Suzanne Sindi

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “A field guide to cultivating computational biology”.

A field guide to cultivating computational biology

PLOS Biology(2021)10.1371/journal.pbio.3001419

N/A

1.3DataRank · unranked

22 citations

Casey S. Greene, Piero Carninci, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley +11 more

ACTIVA : realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders

Bioinformatics(2022)10.1093/bioinformatics/btac095

N/A

0.533DataRank · unranked

34 citations

Oscar A. Davalos, Lihong Zhao, Katrina K. Hoyer, Suzanne Sindi, A. Ali Heydari

A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI+] prion

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007647

N/A

0.345DataRank · unranked

9 citations

Laurent Pujo-Menjouet, Suzanne Sindi, Paul Lemarre

Modeling the distribution of enzymes on lipid vesicles: A novel framework for surface-mediated reactions in coagulation

Mathematical Biosciences(2024)10.1016/j.mbs.2024.109229

N/A

0.241DataRank · unranked

4 citations

Dougald M. Monroe, Suzanne Sindi, Karin Leiderman, Jamie Madrigal

Host tracheal and intestinal microbiomes inhibit Coccidioides growth in vitro

Microbiology Spectrum(2024)10.1128/spectrum.02978-23

N/A

0.176DataRank · unranked

2 citations

Lihong Zhao, Nicholas R. Hum, Maria Helena Pimentel, Anh L. Diep, Beheshta Amiri +5 more

Slack reactants: A state-space truncation framework to estimate quantitative behavior of the chemical master equation

The Journal of Chemical Physics(2020)10.1063/5.0013457

N/A

0.165DataRank · unranked

2 citations

Jason Dark, German Enciso, Suzanne Sindi, Jinsu Kim

A field guide to cultivating computational biology

arXiv (Cornell University)(2021)10.48550/arxiv.2104.11364

N/A

0.104DataRank · unranked

1 citations

Casey S. Greene, Piero Carnici, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley +9 more

N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.12.491682

N/A

0DataRank · unranked

3 citations

Oscar A. Davalos, Katrina K. Hoyer, Suzanne Sindi, A. Ali Heydari

Modeling and Global Sensitivity Analysis of Strategies to Mitigate Covid-19 Transmission on a Structured College Campus

medRxiv(2022)10.1101/2022.04.01.22273316

N/A

0DataRank · unranked

0 citations

Fabian Santiago, Erica M. Rutter, Shilpa Khatri, Suzanne Sindi, Lihong Zhao

Low normal factor V enhances thrombin generation in hemophilia A by a substrate competition mechanism with factor Xa

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.27.496845

N/A

0DataRank · unranked

0 citations

Christine Baird, Julie A. Peterson, Alan E. Mast, Marilyn J. Manco‐Johnson, Michael T. Stobb +5 more

A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010107

N/A

0DataRank · unranked

0 citations

Suzanne Sindi, Fabian Santiago

Deep learning in spatial transcriptomics: Learning from the next next-generation sequencing

Biophysics Reviews(2023)10.1063/5.0091135

N/A

0DataRank · unranked

31 citations

Suzanne Sindi, A. Ali Heydari

Inferring gene regulatory networks using transcriptional profiles as dynamical attractors

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010991

N/A

0DataRank · unranked

4 citations

Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne Sindi, Clarissa J. Nobile +3 more

Modeling and Global Sensitivity Analysis of Strategies to Mitigate Covid-19 Transmission on a Structured College Campus

Bulletin of Mathematical Biology(2023)10.1007/s11538-022-01107-2

N/A

0DataRank · unranked

2 citations

Fabian Santiago, Erica M. Rutter, Shilpa Khatri, Suzanne Sindi, Lihong Zhao

Boosting Single-Cell RNA Sequencing Analysis with Simple Neural Attention

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.29.542760

N/A

0DataRank · unranked

2 citations

A. Ali Heydari, Elana J. Fertig, Suzanne Sindi, Katrina K. Hoyer, Oscar A. Davalos

Host tracheal and intestinal microbiomes inhibit Coccidioides growth in vitro

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.23.563655

N/A

0DataRank · unranked

0 citations

Lihong Zhao, Nicholas R. Hum, Maria Helena Pimentel, Anh L. Diep, Beheshta Amiri +5 more

Mathematical modeling identifies clotting factor combinations that modify thrombin generation in normal and factor VIII-, IX-, or XI-deficient blood

Research and Practice in Thrombosis and Haemostasis(2024)10.1016/j.rpth.2024.102570

