🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Benjamin Webb

University of California, San Francisco

ORCID: 0000-0003-3360-4540
Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.3Author DataRank

Indexed papers

8in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Protein Science(2022)10.1002/pro.4482
Top 11%
2.0DataRank
Top 11%107 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen +36 more

Papers

Driven by 14 papers — median percentile 59. Top paper: “RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D”.

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Protein Science(2022)10.1002/pro.4482
Top 11%
2.0DataRank
Top 11%107 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen +36 more

New system for archiving integrative structures

Acta Crystallographica Section D Structural Biology(2021)10.1107/s2059798321010871
Top 17%
1.2DataRank
Top 17%43 citations

Benjamin Webb, Maryam Fayazi, Serban Voinea, Hongsuda Tangmunarunkit, Sai J. Ganesan +6 more

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168021
Top 31%
0.630DataRank
Top 31%22 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models

Nucleic Acids Research(2025)10.1093/nar/gkaf1187
Top 40%
0.483DataRank
Top 40%17 citations

Yana Rose, Dennis W. Piehl, José M. Duarte, Sebastian Bittrich, Chunxiao Bi +21 more

PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.168963
Top 43%
0.439DataRank
Top 43%12 citations

Benjamin Webb, Arthur O. Zalevsky, Hongsuda Tangmunarunkit, Monica Sekharan, Serban Voinea +11 more

IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168546
Top 46%
0.395DataRank
Top 46%11 citations

Benjamin Webb, John Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei +30 more

ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.06.518550
Top 63%
0.216DataRank
Top 63%3 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169598
Top 100%
0DataRank
Top 100%0 citations

Brinda Vallat, Benjamin Webb, Hongsuda Tangmunarunkit, Monica Sekharan, Aref Shafaeibejestan +22 more

Archiving Integrative Structural Models

Biophysical Journal(2021)10.1016/j.bpj.2020.11.1702
N/A
0DataRank · unranked
0 citations

Benjamin Webb, John Westbrook, Hongsuda Tangmunarunkit, Serban Voinea, Carl Kesselman +3 more

Integration of software tools for integrative modeling of biomolecular systems

Journal of Structural Biology(2022)10.1016/j.jsb.2022.107841
N/A
0DataRank · unranked
19 citations

Thomas-Otavio Peulen, Benjamin Webb, Billy K. Poon, James S. Fraser, Paul D. Adams +2 more

Making fluorescence-based integrative structures and associated kinetic information accessible

Nature Methods(2024)10.1038/s41592-024-02428-x
N/A
0DataRank · unranked
4 citations

John Westbrook, Benjamin Webb, Thomas-Otavio Peulen, Catherine L. Lawson, Andrej Sali +4 more

Recognizing amino acid sidechains in a medium resolution cryo-electron density map

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627859
N/A
0DataRank · unranked
0 citations

Vipul Kumar, Tadej Satler, Ramachandran Rakesh, Daniel J. Saltzberg, Ilan E. Chemmama +7 more

tttrlib: modular software for integrating fluorescence spectroscopy, imaging, and molecular modeling

Bioinformatics(2025)10.1093/bioinformatics/btaf025
N/A
0DataRank · unranked
10 citations

Katherina Hemmen, Annemarie Greife, Benjamin Webb, Suren Felekyan, Andrej Săli +4 more

Tutorial on integrative spatiotemporal modeling by integrative modeling platform

Protein Science(2025)10.1002/pro.70107
N/A
0DataRank · unranked
0 citations

Miha Rožič, Benjamin Webb, Andrej Săli, Andrew P. Latham