Chongle Pan

Also affiliated with University of Oklahoma

Environmental ScienceBiochemistry, Genetics and Molecular BiologyChemistryEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 25 papers. Top paper: “Omega: an Overlap-graphde novoAssembler for Metagenomics”.

Omega: an Overlap-graphde novoAssembler for Metagenomics

Bioinformatics(2014)10.1093/bioinformatics/btu395

N/A

4.1DataRank · unranked

96 citations

Tae-Hyuk Ahn, Brian Bushnell, Juanjuan Chai, Alex Copeland, Chongle Pan +1 more

Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane

mBio(2023)10.1128/mbio.03189-22

N/A

0.477DataRank · unranked

23 citations

Kristopher A. Hunt, Pieter Candry, Xuanyu Tao, Neil Q. Wofford, Jizhong Zhou +7 more

Nanopore Direct RNA Sequencing Reveals Virus-Induced Changes in the Transcriptional Landscape in Human Bronchial Epithelial Cells

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.26.600852

N/A

0.104DataRank · unranked

1 citations

J. Leland Booth, Wenxin Wu, N Kiger, Matthew Lettow, Averi Bates +4 more

Computer‐aided Veress needle guidance using endoscopic optical coherence tomography and convolutional neural networks

Journal of Biophotonics(2022)10.1002/jbio.202100347

N/A

0DataRank · unranked

15 citations

Justin C. Reynolds, Paul Calle, Avery D. Ladymon, Feng Yan, Yuyang Yan +7 more

MetaLP: An integrative linear programming method for protein inference in metaproteomics

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010603

N/A

0DataRank · unranked

6 citations

Hong‐Long Ji, Huan Wang, Bailu Zhang, Ryan Sterzenbach, Chongle Pan +2 more

LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations

IEEE Access(2022)10.1109/access.2022.3163257

N/A

0DataRank · unranked

9 citations

Chongle Pan, Adrien Badré

IDIA: An Integrative Signal Extractor for Data-Independent Acquisition Proteomics

2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2022)10.1109/bibm55620.2022.9994873

N/A

0DataRank · unranked

1 citations

Chongle Pan, Xuan Guo, Jiancheng Li

Persistent Biofluid Small-Molecule Alterations Induced by Trypanosoma cruzi Infection Are Not Restored by Parasite Elimination

ACS Infectious Diseases(2023)10.1021/acsinfecdis.3c00261

N/A

0DataRank · unranked

12 citations

Jarrod Roach, Rebecca Ulrich vonBargen, Yi Xiong, Shelley S. Kane, London Klechka +12 more

Enhancing epidural needle guidance using a polarization‐sensitive optical coherence tomography probe with convolutional neural networks

Journal of Biophotonics(2023)10.1002/jbio.202300330

N/A

0DataRank · unranked

11 citations

Yunlong Liu, Paul Calle, Xinwei Li, Ronghao Liu, Qinghao Zhang +7 more

Explainable multi-task learning improves the parallel estimation of polygenic risk scores for many diseases through shared genetic basis

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011211

N/A

0DataRank · unranked

10 citations

Chongle Pan, Adrien Badré

Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning

Research Square(2023)10.21203/rs.3.rs-3592809/v1

N/A

0DataRank · unranked

1 citations

Chen Wang, Haoyang Cui, Qinghao Zhang, Paul P. Calle, Yuyang Yan +8 more

Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins

Microbiome(2024)10.1186/s40168-024-01866-1

N/A

0DataRank · unranked

9 citations

Ryan Mueller, Shichao Feng, Xuan Guo, Chongle Pan, Yi Xiong

Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning

Communications Engineering(2024)10.1038/s44172-024-00254-9

N/A

0DataRank · unranked

6 citations

Haoyang Cui, Qinghao Zhang, Paul P. Calle, Yuyang Yan, Feng Yan +9 more

Metaproteomics-informed stoichiometric modeling reveals the responses of wetland microbial communities to oxygen and sulfate exposure

npj Biofilms and Microbiomes(2024)10.1038/s41522-024-00525-5

N/A

0DataRank · unranked

5 citations

Pieter Candry, Kristopher A. Hunt, Zachary Flinkstrom, Zheng Shi, Yunlong Liu +9 more

