James C. Costello

Also affiliated with University of Colorado Anschutz Medical Campus, University of Colorado Denver

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 51 papers. Top paper: “Transcriptomes of the B and T Lineages Compared by Multiplatform Microarray Profiling”.

Transcriptomes of the B and T Lineages Compared by Multiplatform Microarray Profiling

The Journal of Immunology(2011)10.4049/jimmunol.1002695

N/A

4.5DataRank · unranked

106 citations

Scott Davis, Diane Mathis, the Immunological Genome Project Consortium, Yan Zhou, Natasha Asinovski +48 more

ImmGen at 15

Nature Immunology(2020)10.1038/s41590-020-0687-4

N/A

2.8DataRank · unranked

81 citations

Stephanie Vargas Aguilar, Oscar A. Aguilar, Rhys S. Allan, El Ad David Amir, Véronique Angeli +94 more

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100323

N/A

2.3DataRank · unranked

110 citations

Bálint Pataki, Roberto Romero, Marina Sirota, Yuanfang Guan, Rintu Kutum +13 more

Identification of a Small-Molecule Inhibitor That Disrupts the SIX1/EYA2 Complex, EMT, and Metastasis

Cancer Research(2020)10.1158/0008-5472.can-20-0435

N/A

1.4DataRank · unranked

49 citations

Melanie A. Blevins, Jessica Y. Hsu, Deguang Kong, Matthew D. Galbraith, Andrew Goodspeed +20 more

Wisdom of crowds for robust gene network inference

Nature Methods(2012)10.1038/nmeth.2016

N/A

1.1DataRank · unranked

1765 citations

Daniel Marbach, James C. Costello, Robert Küffner, Nicole M Vega, Robert J. Prill +5 more

Monocytic Subclones Confer Resistance to Venetoclax-Based Therapy in Patients with Acute Myeloid Leukemia

Cancer Discovery(2020)10.1158/2159-8290.cd-19-0710

N/A

0.951DataRank · unranked

564 citations

Daniel A. Pollyea, Annika Gustafson, Brett M. Stevens, Mohammad Minhajuddin, Rui Fu +27 more

Androgen Receptor Signaling in Prostate Cancer Genomic Subtypes

Cancers(2021)10.3390/cancers13133272

N/A

0.883DataRank · unranked

19 citations

Gabriel A. Yette, Teemu D. Laajala, Wayne D. Tilley, James C. Costello, Scott D. Cramer +1 more

Mediator of DNA Damage Checkpoint 1 (MDC1) Is a Novel Estrogen Receptor Coregulator in Invasive Lobular Carcinoma of the Breast

Molecular Cancer Research(2021)10.1158/1541-7786.mcr-21-0025

N/A

0.709DataRank · unranked

17 citations

Evelyn K. Bordeaux, Sanjana Mehrotra, Sarah E. Ferrara, Andrew Goodspeed, James C. Costello +2 more

SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses

Genomics, Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.09.011

N/A

0.705DataRank · unranked

9 citations

Dallas L. Mould, Jake Crawford, Dongbo Hu, Rani K. Powers, Georgia Doing +4 more

Transcriptome Analysis Identifies Regulators of Hematopoietic Stem and Progenitor Cells

Stem Cell Reports(2013)10.1016/j.stemcr.2013.07.004

N/A

0.700DataRank · unranked

105 citations

Brian S. Garrison, Tata Nageswara Rao, Tal Shay, Jeff Ericson, Francis Kim +7 more

Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

Cancer Research(2021)10.1158/0008-5472.can-20-3892

N/A

0.637DataRank · unranked

69 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

The Capacity of the Ovarian Cancer Tumor Microenvironment to Integrate Inflammation Signaling Conveys a Shorter Disease-free Interval

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-1762

N/A

0.637DataRank · unranked

69 citations

Matthew J. Sikora, Jill E. Slansky, Angela Minic, Jennifer K. Richer, Marisa R. Moroney +10 more

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101350

N/A

0.546DataRank · unranked

37 citations

Tomiko Oskotsky, Alice Tang, Alennie Roldan, Verena Chung, Connie Ha +56 more

Mesenchymal and MAPK Expression Signatures Associate with Telomerase Promoter Mutations in Multiple Cancers

