Panayiotis V. Benos

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.827Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Topographic heterogeneity of lung microbiota in end-stage idiopathic pulmonary fibrosis: the Microbiome in Lung Explants-2 (MiLEs-2) study

Thorax(2020)10.1136/thoraxjnl-2020-214770

Top 24%

0.827DataRank

Top 24%23 citations

Haopu Yang, John Sembrat, Libing Yang, Spencer Winters, Rachel Nettles +13 more

Papers

Driven by 65 papers — median percentile 76. Top paper: “Transcriptomics of bronchoalveolar lavage cells identifies new molecular endotypes of sarcoidosis”.

Transcriptomics of bronchoalveolar lavage cells identifies new molecular endotypes of sarcoidosis

European Respiratory Journal(2021)10.1183/13993003.02950-2020

N/A

1.2DataRank · unranked

58 citations

Xiting Yan, Kevin F. Gibson, Mridu Gulati, Jonas C. Schupp, Giuseppe DeIuliis +24 more

Integrated BATF transcriptional network regulates suppressive intratumoral regulatory T cells

Science Immunology(2023)10.1126/sciimmunol.adf6717

N/A

0.977DataRank · unranked

34 citations

Anthony R. Cillo, Carly Cardello, Daniel Y. Yuan, Sheryl Kunning, Jian Cui +12 more

Foxm1 regulates cardiomyocyte proliferation in adult zebrafish after cardiac injury

Development(2023)10.1242/dev.201163

N/A

0.966DataRank · unranked

35 citations

Maria A Missinato, Lucas Santana‐Santos, Guang Li, Panayiotis V. Benos, Michael Tsang +1 more

Topographic heterogeneity of lung microbiota in end-stage idiopathic pulmonary fibrosis: the Microbiome in Lung Explants-2 (MiLEs-2) study

Thorax(2020)10.1136/thoraxjnl-2020-214770

Top 24%

0.827DataRank

Top 24%23 citations

Haopu Yang, John Sembrat, Libing Yang, Spencer Winters, Rachel Nettles +13 more

Early Evidence of Chronic Obstructive Pulmonary Disease Obscured by Race-Specific Prediction Equations

American Journal of Respiratory and Critical Care Medicine(2023)10.1164/rccm.202303-0444oc

N/A

0.533DataRank · unranked

34 citations

Melissa Lowe, Barry J. Make, Jeffrey L. Curtis, Quan Chen, James Crooks +33 more

People critically ill with COVID-19 exhibit peripheral immune profiles predictive of mortality and reflective of SARS-CoV-2 lung viral burden

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100476

N/A

0.457DataRank · unranked

20 citations

Ashwin Somasundaram, Feng Shan, Carly Cardello, Creg J. Workman, Georgios D. Kitsios +24 more

Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad211

N/A

0.434DataRank · unranked

17 citations

Radha Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman +14 more

Lipidomic Signatures Align with Inflammatory Patterns and Outcomes in Critical Illness

Research Square(2021)10.21203/rs.3.rs-106579/v1

N/A

0.416DataRank · unranked

15 citations

Anthony R. Cyr, Danielle S. Gruen, Tyler Lovelace, Panayiotis V. Benos, Tianmeng Chen +17 more

Causal discovery in high-dimensional, multicollinear datasets

Frontiers in Epidemiology(2022)10.3389/fepid.2022.899655

N/A

0.385DataRank · unranked

12 citations

Daniel Y. Yuan, Tyler Lovelace, Mengying Hu, Panayiotis V. Benos, Minxue Jia

Alveolar epithelial cell plasticity and injury memory in human pulmonary fibrosis

10.1101/2025.06.10.658504

N/A

0.373DataRank · unranked

11 citations

Jonas C. Schupp, Agshin Balayev, Johad Khoury, Aurélien Justet, Fadi Nikola +15 more

Altered AP-1, RUNX and EGR chromatin dynamics drive fibrotic lung disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.23.619858

N/A

0.312DataRank · unranked

7 citations

Minxue Jia, Peter Gerges, Jing‐Yu Fan, Tracy Tabib, Rithika Behara +7 more

Defining trophoblast injury patterns in the transcriptomes of dysfunctional placentas

Placenta(2023)10.1016/j.placenta.2023.10.010

N/A

0.292DataRank · unranked

6 citations

Tyler Lovelace, Tianjiao Chu, Zhishen Cao, Elena Sadovsky, Jean‐François Mouillet +4 more