N/A

0DataRank · unranked

3 citations

Keith B. Neeves, Dougald M. Monroe, Suzanne Sindi, Karin Leiderman, Aaron L. Fogelson +1 more

Multiple aspects of amyloid dynamics in vivo integrate to establish prion variant dominance in yeast

Frontiers in Molecular Neuroscience(2024)10.3389/fnmol.2024.1439442

N/A

0DataRank · unranked

2 citations

Nicole Seah, Fabian Santiago, Suzanne Sindi, Tricia R. Serio, Jennifer Norton

Studying the Effects of Oral Contraceptives on Coagulation Using a Mathematical Modeling Approach

The IMA volumes in mathematics and its applications(2024)10.1007/978-3-031-58516-6_4

N/A

0DataRank · unranked

0 citations

Karin Leiderman, Anna C. Nelson, Suzanne Sindi, Melissa M. Stadt, Lingyun Xiong +2 more

Modeling the distribution of enzymes on lipid vesicles: A novel framework for surface-mediated reactions in coagulation

UNC Libraries(2024)10.17615/kbga-vs83

N/A

0DataRank · unranked

0 citations

Karin Leiderman, Jamie Madrigal, Dougald M. Monroe, Suzanne Sindi

A new look at TFPI inhibition of factor X activation

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012509

N/A

0DataRank · unranked

0 citations

Amandeep Kaur, Shannon Bride, Dougald M. Monroe, Karin Leiderman, Suzanne Sindi +1 more

A new look at TFPI inhibition of factor X activation.

UNC Libraries(2024)10.17615/c9kn-pj25

N/A

0DataRank · unranked

0 citations

Amandeep Kaur, Suzanne Sindi, Fabian Santiago, Dougald M. Monroe, Shannon Bride +1 more

[PSI]-CIC: A Deep-Learning Pipeline for the Annotation of Sectored Saccharomyces cerevisiae Colonies

Bulletin of Mathematical Biology(2024)10.1007/s11538-024-01379-w

N/A

0DataRank · unranked

0 citations

Wesley R. Naeimi, Tricia R. Serio, Suzanne Sindi, Jordan Collignon

Mathematical analysis of emicizumab: affinity-driven complex formation and lipid-surface reactions

Journal of Thrombosis and Haemostasis(2025)10.1016/j.jtha.2025.07.002

N/A

0DataRank · unranked

3 citations

Dougald M. Monroe, Suzanne Sindi, Karin Leiderman, Jamie Madrigal

Enhancing generalizability of model discovery across parameter space with multi-experiment equation learning (ME-EQL)

arXiv (Cornell University)(2025)10.48550/arxiv.2506.08916

N/A

0DataRank · unranked

0 citations

John T. Nardini, Kevin Flores, Erica M. Rutter, Suzanne Sindi, Alexandria Volkening +1 more

Quantifying the Biophysical Impact of Budding Cell Division on the Spatial Organization of Growing Yeast Colonies

Applied Sciences(2020)10.3390/app10175780

N/A

0DataRank · unranked

13 citations

Jordan Collignon, Suzanne Sindi, Mikahl Banwarth-Kuhn

Numerical Approaches to Division and Label Structured Population Models

Letters in Biomathematics(2020)10.30707/lib7.1.1647875326.042383

N/A

0DataRank · unranked

2 citations

Fabian Santiago, Kevin Flores, Suzanne Sindi

The Art and Science of Building a Computational Model to Understand Hemostasis

Seminars in Thrombosis and Hemostasis(2021)10.1055/s-0041-1722861

N/A

0DataRank · unranked

21 citations

Suzanne Sindi, Dougald M. Monroe, Aaron L. Fogelson, Keith B. Neeves, Karin Leiderman

AddTag, a two-step approach with supporting software package that facilitates CRISPR/Cas-mediated precision genome editing

G3 Genes Genomes Genetics(2021)10.1093/g3journal/jkab216

N/A

0DataRank · unranked

10 citations

Namkha Nguyen, Diana Ramos, Priyanka Bapat, Clarissa J. Nobile, Suzanne Sindi +2 more

ACTIVA : realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.28.428725

N/A

0DataRank · unranked

2 citations

Oscar A. Davalos, Lihong Zhao, Katrina K. Hoyer, Suzanne Sindi, A. Ali Heydari

Deep Learning in Spatial Transcriptomics: Learning From the Next Next-Generation Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.28.482392

N/A

0DataRank · unranked

18 citations

Suzanne Sindi, A. Ali Heydari