Molecular Cancer Research(2020)10.1158/1541-7786.mcr-19-1244

N/A

0.533DataRank · unranked

34 citations

Grace N. Hibshman, Kevin Hu, Sarah E. Ferrara, James C. Costello, William Kim +4 more

A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis

JAMA Network Open(2022)10.1001/jamanetworkopen.2022.27423

N/A

0.489DataRank · unranked

25 citations

Thanh Minh Nguyen, Robert J. Allaway, Jelai Wang, Verena Chung, Thomas Yu +43 more

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.130971

N/A

0.385DataRank · unranked

12 citations

Bálint Pataki, Roberto Romero, Marina Sirota, Yuanfang Guan, Rintu Kutum +13 more

Biologically Informed Neural Networks Predict Drug Responses

Cancer Cell(2020)10.1016/j.ccell.2020.10.014

N/A

0.373DataRank · unranked

11 citations

James C. Costello, Casey S. Greene

A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis

medRxiv(2021)10.1101/2021.10.25.21265495

N/A

0.325DataRank · unranked

6 citations

Thanh Nguyen, Robert J. Allaway, Jelai Wang, Verena Chung, Thomas Yu +17 more

A Pathway-Level Information ExtractoR (PLIER) framework to gain mechanistic insights into obesity in Down syndrome

Biocomputing 2025(2024)10.1142/9789819807024_0030

N/A

0.208DataRank · unranked

3 citations

Yuehua Zhu, Lucas A. Gillenwater, Marc Subirana-Granés, Haoyu Zhang, Negar Janani +5 more

eIF3d and eIF3e mediate selective translational control of hypoxia that can be inhibited by small molecules

Cell Reports(2025)10.1016/j.celrep.2025.116643

N/A

0.208DataRank · unranked

3 citations

Kate Matlin, Christopher P Alderman, Amber Baldwin, Natasha Shrivastava, Goksu Sarioglu +16 more

A phase II, randomized, double-blind study of the use of rucaparib vs. placebo maintenance therapy in metastatic and recurrent endometrial cancer

Gynecologic Oncology(2025)10.1016/j.ygyno.2025.07.008

N/A

0.208DataRank · unranked

3 citations

Ashley Haggerty, Stefan M. Gysler, Sarah E. Taylor, Kian Behbakht, Jill Alldredge +10 more

A Roadmap for the Future of Systems Biology in Cancer Research

Cancer Research(2025)10.1158/0008-5472.can-25-0700

N/A

0.165DataRank · unranked

2 citations

Carlos F. Lopez, Andréi S. Rodin, Russell C. Rockne, Thomas E. Yankeelov, Herbert M Sauro +23 more

Mediator of DNA damage checkpoint 1 (MDC1) is a novel estrogen receptor co-regulator in invasive lobular carcinoma of the breast

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423142

N/A

0.116DataRank · unranked

1 citations

Joseph L. Sottnik, Sanjana Mehrotra, Sarah E. Ferrara, Andrew Goodspeed, James C. Costello +2 more

Generative neural networks separate common and specific transcriptional responses

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.24.445440

N/A

0.104DataRank · unranked

1 citations

Dallas L. Mould, Jake Crawford, Dongbo Hu, Rani K. Powers, Georgia Doing +4 more

Figure S5 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

Figshare(2023)10.1158/0008-5472.24895390.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Figure S2 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

Figshare(2023)10.1158/0008-5472.24895399.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

CPT1A Over-Expression Increases Reactive Oxygen Species in the Mitochondria and Promotes Antioxidant Defenses in Prostate Cancer

Cancers(2020)10.3390/cancers12113431

N/A

0DataRank · unranked

56 citations

Jihye Kim, Angelo D’Alessandro, Emily Monk, Kimberley D. Bruce, Hanan Elajaili +5 more

Figure S5 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895390

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Figure S3 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

Figshare(2023)10.1158/0008-5472.24895396.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Figure S3 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895396

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

IL13Rα2 Promotes Proliferation and Outgrowth of Breast Cancer Brain Metastases

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-0361

N/A

0DataRank · unranked

39 citations

María J. Contreras‐Zárate, Vesna Tešić, Karen L.F. Alvarez-Eraso, Gina Kwak, Zachary Littrell +7 more