HALO: hierarchical causal modeling for single cell multi-omics data

Nature Communications(2025)10.1038/s41467-025-63921-1

N/A

0.269DataRank · unranked

5 citations

Minxue Jia, Marissa Di, Eleanor Valenzi, Xiaoyu Cai, Robert Lafyatis +3 more

A Pipeline for Integrated Theory and Data-Driven Modeling of Biomedical Data

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2020)10.1109/tcbb.2020.3019237

N/A

0.241DataRank · unranked

4 citations

Xiaoyu Ge, Arun Balajiee, Daniel J. Shirer, Isha Das, Panayiotis V. Benos +2 more

Prognostic Insights from Longitudinal Multicompartment Study of Host-Microbiota Interactions in Critically Ill Patients.

Research Square(2023)10.21203/rs.3.rs-3338762/v1

N/A

0.208DataRank · unranked

3 citations

Khaled Sayed, Adam Fitch, Haopu Yang, Noel Britton, Faraaz Shah +18 more

Identification of factors directly linked to incident chronic obstructive pulmonary disease: A causal graph modeling study

PLoS Medicine(2024)10.1371/journal.pmed.1004444

N/A

0.138DataRank · unranked

1 citations

Chad Karoleski, Edwin K. Silverman, Frank C. Sciurba, Dawn L. DeMeo, Panayiotis V. Benos +1 more

Early events marking lung fibroblast transition to profibrotic state in idiopathic pulmonary fibrosis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.29.501956

N/A

0.104DataRank · unranked

1 citations

Lorena Rosas, Maria G. Kapetanaki, Tracy Tabib, John Sebrat, Tamara Cruz +6 more

The Physiology Of the WEight Reduced State (POWERS) study: overview and study design

International Journal of Obesity(2025)10.1038/s41366-025-01932-0

N/A

0.104DataRank · unranked

1 citations

Dympna Gallagher, Susan B. Roberts, Maren R. Laughlin, Sai Krupa Das, Kathryn Whyte +76 more

The Physiology Of the WEight Reduced State (POWERS) study: assessing energy balance

International Journal of Obesity(2025)10.1038/s41366-025-01935-x

N/A

0.104DataRank · unranked

1 citations

Kelly C. Allison, Maren R. Laughlin, Kathryn Whyte, John M. Jakicic, Laurel Mayer +76 more

The upper and lower respiratory tract microbiome in severe aspiration pneumonia

iScience(2023)10.1016/j.isci.2023.106832

N/A

0DataRank · unranked

25 citations

Vi D. Nguyen, Khaled Sayed, Nameer Al‐Yousif, Caitlin Schaefer, Faraaz Shah +18 more

Early events marking lung fibroblast transition to profibrotic state in idiopathic pulmonary fibrosis

Respiratory Research(2023)10.1186/s12931-023-02419-0

N/A

0DataRank · unranked

22 citations

Lorena Rosas, Maria G. Kapetanaki, Tracy Tabib, John Sebrat, Tamara Cruz +6 more

LEF1 isoforms regulate cellular senescence and aging

Aging Cell(2023)10.1111/acel.14024

N/A

0DataRank · unranked

15 citations

Khaled Sayed, Maria G. Kapetanaki, William Dion, Lorena Rosas, Saad Irfan +7 more

An intrinsically interpretable neural network architecture for sequence-to-function learning

Bioinformatics(2023)10.1093/bioinformatics/btad271

N/A

0DataRank · unranked

6 citations

Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria Chikina, Ali Tuğrul Balcı

Distinct COPD subtypes in former smokers revealed by gene network perturbation analysis

Respiratory Research(2023)10.1186/s12931-023-02316-6

N/A

0DataRank · unranked

8 citations

Craig Riley, Aabida Saferali, Peter J. Castaldi, Grace Zhang, François Aguet +17 more

The plasma degradome reflects later development of NASH fibrosis after liver transplant

Scientific Reports(2023)10.1038/s41598-023-36867-x

N/A

0DataRank · unranked

5 citations

Toshifumi Sato, María Hernández‐Tejero, Juliane I. Beier, Khaled Sayed, Panayiotis V. Benos +6 more

CellularPotts.jl: simulating multiscale cellular models in Julia

Bioinformatics(2023)10.1093/bioinformatics/btad773

N/A

0DataRank · unranked

1 citations

Panayiotis V. Benos, Robert W. Gregg

The plasma degradome reflects later development of NASH fibrosis after liver transplant

