🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Brian Hie

Stanford Health Care

ORCID: 0000-0003-3224-8142

Also affiliated with Palo Alto Institute, Stanford Medicine, Arc Research Institute, Stanford University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 14 papers. Top paper: “Evolutionary-scale prediction of atomic-level protein structure with a language model”.

Evolutionary-scale prediction of atomic-level protein structure with a language model

Science(2023)10.1126/science.ade2574

N/A

1.3DataRank · unranked

4605 citations

Halil Akin, Roshan Rao, Brian Hie, Zhongkai Zhu, Wenting Lu +10 more

Unsupervised evolution of protein and antibody complexes with a structure-informed language model

Science(2024)10.1126/science.adk8946

N/A

0.744DataRank · unranked

142 citations

Theodora U. J. Bruun, Brian Hie, Peter S. Kim, Varun R. Shanker

Large language models for science and medicine

European Journal of Clinical Investigation(2024)10.1111/eci.14183

N/A

0.601DataRank · unranked

54 citations

Michael Auli, Cyrus Maher, Suchi Saria, John P. A. Ioannidis, Brian Hie +2 more

Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities

Genome biology(2021)10.1186/s13059-021-02313-2

N/A

0.578DataRank · unranked

46 citations

Brian Hie, Ashwin Narayan, Bonnie Berger, Rohit Singh

BHLHE40 Regulates Myeloid Cell Polarization through IL-10–Dependent and –Independent Mechanisms

The Journal of Immunology(2024)10.4049/jimmunol.2200819

N/A

0.278DataRank · unranked

4 citations

Yassin Mreyoud, Michael E. McNehlan, Asya Smirnov, Sthefany M. Chavez, Brian Hie +9 more

GM-CSF differentiation of human monocytes stabilizes macrophage state via oxidative signaling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.29.318352

N/A

0DataRank · unranked

2 citations

Cal Gunnarsson, Gregory H. Babunovic, Armel Nibasumba, Ngomu Akeem Akilimali, Marc H. Wadsworth +8 more

Learning the language of viral evolution and escape

Science(2021)10.1126/science.abd7331

N/A

0DataRank · unranked

382 citations

Ellen D. Zhong, Bonnie Berger, Bryan D. Bryson, Brian Hie

Leveraging Uncertainty in Machine Learning Accelerates Biological Discovery and Design

Cell Systems(2020)10.1016/j.cels.2020.09.007

N/A

0DataRank · unranked

162 citations

Bryan D. Bryson, Bonnie Berger, Brian Hie

Efficient evolution of human antibodies from general protein language models

Nature Biotechnology(2023)10.1038/s41587-023-01763-2

N/A

0DataRank · unranked

453 citations

Varun R. Shanker, Duo Xu, Theodora U. J. Bruun, Payton A. Weidenbacher, Shaogeng Tang +4 more

Scanorama: integrating large and diverse single-cell transcriptomic datasets

Nature Protocols(2024)10.1038/s41596-024-00991-3

N/A

0DataRank · unranked

42 citations

Soochi Kim, Thomas A. Rando, Bryan D. Bryson, Bonnie Berger, Brian Hie

Utilizing Machine Learning to Improve Neutralization Potency of an HIV-1 Antibody Targeting the gp41 N-Heptad Repeat

ACS Chemical Biology(2025)10.1021/acschembio.5c00035

N/A

0DataRank · unranked

1 citations

Shaogeng Tang, Soohyun Kim, Varun R. Shanker, Brian Hie, Theodora U. J. Bruun +5 more

Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd

Molecular Systems Biology(2021)10.15252/msb.202110402

N/A

0DataRank · unranked

14 citations

Marco Tognetti, Alice Driessen, Jovan Tanevski, Baosen Guo, Wencai Cao +90 more

Learning the language of viral evolution and escape

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.08.193946

N/A

0DataRank · unranked

7 citations

Ellen D. Zhong, Bonnie Berger, Bryan D. Bryson, Brian Hie

Learning with uncertainty for biological discovery and design

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.11.247072

N/A

0DataRank · unranked

5 citations

Bryan D. Bryson, Bonnie Berger, Brian Hie