MAP3K7 Loss Drives Enhanced Androgen Signaling and Independently Confers Risk of Recurrence in Prostate Cancer with Joint Loss of CHD1

Molecular Cancer Research(2021)10.1158/1541-7786.mcr-20-0913

N/A

0DataRank · unranked

21 citations

Leah C. Rider, Lindsey Ulkus Rodrigues, Lina Romero, Anis Karimpour‐Fard, Cera Nieto +10 more

Figure S1 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895402.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Figure S2 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895399

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

SIX1 Reprograms Myogenic Transcription Factors to Maintain the Rhabdomyosarcoma undifferentiated state

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.25.439216

N/A

0DataRank · unranked

3 citations

Etienne Danis, Stephanie Nance, Jenean O’Brien, Veronica M. Wessells, Andrew Goodspeed +9 more

SIX1 reprograms myogenic transcription factors to maintain the rhabdomyosarcoma undifferentiated state

Cell Reports(2022)10.1016/j.celrep.2022.110323

N/A

0DataRank · unranked

42 citations

Etienne Danis, Stephanie Nance, Jenean O’Brien, Annika Gustafson, Veronica M. Wessells +10 more

Supplementary Methods from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

Figshare(2023)10.1158/0008-5472.24895381.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

High-Content Drug Discovery Targeting Molecular Bladder Cancer Subtypes

International Journal of Molecular Sciences(2022)10.3390/ijms231810605

N/A

0DataRank · unranked

6 citations

Qiong Zhou, Joshua M. Abbott, Florus C. de Jong, Hector Esquer, James C. Costello +3 more

Supplementary Tables from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895378

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

SIX1 and EWS/FLI1 co-regulate an anti-metastatic gene network in Ewing Sarcoma

Nature Communications(2023)10.1038/s41467-023-39945-w

N/A

0DataRank · unranked

12 citations

Kaiah M. Fields, Etienne Danis, Jessica Y. Hsu, Deepika Neelakantan, Melanie Y. Vincent +8 more

Down syndrome is associated with altered frequency and functioning of tracheal multiciliated cells, and response to influenza virus infection

iScience(2023)10.1016/j.isci.2023.107361

N/A

0DataRank · unranked

3 citations

Brian F. Niemeyer, Rocío J. Jiménez-Valdés, Alexander J. Kaiser, Joaquı́n M. Espinosa, Kelly D. Sullivan +7 more

ProstaMine: a bioinformatics tool for identifying subtype-specific co-alterations associated with aggressiveness in prostate cancer

Frontiers in Pharmacology(2024)10.3389/fphar.2024.1360352

N/A

0DataRank · unranked

1 citations

Varsha Sreekanth, Teemu D. Laajala, Scott D. Cramer, James C. Costello, Michael V. Orman

Figure S4 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

Figshare(2023)10.1158/0008-5472.24895393.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

eIF3d and eIF3e mediate selective translational control of hypoxia that can be inhibited by novel small molecules

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.29.656739

N/A

0DataRank · unranked

0 citations

Kate Matlin, Christopher P Alderman, Amber Baldwin, Natasha Shrivastava, Somnath Dutta +14 more

Figure S4 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895393

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Figure S6 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895387

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Figure S1 from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895402

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Data from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.c.6994537.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Supplementary Legends from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

(2023)10.1158/0008-5472.24895384

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more

Inhibition of the CCL2 receptor, CCR2, enhances tumor response to immune checkpoint therapy

Communications Biology(2020)10.1038/s42003-020-01441-y

N/A

0DataRank · unranked

178 citations

Hany Abdel-Hafiz, Robert T. Jones, Annie Jean, Katelyn J. Hoff, Jason E. Duex +8 more

Supplementary Tables from Induction of ADAM10 by Radiation Therapy Drives Fibrosis, Resistance, and Epithelial-to-Mesenchyal Transition in Pancreatic Cancer

Figshare(2023)10.1158/0008-5472.24895378.v1

N/A

0DataRank · unranked

0 citations

Miles Piper, Andrew Goodspeed, Shiv Bhuvane, Jason S. Williams, Shilpa Bhatia +32 more