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526241

N/A

0DataRank · unranked

1 citations

Toshifumi Sato, María Hernández‐Tejero, Juliane I. Beier, Khaled Sayed, Panayiotis V. Benos +6 more

The evolution of radiographic edema in ARDS and its association with clinical outcomes: A prospective cohort study in adult patients

Journal of Critical Care(2020)10.1016/j.jcrc.2020.01.012

N/A

0DataRank · unranked

66 citations

Libing Yang, John Evankovich, William Bain, D.G. Dunlap, Faraaz Shah +10 more

Prognostic Insights from Longitudinal Multicompartment Study of Host-Microbiota Interactions in Critically Ill Patients

medRxiv(2023)10.1101/2023.09.25.23296086

N/A

0DataRank · unranked

1 citations

Khaled Sayed, Adam Fitch, Haopu Yang, Noel Britton, Faraaz Shah +18 more

A plasma peptidomic signature reveals extracellular matrix remodeling and predicts prognosis in alcohol-related hepatitis

medRxiv(2023)10.1101/2023.12.13.23299905

N/A

0DataRank · unranked

0 citations

Christine E. Dolin, Daniel W. Wilkey, Jiang Li, Toshifumi Sato, Juliane I. Beier +7 more

Longitudinal multicompartment characterization of host-microbiota interactions in patients with acute respiratory failure

Nature Communications(2024)10.1038/s41467-024-48819-8

N/A

0DataRank · unranked

36 citations

Khaled Sayed, Adam Fitch, Haopu Yang, Noel Britton, Faraaz Shah +18 more

The Florida Scoring System for stratifying children with suspected Sjögren's disease: a cross-sectional machine learning study

The Lancet Rheumatology(2024)10.1016/s2665-9913(24)00059-6

N/A

0DataRank · unranked

17 citations

Akaluck Thatayatikom, Nicole Winn, Tyler Lovelace, Indraneel Bhattacharyya, Thomas Schrepfer +5 more

Development and validation of a mortality risk prediction model for chronic obstructive pulmonary disease: a cross-sectional study using probabilistic graphical modelling

EClinicalMedicine(2024)10.1016/j.eclinm.2024.102786

N/A

0DataRank · unranked

7 citations

Min Hyung Ryu, Minxue Jia, Peter J. Castaldi, Frank C. Sciurba, Craig P. Hersh +2 more

A hybrid constrained continuous optimization approach for optimal causal discovery from biological data

Bioinformatics(2024)10.1093/bioinformatics/btae411

N/A

0DataRank · unranked

7 citations

Panayiotis V. Benos, Maria Chikina, Yuehua Zhu

Lung Epithelium Releases Growth Differentiation Factor 15 in Response to Pathogen-mediated Injury

American Journal of Respiratory Cell and Molecular Biology(2024)10.1165/rcmb.2023-0429oc

N/A

0DataRank · unranked

6 citations

Harinath Bahudhanapati, Mao Jiang, Mohammadreza Tabary, Rick van der Geest, Nathanial J. Tolman +24 more

Cellular and transcriptional profiles of peripheral blood mononuclear cells pre-vaccination predict immune response to preventative MUC1 vaccine

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.14.598031

N/A

0DataRank · unranked

0 citations

Michelle L. McKeague, Vineet K. Raghu, Robert E. Schoen, Olivera J. Finn, Panayiotis V. Benos +1 more

The Physiology of the WEight-Reduced State (POWERS) study: environmental, psychological, and social determinants of health

International Journal of Obesity(2025)10.1038/s41366-025-01911-5

N/A

0DataRank · unranked

2 citations

Giada Benasi, John M. Jakicic, Wendy C. King, Susan Z. Yanovski, Stephanie Kelley +75 more

The transcriptome of CD14 + CD163 − HLA-DR low monocytes predicts mortality in idiopathic pulmonary fibrosis

European Respiratory Journal(2025)10.1183/13993003.00804-2025

N/A

0DataRank · unranked

2 citations

Minxue Jia, Bochra Tourki, Zainab Fatima, Bogdan Visinescu, Carole Y. Perrot +19 more