CloudProteoAnalyzer: scalable processing of big data from proteomics using cloud computing

Bioinformatics Advances(2024)10.1093/bioadv/vbae024

N/A

0DataRank · unranked

3 citations

Yi Xiong, Shichao Feng, Chongle Pan, Xuan Guo, Jiancheng Li

SEMQuant: Extending Sipros-Ensemble with Match-Between-Runs for Comprehensive Quantitative Metaproteomics

Lecture notes in computer science(2024)10.1007/978-981-97-5087-0_9

N/A

0DataRank · unranked

0 citations

Shichao Feng, Manushi Parajuli, Yi Xiong, Chongle Pan, Xuan Guo +1 more

Integration of nested cross-validation, automated hyperparameter optimization, high-performance computing to reduce and quantify the variance of test performance estimation of deep learning models

Computer Methods and Programs in Biomedicine(2025)10.1016/j.cmpb.2025.109063

N/A

0DataRank · unranked

11 citations

Averi Bates, Justin C. Reynolds, Yunlong Liu, Haoyang Cui, S. Ly +8 more

Higher-order microbial interactions revealed by comparative metabolic modeling of synthetic communities with varying species composition

ISME Communications(2025)10.1093/ismeco/ycaf142

N/A

0DataRank · unranked

3 citations

Kristopher A. Hunt, Britt Abrahamson, Zachary Flinkstrom, Xuanyu Tao, Ralph S. Tanner +9 more

Deep Learning for Autonomous Surgical Guidance Using 3‐Dimensional Images From Forward‐Viewing Endoscopic Optical Coherence Tomography

Journal of Biophotonics(2025)10.1002/jbio.202500181

N/A

0DataRank · unranked

2 citations

Adrien Badré, Parker Brandt, Chen Wang, Paul P. Calle, Justin Reynolds +10 more

Octascope: A Lightweight Pre-Trained Model for Optical Coherence Tomography

IEEE Access(2025)10.1109/access.2025.3595838

N/A

0DataRank · unranked

2 citations

Chen Wang, Paul P. Calle, Yunlong Liu, Qinghao Zhang, S. Ly +11 more

Enhancing peptide identification in metaproteomics through curriculum learning in deep learning

Nature Communications(2025)10.1038/s41467-025-63977-z

N/A

0DataRank · unranked

1 citations

Bailu Zhang, Huan Wang, Yi Xiong, Athena Tian, Xiaohui Yuan +3 more

Real-Time Viability Assessment of Ex Vivo Mouse Kidneys for Transplant Applications Using Dynamic Optical Coherence Tomography

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.30.673280

N/A

0DataRank · unranked

0 citations

Feng Yan, Trisha I. Valerio, Cui Yan, Qinghao Zhang, Ronghao Liu +22 more

Label-free viability assessment of ex vivo mouse kidneys for transplant applications using dynamic optical coherence tomography

Biomedical Optics Express(2025)10.1364/boe.579100

N/A

0DataRank · unranked

0 citations

Qinghao Zhang, Trisha I. Valerio, Feng Yan, Yan Cui, Ronghao Liu +24 more

Deep neural network improves the estimation of polygenic risk scores for breast cancer

Journal of Human Genetics(2020)10.1038/s10038-020-00832-7

N/A

0DataRank · unranked

74 citations

Li Zhang, Wellington Muchero, Justin C. Reynolds, Chongle Pan, Adrien Badré

Epidural anesthesia needle guidance by forward-view endoscopic optical coherence tomography and deep learning

Scientific Reports(2022)10.1038/s41598-022-12950-7

N/A

0DataRank · unranked

21 citations

Paul Calle, Justin C. Reynolds, Sam Ton, Feng Yan, Anthony M. Donaldson +8 more