Joseph Sugie

Also affiliated with University of California San Diego

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.292Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454220

Top 56%

0.292DataRank

Top 56%4 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Papers

Driven by 18 papers — median percentile 44. Top paper: “A novel vibriophage exhibits inhibitory activity against host protein synthesis machinery”.

A novel vibriophage exhibits inhibitory activity against host protein synthesis machinery

Scientific Reports(2020)10.1038/s41598-020-59396-3

N/A

0.574DataRank · unranked

45 citations

MacKennon E. Egan, Htut Htut Htoo, Kanika Khanna, Joseph Sugie, Jason F. Nideffer +6 more

Machine learning fromPseudomonas aeruginosatranscriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

Nucleic Acids Research(2022)10.1093/nar/gkac187

N/A

0.568DataRank · unranked

43 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media

GigaScience(2021)10.1093/gigascience/giaa156

N/A

0.548DataRank · unranked

15 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454220

Top 56%

0.292DataRank

Top 56%4 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.30.070904

N/A

0.219DataRank · unranked

3 citations

Saugat Poudel, Hannah Tsunemoto, Richard Szubin, Michael J. Meehan, Connor A. Olson +15 more

Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.19.079962

N/A

0.165DataRank · unranked

2 citations

Yara Seif, Hannah Tsunemoto, Saugat Poudel, Michael J. Meehan, Richard Szubin +15 more

Thienopyrimidine amide analogs target MmpL3 in Mycobacterium tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.26.661674

N/A

0.104DataRank · unranked

1 citations

Christopher L. Harding, Diana Quach, Joseph Sugie, Joe Pogliano, Tanya Parish +1 more

Metabolic differentiation and intercellular nurturing underpin bacterial endospore formation

Science Advances(2021)10.1126/sciadv.abd6385

N/A

0DataRank · unranked

37 citations

Javier López‐Garrido, Joseph Sugie, Roland B. Liu, Kit Pogliano, Eammon P. Riley

Viral speciation through subcellular genetic isolation and virogenesis incompatibility

Nature Communications(2021)10.1038/s41467-020-20575-5

N/A

0DataRank · unranked

30 citations

Erica A. Birkholz, Amy Prichard, MacKennon E. Egan, Avani Mylvara, Poochit Nonejuie +5 more

Selective transport of fluorescent proteins into the phage nucleus

PLoS ONE(2021)10.1371/journal.pone.0251429

N/A

0DataRank · unranked

28 citations

Joseph Sugie, Kanika Khanna, MacKennon E. Egan, Erica A. Birkholz, Jina Lee +4 more

Asymmetric localization of the cell division machinery during Bacillus subtilis sporulation

eLife(2021)10.7554/elife.62204

N/A

0DataRank · unranked

58 citations

Javier López‐Garrido, Joseph Sugie, Kit Pogliano, Elizabeth Villa, Kanika Khanna

Bacterial Cytological Profiling Identifies Rhodanine-Containing PAINS Analogs as Specific Inhibitors of Escherichia coli Thymidylate Kinase In Vivo

Journal of Bacteriology(2021)10.1128/jb.00105-21

N/A

0DataRank · unranked

14 citations

Jason F. Nideffer, Joseph Sugie, Eray Enüstün, Adam B. Shapiro, Hannah Tsunemoto +4 more

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.079640

N/A

0DataRank · unranked

0 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

Asymmetric localization of the cell division machinery during Bacillus subtilis sporulation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.22.216184

N/A

0DataRank · unranked

4 citations

Javier López‐Garrido, Joseph Sugie, Kit Pogliano, Elizabeth Villa, Kanika Khanna

Bacterial cytological profiling reveals interactions between jumbo phage φKZ infection and cell wall active antibiotics in Pseudomonas aeruginosa

PLoS ONE(2023)10.1371/journal.pone.0280070

N/A

0DataRank · unranked

12 citations

Joseph Sugie, Eray Enüstün, Kit Pogliano, Joe Pogliano, Hannah Tsunemoto

Thienopyrimidine amide analogs target MmpL3 in Mycobacterium tuberculosis

Antimicrobial Agents and Chemotherapy(2025)10.1128/aac.00980-25

N/A

0DataRank · unranked

1 citations

Christopher L. Harding, Diana Quach, Joseph Sugie, Joe Pogliano, Tanya Parish +1 more

Developmentally regulated proteolysis by MdfA and ClpCP mediates metabolic differentiation during Bacillus subtilis sporulation

Genes & Development(2025)10.1101/gad.352535.124

N/A

0DataRank · unranked

4 citations

Jelani A. Lyda, Octavio Reyes-Matte, Joseph Sugie, Iqra R. Kasu, Eray Enüstün +7 more

Selective transport of fluorescent proteins into the phage nucleus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.25.398438

N/A

0DataRank · unranked

7 citations

Joseph Sugie, Kanika Khanna, MacKennon E. Egan, Erica A. Birkholz, Jina Lee +4 more

Joseph Sugie

Indexed papers

Top data-sharing exemplar

Papers