🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Kathleen Collins

University of California, Berkeley

ORCID: 0000-0003-3172-7088
MedicineBiochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Telomere length set point regulation in human pluripotent stem cells critically depends on the shelterin protein TPP1”.

Telomere length set point regulation in human pluripotent stem cells critically depends on the shelterin protein TPP1

Molecular Biology of the Cell(2020)10.1091/mbc.e19-08-0447
N/A
0.442DataRank · unranked
18 citations

Kelsey M. Hennick, Samuel G. Regalado, Jacob M. Vogan, Xiaozhu Zhang, Kathleen Collins +2 more

Deep sequencing of yeast and mouse tRNAs and tRNA fragments using OTTR

eLife(2025)10.7554/elife.77616
N/A
0.429DataRank · unranked
11 citations

Lucas Ferguson, Carolina Galan, Tianxiong Yu, Heather E. Upton, Ebru Kaymak +4 more

Improved precision, sensitivity, and adaptability of ordered two-template relay cDNA library preparation for RNA sequencing

RNA(2024)10.1261/rna.080318.124
N/A
0.241DataRank · unranked
4 citations

Heather E. Upton, Sydney C. Pimentel, Chris Jeans, Nicholas T. Ingolia, Kathleen Collins +1 more

Separable structural requirements for cDNA synthesis, nontemplated extension, and template jumping by a non-LTR retroelement reverse transcriptase

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101624
N/A
0DataRank · unranked
15 citations

Heather E. Upton, Kathleen Collins, Sydney C. Pimentel

Deep sequencing of yeast and mouse tRNAs and tRNA fragments using OTTR

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.04.479139
N/A
0DataRank · unranked
19 citations

Carolina Galan, Tianxiong Yu, Heather E. Upton, Lucas Ferguson, Ebru Kaymak +4 more

Streamlined and sensitive mono- and diribosome profiling in yeast and human cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.01.526718
N/A
0DataRank · unranked
6 citations

Heather E. Upton, Sydney C. Pimentel, Amanda Mok, Liana F. Lareau, Kathleen Collins +2 more

Harnessing eukaryotic retroelement proteins for transgene insertion into human safe-harbor loci

Nature Biotechnology(2024)10.1038/s41587-024-02137-y
N/A
0DataRank · unranked
55 citations

Briana Van Treeck, Connor A. Horton, Jeremy J. R. McIntyre, Sarah M. Palm, Justin L Shumate +2 more

Conserved and divergent DNA recognition specificities and functions of R2 retrotransposon N-terminal domains

Cell Reports(2024)10.1016/j.celrep.2024.114239
N/A
0DataRank · unranked
14 citations

Connor A. Horton, Briana Van Treeck, Jeremy J. R. McIntyre, Kathleen Collins, Rosa Jooyoung Lee

Distinct and overlapping RNA determinants for binding and target-primed reverse transcription by Bombyx mori R2 retrotransposon protein

Nucleic Acids Research(2024)10.1093/nar/gkae194
N/A
0DataRank · unranked
10 citations

Kathleen Collins, Anthony Rodríguez-Vargas

Structure and sequence at an RNA template 5′ end influence insertion of transgenes by an R2 retrotransposon protein

RNA(2024)10.1261/rna.080031.124
N/A
0DataRank · unranked
7 citations

Connor A. Horton, Xiaozhu Zhang, Kathleen Collins, Sarah M. Palm

WITHDRAWN: Gammaherpesvirus infection alters transfer RNA splicing and triggers tRNA cleavage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.16.580780
N/A
0DataRank · unranked
2 citations

Mahmoud M. Bashir, Ariana R. Jimenez, Heather E. Upton, Kathleen Collins, Todd M. Lowe +2 more

Gammaherpesvirus infection triggers the formation of tRNA fragments from premature tRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.01.592122
N/A
0DataRank · unranked
2 citations

Mahmoud M. Bashir, Ariana R. Jimenez, Heather E. Upton, Kathleen Collins, Todd M. Lowe +2 more

Structural and biochemical studies of mobile retrotransposon proteins in action

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2025.103053
N/A
0DataRank · unranked
3 citations

Kathleen Collins, Eva Nogales, Akanksha Thawani

Comprehensive drug policies increase trust in local government: an analysis of authorities’ and residents’ perspectives in rural US Appalachian and Midwestern counties

Harm Reduction Journal(2025)10.1186/s12954-024-01148-x
N/A
0DataRank · unranked
0 citations

Man‐pui Sally Chan, The Grid for Reduction of Vulnerability, Marta R. Durantini, Dolores Albarracin, Alesha Harris +95 more

Low-bias ncRNA libraries using ordered two-template relay: Serial template jumping by a modified retroelement reverse transcriptase

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2107900118
N/A
0DataRank · unranked
76 citations

Lucas Ferguson, Morayma M. Temoche-Diaz, Xiao‐Man Liu, Sydney C. Pimentel, Nicholas T. Ingolia +3 more

Low-bias ncRNA Libraries using Ordered Two-Template Relay: Serial Template Jumping by a Modified Retroelement Reverse Transcriptase

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.30.442027
N/A
0DataRank · unranked
8 citations

Lucas Ferguson, Morayma M. Temoche-Diaz, Xiao‐Man Liu, Sydney C. Pimentel, Nicholas T. Ingolia +3 more