Karthik Hullahalli

ORCID: 0000-0003-3064-2090

Also affiliated with Howard Hughes Medical Institute, Harvard University, Loyola University Chicago

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 31 papers. Top paper: “Refined Quantification of Infection Bottlenecks and Pathogen Dissemination with STAMPR”.

Refined Quantification of Infection Bottlenecks and Pathogen Dissemination with STAMPR

mSystems(2021)10.1128/msystems.00887-21

N/A

0.574DataRank · unranked

45 citations

Justin R. Pritchard, Matthew K. Waldor, Karthik Hullahalli

Genetic and immune determinants of E. coli liver abscess formation

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2310053120

N/A

0.457DataRank · unranked

20 citations

Katherine G. Dailey, Yuko Hasegawa, Encarnación Torres, Masataka Suzuki, Hailong Zhang +4 more

TNF signaling maintains local restriction of bacterial founder populations in intestinal and systemic sites during oral Yersinia infection

mBio(2025)10.1128/mbio.01779-25

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0.296DataRank · unranked

6 citations

Katherine G. Dailey, Karthik Hullahalli, Daniel Sorobetea, Rina Matsuda, Jaydeen Sewell +13 more

Reverse transcriptase inhibitors diminish systemic proinflammatory responses to bacterial pathogens

mBio(2025)10.1128/mbio.03412-24

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0.222DataRank · unranked

2 citations

Katherine G. Dailey, Ryan Acbay, Masataka Suzuki, G. Balázs, Matthew K. Waldor +1 more

Quantitative dose-response analysis untangles host bottlenecks to enteric infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.11.511778

N/A

0.208DataRank · unranked

3 citations

Karthik Hullahalli, Jerrold R. Turner, Matthew K. Waldor, Ian W. Campbell

Pathogen clonal expansion underlies multiorgan dissemination and organ-specific outcomes during systemic infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.17.444473

N/A

0.165DataRank · unranked

2 citations

Matthew K. Waldor, Karthik Hullahalli

Genetic and immune determinants of E. coli liver abscess formation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.11.543319

N/A

0.165DataRank · unranked

2 citations

Katherine G. Dailey, Yuko Hasegawa, Masataka Suzuki, Hailong Zhang, David W. Threadgill +2 more

Targeted IS-element sequencing uncovers transposition dynamics during selective pressure in enterococci

PLoS Pathogens(2023)10.1371/journal.ppat.1011424

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0DataRank · unranked

25 citations

Shannon Ely, Madison E. Stellfox, Karthik Hullahalli, Phat Luong, Kelli L. Palmer +3 more

Innate immune responses yield tissue-specific bottlenecks that scale with pathogen dose

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2309151120

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0DataRank · unranked

19 citations

Katherine G. Dailey, Matthew K. Waldor, Karthik Hullahalli

Innate immune responses yield tissue-specific bottlenecks that scale with pathogen dose

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.09.543079

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0DataRank · unranked

2 citations

Katherine G. Dailey, Matthew K. Waldor, Karthik Hullahalli

Temporal and spatial dynamics of Listeria monocytogenes central nervous system infection in mice

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2320311121

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0DataRank · unranked

18 citations

Karthik Hullahalli, Katherine G. Dailey, Leslie Güereca, Chen‐Yu Zhang, Matthew K. Waldor +2 more

pLxIS-containing domains are biochemically flexible regulators of interferons and metabolism

Molecular Cell(2024)10.1016/j.molcel.2024.05.030

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0DataRank · unranked

8 citations

Neha Chaudhary, Yun Chen Tien, Magdalena Rogozinska, Shakchhi Joshi, Cong-Hui Yao +7 more

Reverse transcriptase inhibitors prevent liver abscess formation during Escherichia coli bloodstream infection

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2319162121

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0DataRank · unranked

4 citations

Katherine G. Dailey, Yuko Hasegawa, Welkin E. Johnson, Matthew K. Waldor, Karthik Hullahalli

Quantification of Salmonella enterica serovar Typhimurium population dynamics in murine infection using a highly diverse barcoded library

eLife(2024)10.7554/elife.101388

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0DataRank · unranked

7 citations

Ian W. Campbell, Karthik Hullahalli, Akina Osaki, Matthew K. Waldor, Julia A. Hotinger

Inducible transposon mutagenesis for genome-scale forward genetics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.21.595064

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0DataRank · unranked

1 citations

Ian W. Campbell, Emily Sullivan, Julia A. Hotinger, Karthik Hullahalli, Matthew K. Waldor +1 more

Quantification of Salmonella enterica serovar Typhimurium Population Dynamics in Murine Infection Using a Highly Diverse Barcoded Library

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.28.601246

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0DataRank · unranked

1 citations

Ian W. Campbell, Karthik Hullahalli, Akina Osaki, Matthew K. Waldor, Julia A. Hotinger

Quantification of Salmonella enterica serovar Typhimurium Population Dynamics in Murine Infection Using a Highly Diverse Barcoded Library

eLife(2024)10.7554/elife.101388.1

N/A

0DataRank · unranked

0 citations

Ian W. Campbell, Karthik Hullahalli, Akina Osaki, Matthew K. Waldor, Julia A. Hotinger

Inducible transposon mutagenesis identifies bacterial fitness determinants during infection in mice

Nature Microbiology(2025)10.1038/s41564-025-01975-z

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0DataRank · unranked

15 citations

Ian W. Campbell, Emily Sullivan, Julia A. Hotinger, Karthik Hullahalli, Mehek Garg +2 more

Quantification of Salmonella enterica serovar Typhimurium Population Dynamics in Murine Infection Using a Highly Diverse Barcoded Library

eLife(2025)10.7554/elife.101388.2

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0DataRank · unranked

2 citations

Ian W. Campbell, Karthik Hullahalli, Akina Osaki, Matthew K. Waldor, Julia A. Hotinger

IscR-mediated sensing of iron-sulfur cluster demand coordinates virulence gene expression in Yersinia pseudotuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.16.682990

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0DataRank · unranked

1 citations

G. Balázs, Karthik Hullahalli, Diana Fernandez Pacheco, Caia Lomeli, Katherine G. Dailey +7 more

Reviewer #2 (Public review): Quantification of Salmonella enterica serovar Typhimurium Population Dynamics in Murine Infection Using a Highly Diverse Barcoded Library

(2025)10.7554/elife.101388.2.sa1

N/A

0DataRank · unranked

0 citations

Ian W Campbell, Karthik Hullahalli, Akina Osaki, Matthew K Waldor, Julia A Hotinger

Author response: Quantification of Salmonella enterica serovar Typhimurium Population Dynamics in Murine Infection Using a Highly Diverse Barcoded Library

(2025)10.7554/elife.101388.2.sa0

N/A

0DataRank · unranked

0 citations

Ian W. Campbell, Karthik Hullahalli, Akina Osaki, Matthew K. Waldor, Julia A. Hotinger

Reviewer #1 (Public review): Quantification of Salmonella enterica serovar Typhimurium Population Dynamics in Murine Infection Using a Highly Diverse Barcoded Library

(2025)10.7554/elife.101388.2.sa2

N/A

0DataRank · unranked

0 citations

Ian W Campbell, Karthik Hullahalli, Akina Osaki, Matthew K Waldor, Julia A Hotinger

Pathogen clonal expansion underlies multiorgan dissemination and organ-specific outcomes during murine systemic infection

eLife(2021)10.7554/elife.70910

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0DataRank · unranked

59 citations

Matthew K. Waldor, Karthik Hullahalli

Accurate interpretation of within-host dissemination using barcoded bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.11.687827

N/A

0DataRank · unranked

0 citations

Ting Zhang, Caitlyn L. Holmes, Karthik Hullahalli, Rachel T. Giorgio

Undecaprenyl phosphate translocases confer conditional microbial fitness

Nature(2022)10.1038/s41586-022-05569-1

N/A

0DataRank · unranked

72 citations

Veerasak Srisuknimit, Emilio Cendejas‐Bueno, Franz G. Zingl, Karthik Hullahalli, Felipe Cava +2 more

Nontoxigenic Vibrio cholerae Challenge Strains for Evaluating Vaccine Efficacy and Inferring Mechanisms of Protection

mBio(2022)10.1128/mbio.00539-22

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0DataRank · unranked

29 citations

Karthik Hullahalli, Daniel H. F. Rubin, Deborah R. Leitner, Roma Chilengi, David A. Sack +2 more

Variation in supplemental carbon dioxide requirements defines lineage-specific antibiotic resistance acquisition in Neisseria gonorrhoeae

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.24.481660

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0DataRank · unranked

3 citations

C. Kevin, Kathleen A. Westervelt, Karthik Hullahalli, Matthew K. Waldor, Yonatan H. Grad +1 more

Targeted IS-element sequencing uncovers transposition dynamics during selective pressure in enterococci

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.24.505136

N/A

0DataRank · unranked

1 citations

Shannon Ely, Madison E. Stellfox, Karthik Hullahalli, Phat Luong, Kelli L. Palmer +3 more

Quantitative dose-response analysis untangles host bottlenecks to enteric infection

Nature Communications(2023)10.1038/s41467-023-36162-3

N/A

0DataRank · unranked

43 citations

Karthik Hullahalli, Jerrold R. Turner, Matthew K. Waldor, Ian W. Campbell

CanB is a metabolic mediator of antibiotic resistance in Neisseria gonorrhoeae

Nature Microbiology(2023)10.1038/s41564-022-01282-x

N/A

0DataRank · unranked

33 citations

C. Kevin, Kathleen A. Westervelt, Karthik Hullahalli, Matthew K. Waldor, Yonatan H. Grad +1 more