Trygve E. Bakken

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

23.9Author DataRank

Indexed papers

13in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 13 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The complete genome sequence of a Neanderthal from the Altai Mountains

Nature(2013)10.1038/nature12886

Top 2%

7.2DataRank

Top 2%2430 citations

Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer +45 more

Papers

Driven by 52 papers — median percentile 86. Top paper: “The complete genome sequence of a Neanderthal from the Altai Mountains”.

The complete genome sequence of a Neanderthal from the Altai Mountains

Nature(2013)10.1038/nature12886

Top 2%

7.2DataRank

Top 2%2430 citations

Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer +45 more

Human neocortical expansion involves glutamatergic neuron diversification

Nature(2021)10.1038/s41586-021-03813-8

N/A

6.0DataRank · unranked

325 citations

Staci A. Sorensen, Jonathan T. Ting, Jeremy A. Miller, Thomas Chartrand, Anatoly Buchin +95 more

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

A comparative atlas of single-cell chromatin accessibility in the human brain

Science(2023)10.1126/science.adf7044

Top 7%

3.2DataRank

Top 7%159 citations

Sebastian Preissl, Michael Miller, Nicholas D. Johnson, Zihan Wang, Henry Jiao +34 more

Comparative transcriptomics reveals human-specific cortical features

Science(2023)10.1126/science.ade9516

N/A

2.8DataRank · unranked

205 citations

Janet Song, David Exposito-Alonso, Hamsini Suresh, Nathan Castro-Pacheco, Fenna M. Krienen +39 more

Transcriptomic diversity of cell types across the adult human brain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.12.511898

Top 8%

2.7DataRank

Top 8%97 citations

Rebecca D. Hodge, Alejandro Mossi Albiach, Lijuan Hu, Ka Wai Lee, Peter Lönnerberg +14 more

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.016972

N/A

2.4DataRank · unranked

90 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +99 more

Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans

eLife(2021)10.7554/elife.64875

N/A

2.0DataRank · unranked

89 citations

Cindy T. J. van Velthoven, Vilas Menon, Rebecca D. Hodge, Zizhen Yao, Thuc Nghi Nguyen +24 more

Single-cell genomics and regulatory networks for 388 human brains

Science(2024)10.1126/science.adi5199

Top 12%

1.7DataRank

Top 12%155 citations

Jason Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta +91 more

Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2203491119

Top 14%

1.5DataRank

Top 14%73 citations

Chang N. Kim, Trygve E. Bakken, Madelyn A. Gillentine, Barbara Henning, Yafei Mao +94 more

Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex

eLife(2023)10.7554/elife.81863

N/A

1.4DataRank · unranked

39 citations

Cristina Radaelli, Elliot R. Thomsen, Deja Monet, Thomas Chartrand, Nikolas L. Jorstad +32 more

Structurally divergent and recurrently mutated regions of primate genomes

Cell(2024)10.1016/j.cell.2024.01.052

Top 15%

1.4DataRank

Top 15%72 citations

William T. Harvey, David Porubsky, Katherine M. Munson, Kendra Hoekzema, Alexandra P. Lewis +29 more

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2021)10.1038/s41586-021-03465-8

N/A

1.0DataRank · unranked

818 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +101 more

Transcriptomic cytoarchitecture reveals principles of human neocortex organization

Science(2023)10.1126/science.adf6812

N/A

0.799DataRank · unranked

205 citations

Jennie Close, Nelson Johansen, Anna Marie Yanny, Eliza Barkan, Kyle J. Travaglini +38 more

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

Cell Genomics(2022)10.1016/j.xgen.2022.100107

N/A

0.765DataRank · unranked

163 citations

Hanqing Liu, Fangming Xie, Ethan J. Armand, Kimberly Siletti, Trygve E. Bakken +28 more

Oligodendrocyte precursor cells ingest axons in the mouse neocortex

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2202580119

N/A

0.750DataRank · unranked

147 citations

Leila Elabbady, Forrest Collman, Nikolas L. Jorstad, Trygve E. Bakken, Carolyn M. Ott +37 more

Recent ultra-rare inherited variants implicate new autism candidate risk genes

Nature Genetics(2021)10.1038/s41588-021-00899-8

N/A

0.749DataRank · unranked

146 citations

Tychele N. Turner, Shwetha C. Murali, PingHsun Hsieh, Arvis Sulovari, Tianyun Wang +38 more

Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex

Science(2023)10.1126/science.adf6484

N/A

0.727DataRank · unranked

126 citations

Rachel Dalley, Jeremy A. Miller, Thomas Chartrand, Jennie Close, Rusty Mann +95 more

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

Nature Communications(2020)10.1038/s41467-020-14952-3

N/A

0.700DataRank · unranked

105 citations

Jeremy A. Miller, Mark Novotny, Brian E. Kalmbach, Jonathan T. Ting, Trygve E. Bakken +22 more

A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing

Genome Research(2021)10.1101/gr.275569.121

N/A

0.686DataRank · unranked

96 citations

Yun Zhang, Mark Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller +5 more

Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

Science(2023)10.1126/science.adf0805

N/A

0.672DataRank · unranked

87 citations

Rachel Dalley, Jennie Close, Natalia A. Goriounova, Brian Lee, Rusty Mann +85 more

Interindividual variation in human cortical cell type abundance and expression

Science(2023)10.1126/science.adf2359

N/A

0.652DataRank · unranked

76 citations

Saroja Somasundaram, Kyle J. Travaglini, Anna Marie Yanny, Maya Shumyatcher, Tamara Casper +25 more

Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system

Nature Neuroscience(2024)10.1038/s41593-024-01827-9

N/A

0.613DataRank · unranked

18 citations

Trygve E. Bakken, Aparna Bhaduri, Chintan Chhatbar, Mariella G. Filbin, David Gate +21 more

Comparative transcriptomics reveals human-specific cortical features

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.19.508480

N/A

0.613DataRank · unranked

24 citations

Janet Song, David Exposito-Alonso, Hamsini Suresh, Nathan J. Castro, Fenna M. Krienen +38 more

A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types

Cell(2025)10.1016/j.cell.2025.05.002

N/A

0.604DataRank · unranked

55 citations

Marcus Hooper, Sujatha Narayan, Tanya L. Daigle, Deepanjali Dwivedi, Sharon W. Way +95 more

Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution

Nature Ecology & Evolution(2023)10.1038/s41559-023-02186-7

N/A

0.601DataRank · unranked

54 citations

Megan Crow, Nikolas L. Jorstad, Rebecca D. Hodge, Ed S. Lein, Alexander Dobin +3 more

Integrated gene analyses of de novo mutations from 46,612 trios with autism and developmental disorders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.15.460398

Top 33%

0.594DataRank

Top 33%13 citations

Chang H. Kim, Trygve E. Bakken, Madelyn A. Gillentine, Barbara Henning, Yafei Mao +4 more

Human cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neurons

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.018820

N/A

0.568DataRank · unranked

43 citations

Staci A. Sorensen, Jonathan T. Ting, Jeremy A. Miller, Thomas Chartrand, Anatoly Buchin +95 more

Morpho-electric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.511199

N/A

0.540DataRank · unranked

14 citations

Rachel Dalley, Jennie Close, Natalia A. Goriounova, Brian R. Lee, Rusty Mann +83 more

Signature morpho-electric properties of diverse GABAergic interneurons in the human neocortex

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515739

N/A

0.470DataRank · unranked

22 citations

Rachel Dalley, Jeremy A. Miller, Thomas Chartrand, Jennie Close, Rusty Mann +89 more

Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque

Cell Reports(2025)10.1016/j.celrep.2025.115730

N/A

0.457DataRank · unranked

20 citations

Nelson Johansen, Naz Taskin, Ananya Chowdhury, Meagan A. Quinlan, Alexander Fraser +53 more

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test

Briefings in Bioinformatics(2020)10.1093/bib/bbaa339

N/A

0.442DataRank · unranked

18 citations

Brian D. Aevermann, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, Ed S. Lein +2 more

An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome

Nature Communications(2024)10.1038/s41467-024-46070-9

Top 44%

0.426DataRank

Top 44%11 citations

Camille Ezran, Michael F. Z. Wang, Zhengda Li, Kyle Awayan, Snigdha Agarwal +95 more

Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

Cell Genomics(2025)10.1016/j.xgen.2025.100879

N/A

0.425DataRank · unranked

16 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Single-cell genomics and regulatory networks for 388 human brains

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.18.585576

Top 44%

0.419DataRank

Top 44%9 citations

Jason J. Liu, Declan Clarke, Matthew L. Jensen, Jonathan Warrell, Chirag Gupta +75 more

Oligodendrocyte precursor cells prune axons in the mouse neocortex

Research Square(2021)10.21203/rs.3.rs-581121/v1

N/A

0.373DataRank · unranked

11 citations

Leila Elabbady, Forrest Collman, Nicholas Jorstad, Trygve E. Bakken, Carolyn M. Ott +37 more

Signature morpho-electric, transcriptomic, and dendritic properties of extratelencephalic-projecting human layer 5 neocortical pyramidal neurons

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.365080

N/A

0.364DataRank · unranked

4 citations

Rebecca D. Hodge, Nikolas L. Jorstad, Scott F. Owen, Trygve E. Bakken, Rebecca de Frates +25 more

Parallel RNA and DNA analysis after Deep-sequencing (PRDD-seq) reveals cell type specific lineage patterns in human brain

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.19.046904

N/A

0.345DataRank · unranked

9 citations

Pengpeng Li, Rachel E. Rodin, Sonia N. Kim, Yanmei Dou, Connor Kenny +9 more

Cross-species consensus atlas of the primate basal ganglia

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.15.694496

Top 52%

0.330DataRank

Top 52%8 citations

Yuanyuan Fu, Matthew T. Schmitz, Alma Dubuc, Niklas Kempynck, Morgan Wirthlin +95 more

Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2022)10.1038/s41586-022-04562-y

N/A

0.317DataRank · unranked

5 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +104 more

Inter-individual variation in human cortical cell type abundance and expression

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.07.511366

N/A

0.269DataRank · unranked

5 citations

Saroja Somasundaram, Kyle J. Travaglini, Anna Marie Yanny, Maya Shumyatcher, Tamara Casper +25 more

Conserved coexpression at single cell resolution across primate brains

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.20.508736

N/A

0.241DataRank · unranked

4 citations

Megan Crow, Nikolas L. Jorstad, Rebecca D. Hodge, Ed S. Lein, Alexander Dobin +3 more

Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.21.609075

N/A

0.241DataRank · unranked

4 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

Single-cell Multiome Analysis of Chromatin State and Transcriptome in the Human Basal Ganglia

10.64898/2026.02.03.703645

N/A

0.208DataRank · unranked

3 citations

Kai Li, Yang Xie, Guojie Zhong, Jonathan A. Rink, Cindy Tatiana Báez-Becerra +55 more

Distinctive physiology of molecularly identified medium spiny neurons in the macaque putamen

Cell Reports(2024)10.1016/j.celrep.2024.114963

N/A

0.119DataRank · unranked

1 citations

Nelson Johansen, Brian E. Kalmbach, Naz Taskin, Brian Lee, Jason K. Clark +17 more

A complete and near-perfect rhesus macaque reference genome: lessons from subtelomeric repeats and sequencing bias

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.04.668424

Top 78%

0.104DataRank

Top 78%1 citations

Ning Xu, Yongfeng Lu, Yanhong Nie, Zhengtong Li, Luciana de Gennaro +14 more

HCN channels reveal conserved and divergent physiology in supragranular pyramidal neurons in primate species

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.22.671856

N/A

0.104DataRank · unranked

1 citations

Matthew T. Schmitz, Xiao-Ping Liu, Scott Sawchuk, Ximena Opitz-Araya, Mark Hudson +16 more

Circuit specific specialization of human basal ganglia astrocytes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.19.695583

N/A

0DataRank · unranked

1 citations

Nelson Johansen, Niklas Kempynck, Wubin Ding, Meghan A. Turner, Aaron D. Garcia +19 more

ANTIPODE Provides a Global View of Cell Type Homology and Transcriptomic Divergence in the Developing Mammalian Brain

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.18.683238

N/A

0DataRank · unranked

3 citations

Jiasheng Ding, Sara Nolbrant, Reed McMullen, Chang N. Kim, Bryan J. Pavlovic +5 more

A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases

PLoS Biology(2023)10.1371/journal.pbio.3002058

N/A

0DataRank · unranked

37 citations

Trygve E. Bakken, Thomas Nickl‐Jockschat, Zeru Peterson, Anil G. Jegga, Jeremy A. Miller +5 more

Transcriptomic cytoarchitecture reveals principles of human neocortex organization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.06.515349

N/A

0DataRank · unranked

15 citations

Jennie Close, Nelson Johansen, Anna Marie Yanny, Eliza Barkan, Kyle J. Travaglini +38 more

NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.23.308932

N/A

0DataRank · unranked

12 citations

Yun Zhang, Mark Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge +4 more

Trygve E. Bakken

Indexed papers

Top data-sharing exemplar

Papers