Sydney M. Shaffer

Also affiliated with University of Florida, Jacksonville University, California University of Pennsylvania, University of Pennsylvania

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “SAVER: gene expression recovery for single-cell RNA sequencing”.

SAVER: gene expression recovery for single-cell RNA sequencing

Nature Methods(2018)10.1038/s41592-018-0033-z

N/A

1.0DataRank · unranked

851 citations

Jingshu Wang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, Roberto Bonasio +7 more

Cancer-associated fibroblasts maintain critical pancreatic cancer cell lipid homeostasis in the tumor microenvironment

Cell Reports(2024)10.1016/j.celrep.2024.114972

N/A

0.870DataRank · unranked

38 citations

Michelle Burrows, Laura C. Kim, Jimmy P. Xu, Will Vostrejs, Tran Ngoc Van Le +10 more

Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors

Cell(2020)10.1016/j.cell.2020.07.003

N/A

0.803DataRank · unranked

210 citations

Benjamin Emert, Raúl A. Reyes Hueros, Christopher Coté, Guillaume Harmange, Dylan L. Schaff +7 more

Development of a functional beige fat cell line uncovers independent subclasses of cells expressing UCP1 and the futile creatine cycle

Cell Metabolism(2024)10.1016/j.cmet.2024.07.002

N/A

0.533DataRank · unranked

34 citations

Yizhi Sun, Amanda L. Smythers, Louisa Grauvogel, Phillip A. Dumesic, Margo P. Emont +13 more

Detection of blood–brain barrier disruption in brains of patients with COVID-19, but no evidence of brain penetration by SARS-CoV-2

Acta Neuropathologica(2023)10.1007/s00401-023-02624-7

N/A

0.449DataRank · unranked

19 citations

Alexandra Tomasevich, Kofi Acheampong, Dylan L. Schaff, Sydney M. Shaffer, Jean-Pierre Dollé +9 more

Non-genetic differences underlie variability in proliferation among esophageal epithelial clones

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012360

N/A

0.241DataRank · unranked

4 citations

Rodrigo A. Gier, Sydney M. Shaffer, Raúl A. Reyes Hueros

FOXM1 Modulation Alleviates Epithelial Remodeling and Inflammation in Eosinophilic Esophagitis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.25.655133

N/A

0.104DataRank · unranked

1 citations

Joshua X. Wang, Yusen Zhou, Kanak V. Kennedy, Ryugo Teranishi, Takefumi Itami +16 more

IGF2BP1/IMP1 Deletion Enhances a Facultative Stem Cell State via Regulation of MAP1LC3B

Cellular and Molecular Gastroenterology and Hepatology(2023)10.1016/j.jcmgh.2023.12.001

N/A

0DataRank · unranked

7 citations

Patrick A. Williams, Kay Katada, Shaneice K. Nettleford, Priya Chatterji, Kofi Acheampong +12 more

Clonal cell states link Barrett’s esophagus and esophageal adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525564

N/A

0DataRank · unranked

13 citations

Raúl A. Reyes Hueros, Jiazhen Rong, Maureen DeMarshall, Tatiana A. Karakasheva, Amanda B. Muir +4 more

Clonal differences underlie variable responses to sequential and prolonged treatment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.24.534152

N/A

0DataRank · unranked

2 citations

Aria J. Fasse, Phoebe E. White, Robert Vander Velde, Sydney M. Shaffer, Dylan L. Schaff

Non-genetic differences underlie variability in proliferation among esophageal epithelial clones

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.543080

N/A

0DataRank · unranked

1 citations

Rodrigo A. Gier, Sydney M. Shaffer, Raúl A. Reyes Hueros

Clonal differences underlie variable responses to sequential and prolonged treatment

Cell Systems(2024)10.1016/j.cels.2024.01.011

N/A

0DataRank · unranked

15 citations

Aria J. Fasse, Phoebe E. White, Robert Vander Velde, Sydney M. Shaffer, Dylan L. Schaff

Breaking reflection symmetry: evolving long dynamical cycles in Boolean systems

New Journal of Physics(2024)10.1088/1367-2630/ad1bdd

N/A

0DataRank · unranked

3 citations

Jason Z. Kim, Harmange Guillaume, Sydney M. Shaffer, Lee C. Bassett, Dani S. Bassett +1 more

Clonal cell states link gastroesophageal junction tissues with metaplasia and cancer

Nature Communications(2025)10.1038/s41467-025-66302-w

N/A

0DataRank · unranked

2 citations

Sydney A. Bracht, Jiazhen Rong, Raúl A. Reyes Hueros, Madison Wahlsten, Christopher Coté +8 more

Deciphering Cell Fate and Clonal Dynamics via Integrative Single-Cell Lineage Modeling

Research Square(2025)10.21203/rs.3.rs-7510946/v1

N/A

0DataRank · unranked

0 citations

Yuntian Fu, Divij Mathew, Mingshuang Wang, Xinyi Chen, Kevin Lin +5 more

Gastric epithelium from BRCA1 and BRCA2 carriers harbors increased double-stranded DNA damage and augmented growth

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.01.679809

N/A

0DataRank · unranked

0 citations

Michaela E. Dungan, Kevin Dinh, Greg Kelly, Ryan Hausler, Kate E Bennett +14 more

Variability within rare cell states enables multiple paths toward drug resistance

Nature Biotechnology(2021)10.1038/s41587-021-00837-3

N/A

0DataRank · unranked

190 citations

Christopher Coté, Eduardo A. Torre, Ian Dardani, Connie Jiang, Naveen Jain +3 more

Genetic screening for single-cell variability modulators driving therapy resistance

Nature Genetics(2021)10.1038/s41588-020-00749-z

N/A

0DataRank · unranked

79 citations

Eri Arai, Sareh Bayatpour, Connie Jiang, Lauren E. Beck, Benjamin Emert +9 more

Multiplexed detection of SARS-CoV-2 genomic and subgenomic RNA using in situ hybridization

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.11.455959

N/A

0DataRank · unranked

3 citations

Dylan L. Schaff, Benjamin Emert, Jonathan I. Lake, Sam Reffsin, Emily Shea +10 more

Subcellular Detection of SARS-CoV-2 RNA in Human Tissue Reveals Distinct Localization in Alveolar Type 2 Pneumocytes and Alveolar Macrophages

mBio(2022)10.1128/mbio.03751-21

N/A

0DataRank · unranked

32 citations

Dylan L. Schaff, Benjamin Emert, Jonathan I. Lake, Sam Reffsin, Emily Shea +10 more

Integrating mutational and nonmutational mechanisms of acquired therapy resistance within the Darwinian paradigm

Trends in cancer(2022)10.1016/j.trecan.2022.02.004

N/A

0DataRank · unranked

13 citations

Sydney M. Shaffer, Andriy Marusyk, Robert Vander Velde

Disrupting cellular memory to overcome drug resistance

Nature Communications(2023)10.1038/s41467-023-41811-8

N/A

0DataRank · unranked

53 citations

Raúl A. Reyes Hueros, Dylan L. Schaff, Benjamin Emert, Michael Saint-Antoine, Laura C. Kim +9 more