🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Josh L. Espinoza

J. Craig Venter Institute

ORCID: 0000-0003-3447-3845

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Genotypic diversity and unrecognized antifungal resistance among populations of Candida glabrata from positive blood cultures”.

Genotypic diversity and unrecognized antifungal resistance among populations of Candida glabrata from positive blood cultures

Nature Communications(2023)10.1038/s41467-023-41509-x
N/A
1.2DataRank · unranked
44 citations

Shaoji Cheng, Christopher L. Dupont, Binghua Hao, Eileen Driscoll, Kristin M. Morder +8 more

Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus

Cell Reports(2023)10.1016/j.celrep.2023.112494
N/A
0.574DataRank · unranked
45 citations

S. Brinton, Kellen Cavagnero, Alan M. O’Neill, Yang Chen, Tatsuya Dokoshi +8 more

Host-Microbiome Associations in Saliva Predict COVID-19 Severity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.02.539155
N/A
0.335DataRank · unranked
7 citations

Khaled Altabtbaei, Josh L. Espinoza, Saadoun Bin‐Hasan, Mohammad Alghounaim, Abdullah Alawady +10 more

Genotypic diversity and unrecognized antifungal resistance among populations of Candida glabrata from positive blood cultures

Research Square(2023)10.21203/rs.3.rs-2706400/v1
N/A
0.312DataRank · unranked
7 citations

Shaoji Cheng, Christopher L. Dupont, Binghua Hao, Eileen Driscoll, Kristen Morder +8 more

A Silent Operon of Photorhabdus luminescens Encodes a Prodrug Mimic of GTP

mBio(2022)10.1128/mbio.00700-22
N/A
0DataRank · unranked
23 citations

Boyuan Wang, Yu Imai, Miho Mori, Sangkeun Son, Libang Liang +10 more

Differential network analysis of oral microbiome metatranscriptomes identifies community scale metabolic restructuring in dental caries

PNAS Nexus(2022)10.1093/pnasnexus/pgac239
N/A
0DataRank · unranked
14 citations

Manolito Torralba, Pamela Leong, Richard Saffery, Michelle Bockmann, Claire Kuelbs +6 more

Efficient formation of single-copy human artificial chromosomes

Science(2024)10.1126/science.adj3566
N/A
0DataRank · unranked
32 citations

Gabriel J. Birchak, Elie Mer, David Brown, George Yankson, Kathryn Kixmoeller +9 more

Host–microbiome associations in saliva predict COVID-19 severity

PNAS Nexus(2024)10.1093/pnasnexus/pgae126
N/A
0DataRank · unranked
9 citations

Khaled Altabtbaei, Josh L. Espinoza, Saadoun Bin‐Hasan, Mohammad Alghounaim, Abdullah Alawady +10 more

Unveiling Molecular Diversity in Cerebral Thrombi via Spatial Transcriptomics

Stroke(2024)10.1161/strokeaha.124.047907
N/A
0DataRank · unranked
3 citations

Emma Federico, Josh L. Espinoza, Christopher L. Dupont, Melanie Walker

Unveiling the Microbial Realm with VEBA 2.0: A modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic, and viral multi-omics from either short- or long-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.08.583560
N/A
0DataRank · unranked
3 citations

Allan R. Phillips, Melanie B. Prentice, Gene S. Tan, Pauline L. Kamath, Karen G. Lloyd +2 more

Blood cultures contain populations of genetically diverse Candida albicans strains that may differ in echinocandin tolerance and virulence

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.16.618724
N/A
0DataRank · unranked
2 citations

Shaoji Cheng, Hassan Badrane, Christopher L. Dupont, Josh L. Espinoza, Darren Abbey +7 more

A synonymous UPF3B variant causing a speech disorder implicates NMD as a regulator of neurodevelopmental disorder gene networks

Human Molecular Genetics(2020)10.1093/hmg/ddaa151
N/A
0DataRank · unranked
20 citations

Urwah Nawaz, Mark Corbett, Josh L. Espinoza, Katrina Tatton‐Brown, David Coman +4 more

Blood Cultures Contain Populations of Genetically Diverse Candida albicans Strains that May Differ in Echinocandin Tolerance and Fitness

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf495
N/A
0DataRank · unranked
0 citations

Shaoji Cheng, Hassan Badrane, Christopher L. Dupont, Josh L. Espinoza, Darren Abbey +7 more

Applications of weighted association networks applied to compositional data in biology

Environmental Microbiology(2020)10.1111/1462-2920.15091
N/A
0DataRank · unranked
24 citations

Naisha Shah, Suren Singh, Karen E. Nelson, Christopher L. Dupont, Josh L. Espinoza

Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children

EBioMedicine(2021)10.1016/j.ebiom.2021.103644
N/A
0DataRank · unranked
30 citations

Josh L. Espinoza, Archibald Worwui, Modupeh Betts, Catherine Okoi, Abdul Karim Sesay +14 more

VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

BMC Bioinformatics(2022)10.1186/s12859-022-04973-8
N/A
0DataRank · unranked
28 citations

Christopher L. Dupont, Josh L. Espinoza