Characterization of senescence-associated transcripts in the human placenta

Placenta(2025)10.1016/j.placenta.2025.01.009

N/A

0DataRank · unranked

5 citations

A. Bauer, W. Tony Parks, Tyler Lovelace, Panayiotis V. Benos, Tianjiao Chu +2 more

Altered AP-1, RUNX, and EGR chromatin dynamics drive human fibrotic lung disease

Annals of the Rheumatic Diseases(2025)10.1016/j.ard.2025.12.003

N/A

0DataRank · unranked

2 citations

Minxue Jia, Peter Gerges, Jingyu Fan, Tracy Tabib, Rithika Behera +10 more

Immune cell transcriptional profiles from pre-vaccination peripheral blood predict immune response to preventative MUC1 cancer vaccine

European Journal of Cancer(2025)10.1016/j.ejca.2025.115685

N/A

0DataRank · unranked

1 citations

Michelle L. McKeague, Vineet K. Raghu, Robert E. Schoen, Olivera J. Finn, Panayiotis V. Benos +1 more

Identifying Metabolomic Biomarkers of Lung Function Decline in People with HIV

JAIDS Journal of Acquired Immune Deficiency Syndromes(2025)10.1097/qai.0000000000003689

N/A

0DataRank · unranked

0 citations

Stacy G. Wendell, Barbara A. Methé, Steven J. Mullett, Biying Zhang, Kelvin Li +8 more

Alpha diversity analysis of hepatic transcriptome reveals novel pathways in alcohol-related hepatitis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.08.681263

N/A

0DataRank · unranked

0 citations

Jiajun Liu, Silvia Liu, Marissa Di, Juliane I. Beier, Ramón Bataller +4 more

eNAMPT/TLR4 signaling drives PAH cellular phenotypic switching and lung vascular remodeling

Cell Communication and Signaling(2025)10.1186/s12964-025-02421-7

N/A

0DataRank · unranked

0 citations

Shaira Limson Kee, Nahla Zaghloul, Nancy G. Casanova, Marisela Rodriguez, Carrie L. Kempf +13 more

Machine Learning-Based Size Estimation of the Lumbar Bone Using Simulated Radio Frequency Scattering Parameters

(2025)10.1109/ap-s/cnc-usnc-ursi55537.2025.11266087

N/A

0DataRank · unranked

0 citations

Myles Joshua Toledo Tan, Panayiotis V. Benos, Yong‐Kyu Yoon, Alfredo Bayu Satriya

Association of disability with COVID-19 outcomes in older adults: a prospective analysis of the US health and retirement study

BMJ Public Health(2025)10.1136/bmjph-2025-003116

N/A

0DataRank · unranked

0 citations

Inyoung Jun, Rosha A Loach, Aryaman Sriram, Nichole E. Stetten, Panayiotis V. Benos +2 more

LEF1 isoforms regulate cellular senescence and aging

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.20.549883

N/A

0DataRank · unranked

1 citations

Khaled Sayed, Maria G. Kapetanaki, William Dion, Lorena Rosas, Saad Irfan +7 more

miR-1207-5p Can Contribute to Dysregulation of Inflammatory Response in COVID-19 via Targeting SARS-CoV-2 RNA

Frontiers in Cellular and Infection Microbiology(2020)10.3389/fcimb.2020.586592

N/A

0DataRank · unranked

42 citations

Chiara Cipollina, Panayiotis V. Benos, Michele Tumminello, Claudia Coronnello, Giorgio Bertolazzi

CausalMGM: an interactive web-based causal discovery tool

Nucleic Acids Research(2020)10.1093/nar/gkaa350

N/A

0DataRank · unranked

19 citations

Vineet K. Raghu, Panos K. Chrysanthis, Panayiotis V. Benos, Xiaoyu Ge

An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs

BMC Bioinformatics(2020)10.1186/s12859-020-3519-5

N/A

0DataRank · unranked

17 citations

Panayiotis V. Benos, Michele Tumminello, Claudia Coronnello, Giorgio Bertolazzi

Compensatory hepatic adaptation accompanies permanent absence of intrahepatic biliary network due to YAP1 loss in liver progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.349159

N/A

0DataRank · unranked

6 citations

Junjie Zhu, Qin Li, Tirthadipa Pradhan‐Sundd, Khaled Sayed, Nathaniel E. C. Jenkins +17 more

Transcriptomics of Bronchoalveolar Lavage Cells Identifies New Molecular Endotypes of Sarcoidosis

medRxiv(2020)10.1101/2020.07.24.20161448

N/A

0DataRank · unranked

5 citations

Xiting Yan, Kevin F. Gibson, Mridu Gulati, Jonas C. Schupp, Giuseppe DeIuliis +24 more

Topographic Heterogeneity of Lung Microbiota in End-Stage Idiopathic Pulmonary Fibrosis: The Microbiome in Lung Explants-2 (MiLEs-2) Study

medRxiv(2020)10.1101/2020.03.05.20031021

N/A

0DataRank · unranked

0 citations

Haopu Yang, John Sembrat, Libing Yang, Spencer Winters, Rachel Nettles +13 more

Plasma (1→3) β-d-glucan levels are associated with host inflammatory responses and predict adverse clinical outcomes in critical illness

medRxiv(2020)10.1101/2020.06.11.20128264

N/A

0DataRank · unranked

0 citations

Daniel Kotok, Haopu Yang, Malcolm Finkelman, Yonglong Zhang, Noel Britton +9 more

Compensatory hepatic adaptation accompanies permanent absence of intrahepatic biliary network due to YAP1 loss in liver progenitors

Cell Reports(2021)10.1016/j.celrep.2021.109310

N/A

0DataRank · unranked

35 citations

Junjie Zhu, Li Qin, Tirthadipa Pradhan‐Sundd, Yekaterina Krutsenko, Khaled Sayed +20 more

Human ex vivo lung perfusion: a novel model to study human lung diseases

Scientific Reports(2021)10.1038/s41598-020-79434-4

N/A

0DataRank · unranked

30 citations

John Sembrat, Kentaro Noda, Tyler Lovelace, Diana Álvarez, Humberto E. Trejo Bittar +6 more

Plasma 1,3-β-d-glucan levels predict adverse clinical outcomes in critical illness

JCI Insight(2021)10.1172/jci.insight.141277

N/A

0DataRank · unranked

20 citations

Daniel Kotok, Haopu Yang, Malcolm Finkelman, Yonglong Zhang, Noel Britton +15 more

Bifurcated monocyte states are predictive of mortality in severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.10.430499

N/A

0DataRank · unranked

9 citations

Ashwin Somasundaram, Feng Shan, Carly Cardello, Creg J. Workman, Georgios D. Kitsios +24 more

Causal inference using deep-learning variable selection identifies and incorporates direct and indirect causalities in complex biological systems

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.17.452800

N/A

0DataRank · unranked

1 citations

Kate F. Kernan, Panayiotis V. Benos, Scott Canna, Joseph A. Carcillo, Soyeon Kim +2 more

Lipidomic signatures align with inflammatory patterns and outcomes in critical illness

Nature Communications(2022)10.1038/s41467-022-34420-4

N/A

0DataRank · unranked

55 citations

Anthony R. Cyr, Danielle S. Gruen, Tyler Lovelace, Panayiotis V. Benos, Jishnu Das +55 more

Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets

Patterns(2022)10.1016/j.patter.2022.100473

N/A

0DataRank · unranked

15 citations

Tyler Lovelace, Florentina Bunea, Marten Wegkamp, Sudhir Pai Kasturi, Harinder Singh +3 more

Deep neural networks with knockoff features identify nonlinear causal relations and estimate effect sizes in complex biological systems

GigaScience(2022)10.1093/gigascience/giad044

N/A

0DataRank · unranked

8 citations

Kate F. Kernan, Aditya Sriram, Panayiotis V. Benos, Scott Canna, Joseph A. Carcillo +3 more

Foxm1 drives cardiomyocyte proliferation in adult zebrafish after cardiac injury

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.22.497073

N/A

0DataRank · unranked

2 citations

Maria A Missinato, Lucas Santana‐Santos, Guang Li, Panayiotis V. Benos, Michael Tsang +1 more

Transcriptional changes of the aging lung

Aging Cell(2023)10.1111/acel.13969

N/A

0DataRank · unranked

30 citations

Paula A. Agudelo Garcia, José Antonio Ovando-Ricárdez, Tracy Tabib, Humberto E. Trejo Bittar, Robert Lafyatis +4 more

Integrated unbiased multiomics defines disease-independent placental clusters in common obstetrical syndromes

BMC Medicine(2023)10.1186/s12916-023-03054-8

N/A

0DataRank · unranked

22 citations

Tyler Lovelace, Samantha N. Piekos, Tianjiao Chu, Zhishen Cao, Elena Sadovsky +8 more

Panayiotis V. Benos

Indexed papers

Top data-sharing exemplar

Papers