Hari Shroff

Also affiliated with Marine Biological Laboratory, Howard Hughes Medical Institute, Janelia Research Campus

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 48 papers. Top paper: “Three-dimensional structured illumination microscopy with enhanced axial resolution”.

Three-dimensional structured illumination microscopy with enhanced axial resolution

Nature Biotechnology(2023)10.1038/s41587-022-01651-1

N/A

0.723DataRank · unranked

123 citations

Yicong Wu, Yijun Su, Ivan Rey‐Suarez, Claudia Matthaeus, Taylor B. Updegrove +17 more

Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy

Nature Communications(2025)10.1038/s41467-024-55267-x

N/A

0.587DataRank · unranked

49 citations

Yicong Wu, Chad M. Hobson, Yijun Su, Shuhao Qian, Eric Krueger +21 more

WASP family proteins regulate the mobility of the B cell receptor during signaling activation

Nature Communications(2020)10.1038/s41467-020-14335-8

N/A

0.574DataRank · unranked

45 citations

Brittany A. Wheatley, Peter K. Koo, Anshuman Bhanja, Zhou Shu, S. G. J. Mochrie +4 more

Zebrafish Posterior Lateral Line primordium migration requires interactions between a superficial sheath of motile cells and the skin

eLife(2020)10.7554/elife.58251

N/A

0.553DataRank · unranked

39 citations

Naveen Natesh, Harshad D. Vishwasrao, Hari Shroff, Ajay Chitnis, Damian E. Dalle Nogare

A polymer index-matched to water enables diverse applications in fluorescence microscopy

Lab on a Chip(2021)10.1039/d0lc01233e

N/A

0.524DataRank · unranked

32 citations

Yijun Su, Hamilton White, Kate M. O’Neill, Nicole Y. Morgan, Ryan Christensen +13 more

Pupal behavior emerges from unstructured muscle activity in response to neuromodulation in Drosophila

eLife(2021)10.7554/elife.68656

N/A

0.522DataRank · unranked

13 citations

Adama Berndt, Matthew Houpert, Snehashis Roy, Robert L. Scott, Carson C. Chow +3 more

Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.27.270439

N/A

0.515DataRank · unranked

30 citations

Hideki Sasaki, Hoyin Lai, Yijun Su, Jiamin Liu, Yicong Wu +13 more

Experimental and theoretical model for the origin of coiling of cellular protrusions around fibers

Nature Communications(2023)10.1038/s41467-023-41273-y

N/A

0.385DataRank · unranked

12 citations

Christian Hernandez-Padilla, Yael Eshed Eisenbach, Samo Penič, Lixia Zhang, Harshad D. Vishwasrao +8 more

Structural and developmental principles of neuropil assembly in C. elegans

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.15.992222

N/A

0.241DataRank · unranked

4 citations

Kristopher M Barnes, Manik Kuchroo, Alex Gonopolskiy, Leighton H. Duncan, Titas Sengupta +14 more

Three-dimensional spatio-angular fluorescence microscopy with a polarized dual-view inverted selective-plane illumination microscope (pol-diSPIM)

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.09.584243

N/A

0.208DataRank · unranked

3 citations

Min Guo, Yijun Su, Jiji Chen, Yicong Wu, Junyu Liu +13 more

Phase diversity-based wavefront sensing for fluorescence microscopy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.19.572369

N/A

0.165DataRank · unranked

2 citations

Min Guo, Magdalena C. Schneider, Yijun Su, Satya Khuon, Nikolaj Reiser +4 more

Single-molecule fluorescence microscopy reveals regulatory mechanisms of MYO7A-driven cargo transport in stereocilia of live inner ear hair cells

Nature Communications(2025)10.1038/s41467-025-63102-0

N/A

0.104DataRank · unranked

1 citations

Harshad D. Vishwasrao, Inna A. Belyantseva, Junko Miyoshi, Mrudhula Sajeevadathan, Yasuko Ishibashi +5 more

Signaling through polymerization and degradation: Analysis and simulations of T cell activation mediated by Bcl10

PLoS Computational Biology(2021)10.1371/journal.pcbi.1007986

N/A

0DataRank · unranked

6 citations

Maria Traver, Hari Shroff, Brian C. Schaefer, Wolfgang Losert, Leonard Campanello

Behavior emerges from unstructured muscle activity in response to neuromodulation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434785

N/A

0DataRank · unranked

0 citations

Adama Berndt, Matthew Houpert, Snehashis Roy, Robert L. Scott, Carson C. Chow +3 more

Cytonemes coordinate asymmetric signaling and organization in the Drosophila muscle progenitor niche

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.29.466429

N/A

0DataRank · unranked

0 citations

Yicong Wu, Xiaofei Han, Yijun Su, Tim K. Maugel, Hari Shroff +2 more

Stereotyped Behavioral Maturation and Rhythmic Quiescence in C. elegans Embryos

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.09.471955

N/A

0DataRank · unranked

0 citations

Stephen Xu, