Ying Hefner

Also affiliated with La Jolla Bioengineering Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions”.

The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions

mSystems(2024)10.1128/msystems.00305-24

N/A

0.484DataRank · unranked

20 citations

Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C. Zielinski +2 more

Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077271

N/A

0DataRank · unranked

7 citations

Nick Dillon, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin +4 more

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

Communications Biology(2021)10.1038/s42003-021-02339-z

N/A

0DataRank · unranked

39 citations

Yara Seif, George Sakoulas, Connor A. Olson, Ying Hefner, Amitesh Anand +6 more

Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli

Communications Biology(2021)10.1038/s42003-021-02516-0

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0DataRank · unranked

25 citations

Ye Gao, Anand V. Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A. Rodionov +3 more

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility

mSphere(2021)10.1128/msphere.00443-21

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0DataRank · unranked

21 citations

Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu +5 more

A novel transcription factor PunR and Nac are involved in purine and purine nucleoside transporter punC regulation in E. coli

Research Square(2021)10.21203/rs.3.rs-146218/v1

N/A

0DataRank · unranked

3 citations

Ye Gao, Anand V. Sastry, Ying Hefner, Reo Yoo, Dmitry A. Rodionov +3 more

Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity

Nature Communications(2022)10.1038/s41467-022-30877-5

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0DataRank · unranked

31 citations

Arjun Patel, Ke Chen, Connor A. Olson, Patrick V. Phaneuf, Cameron Lamoureux +5 more

A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

Scientific Reports(2022)10.1038/s41598-022-11134-7

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0DataRank · unranked

22 citations

Ye Gao, Jonathan M. Monk, Ying Hefner, Nicholas Wong, Richard Szubin +6 more

Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487013

N/A

0DataRank · unranked

1 citations

Arjun Patel, Ke Chen, Connor A. Olson, Patrick V. Phaneuf, Cameron Lamoureux +5 more

Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species

Nature Communications(2023)10.1038/s41467-023-43549-9

N/A

0DataRank · unranked

20 citations

Jonathan M. Monk, Richard Szubin, Ying Hefner, Bernhard Ø. Palsson, Jason C. Hyun

Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance

Cell Reports(2023)10.1016/j.celrep.2023.113105

N/A

0DataRank · unranked

24 citations

Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin +11 more

The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions

Research Square(2023)10.21203/rs.3.rs-2729651/v1

N/A

0DataRank · unranked

9 citations

Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C. Zielinski +2 more

Proteome allocation is linked to transcriptional regulation through a modularized transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.20.529291

N/A

0DataRank · unranked

4 citations

Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V. Sastry, Svetlana Maurya +4 more

Global pathogenomic analysis identifies known and novel genetic antimicrobial resistance determinants in twelve species

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.26.542542

N/A

0DataRank · unranked

1 citations

Jonathan M. Monk, Richard Szubin, Ying Hefner, Bernhard Ø. Palsson, Jason C. Hyun

Proteome allocation is linked to transcriptional regulation through a modularized transcriptome

Nature Communications(2024)10.1038/s41467-024-49231-y

N/A

0DataRank · unranked

16 citations

Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V. Sastry, Svetlana Maurya +4 more

Metabolic and genetic basis for auxotrophies in Gram-negative species

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1910499117

N/A

0DataRank · unranked

65 citations

Kumari Sonal Choudhary, Ying Hefner, Amitesh Anand, Laurence Yang, Bernhard Ø. Palsson +1 more

PMkbase (version 1.0): an interactive web-based tool for tracking bacterial metabolic traits using phenotype microarrays made interoperable with sequence information and visualizing/processing PM data

Microbiology Spectrum(2025)10.1128/spectrum.03279-24

N/A

0DataRank · unranked

3 citations

Ying Hefner, Richard Szubin, Jonathan M. Monk, David T. Pride, Bernhard Ø. Palsson +1 more