Gabriele Scalia

Also affiliated with Kaiser Permanente South San Francisco Medical Center, Atotech (United States)

Biochemistry, Genetics and Molecular BiologyComputer ScienceSocial Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

1.9Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.272831

Top 11%

1.9DataRank

Top 11%36 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +15 more

Papers

Driven by 16 papers — median percentile 89. Top paper: “A cell atlas foundation model for scalable search of similar human cells”.

A cell atlas foundation model for scalable search of similar human cells

Nature(2024)10.1038/s41586-024-08411-y

N/A

2.1DataRank · unranked

114 citations

Tony Kuo, Daryle J. DePianto, Omar Salem, Tobias Heigl, Nathaniel Diamant +9 more

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.29.272831

Top 11%

1.9DataRank

Top 11%36 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +15 more

SpatialAgent: An autonomous AI agent for spatial biology

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.03.646459

N/A

1.5DataRank · unranked

47 citations

Yichun He, Paula P. Coelho, Matthew Bucci, Abbas Nazir, Bob Chen +35 more

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram

Nature Methods(2021)10.1038/s41592-021-01264-7

N/A

1.0DataRank · unranked

856 citations

Gabriele Scalia, Lorenzo Buffoni, Raghav Avasthi, Ziqing Lu, Aman Sanger +17 more

Molecular logic of cellular diversification in the mouse cerebral cortex

Nature(2021)10.1038/s41586-021-03670-5

N/A

0.925DataRank · unranked

475 citations

Ehsan Habibi, Robert R. Stickels, Gabriele Scalia, Juliana Brown, Payman Yadollahpour +8 more

Decoding sequence determinants of gene expression in diverse cellular and disease states

Nature Methods(2026)10.1038/s41592-026-03102-0

N/A

0.464DataRank · unranked

21 citations

Alexander Karollus, Laura M. Gunsalus, David Garfield, Surag Nair, Alex M. Tseng +11 more

Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain

Scientific Reports(2023)10.1038/s41598-023-36638-8

N/A

0.457DataRank · unranked

20 citations

Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal +13 more

Gene-embedding-based prediction and functional evaluation of perturbation expression responses with PRESAGE

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.03.657653

N/A

0.405DataRank · unranked

6 citations

Jacob Levine, Sepideh Maleki, Yong‐Ju Lee, Vladimir Ermakov, Lin Qiu +10 more

A high-throughput phenotypic screen combined with an ultra-large-scale deep learning-based virtual screening reveals novel scaffolds of antibacterial compounds

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.11.612340

N/A

0.324DataRank · unranked

5 citations

Steven T. Rutherford, Ziqing Lu, Kerry R. Buchholz, Nicholas J. Skelton, Kangway V. Chuang +16 more

Deep-learning-based virtual screening of antibacterial compounds

Nature Biotechnology(2025)10.1038/s41587-025-02814-6

N/A

0.300DataRank · unranked

4 citations

Steven T. Rutherford, Ziqing Lu, Kerry R. Buchholz, Nathaniel Diamant, Jan-Christian Hütter +16 more

Derivative-Free Guidance in Continuous and Discrete Diffusion Models with Soft Value-Based Decoding

arXiv (Cornell University)(2024)10.48550/arxiv.2408.08252

N/A

0.182DataRank · unranked

2 citations

Yulai Zhao, Chenyu Wang, Gabriele Scalia, Gökçen Eraslan, Surag Nair +6 more

PerTurboAgent: A Self-Planning Agent for Boosting Sequential Perturb-seq Experiments

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.25.656020

N/A

0.165DataRank · unranked

2 citations

Yong‐Ju Lee, Hanchen Wang, Gabriele Scalia, Prisca Liberali, Yong-Ju Lee +1 more

Author Correction: Molecular logic of cellular diversification in the mouse cerebral cortex

Nature(2021)10.1038/s41586-021-03797-5

N/A

0.152DataRank · unranked

1 citations

Ehsan Habibi, Robert R. Stickels, Gabriele Scalia, Juliana Brown, Payman Yadollahpour +8 more

Learning Multi-cellular Representations of Single-Cell Transcriptomics Data Enables Characterization of Patient-Level Disease States

Lecture Notes in Computer Science(2025)10.1007/978-3-031-90252-9_27

N/A

0.135DataRank · unranked

1 citations

Edward De Brouwer, Tony Kuo, Nathaniel Diamant, Alsu Missarova, Hanchen Wang +6 more

Dynamic Search for Inference-Time Alignment in Diffusion Models

arXiv (Cornell University)(2025)10.48550/arxiv.2503.02039

N/A

0DataRank · unranked

0 citations

Masatoshi Uehara, Xingyu Su, Gabriele Scalia, Tommaso Biancalani, Prisca Liberali +3 more

Publisher Correction: Deep-learning-based virtual screening of antibacterial compounds

Nature Biotechnology(2025)10.1038/s41587-025-02941-0

N/A