.89830.2

N/A

0DataRank · unranked

1 citations

Congzhou Liu, Sean Proll, Enna Mannhardt, Shuying Liang, Sujatha Srinivasan +3 more

Author Response: Identification of fallopian tube microbiota and its association with ovarian cancer: a prospective study of intraoperative swab collections from 187 patients

(2024)10.7554/elife.89830.2.sa3

N/A

0DataRank · unranked

0 citations

Congzhou Liu, Sean Proll, Enna Mannhardt, Shuying Liang, Sujatha Srinivasan +3 more

Bacterial Vaginosis Is Associated With Transcriptomic Changes but Not Higher Concentrations of Cervical Leukocytes in a Study of Women at High Risk for Human Immunodeficiency Virus Acquisition

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf049

N/A

0DataRank · unranked

3 citations

Salwa Sadoon Mustafa, Aparajita Saha, Brenda Oyaro, Tina L. Fiedler, Melissa A. Krueger +10 more

Umbribacter vaginalis gen. nov., sp. nov.: novel bacterium isolated from the human vagina

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY(2025)10.1099/ijsem.0.006931

N/A

0DataRank · unranked

1 citations

Susan M. Strenk, May A. Beamer, Tina L. Fiedler, Sean Proll, Gabriela R. Acevedo-Oquendo +6 more

Impact of preconception vaginal microbiota on women’s risk of spontaneous preterm birth: protocol for a prospective case-cohort study

BMJ Open(2020)10.1136/bmjopen-2019-035186

N/A

0DataRank · unranked

20 citations

Kishorchandra Mandaliya, Sujatha Srinivasan, Barbra A. Richardson, John Kinuthia, Sophia Lannon +8 more

COVID-19—Lessons Learned and Questions Remaining

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1654

N/A

0DataRank · unranked

84 citations

Constance A. Benson, Carlos del Rı́o, Kathryn M. Edwards, Vance G. Fowler, David N. Fredricks +10 more

Vaginal and Extra-Vaginal Bacterial Colonization and Risk for Incident Bacterial Vaginosis in a Population of Women Who Have Sex With Men

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa233

N/A

0DataRank · unranked

16 citations

Anna Plantinga, Sujatha Srinivasan, Antoinette Oot, Andrew Wiser, Tina L. Fiedler +4 more

Changes in key vaginal bacteria among postpartum African women initiating intramuscular depot-medroxyprogesterone acetate

PLoS ONE(2020)10.1371/journal.pone.0229586

N/A

0DataRank · unranked

14 citations

Brandon L. Guthrie, Sujatha Srinivasan, Kenneth Tapia, Eric Munene Muriuki, Bhavna Chohan +6 more

Bacterial Communities Associated With Abnormal Nugent Score in Postmenopausal Versus Premenopausal Women

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa675

N/A

0DataRank · unranked

15 citations

Sujatha Srinivasan, Nanxun Ma, Susan D. Reed, Michael C. Wu, Noah G. Hoffman +7 more

Diagnosis of infectious diseases in immunocompromised hosts using metagenomic next generation sequencing-based diagnostics

Blood Reviews(2021)10.1016/j.blre.2021.100906

N/A

0DataRank · unranked

44 citations

David N. Fredricks, Joshua A. Hill, Amanda M. Casto

Differences in Vaginal Microbiota, Host Transcriptome, and Proteins in Women With Bacterial Vaginosis Are Associated With Metronidazole Treatment Response

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab266

N/A

0DataRank · unranked

22 citations

Tao Wang, Richard Hunte, Sujatha Srinivasan, Jessica McWalters, Gregory K. Tharp +15 more

Urethral Microbiota in Men: Association of Haemophilus influenzae and Mycoplasma penetrans With Nongonococcal Urethritis

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1123

N/A

0DataRank · unranked

64 citations

Laura C. Chambers, Kenneth Tapia, Noah G. Hoffman, Matthew M Munch, Jennifer L. L. Morgan +11 more

Associations Between Vaginal Bacteria and Bacterial Vaginosis Signs and Symptoms: A Comparative Study of Kenyan and American Women

Frontiers in Cellular and Infection Microbiology(2022)10.3389/fcimb.2022.801770

N/A

0DataRank · unranked

18 citations

Jennifer E. Balkus, Omu Anzala, Joshua Kimani, Noah G. Hoffman, Tina L. Fiedler +5 more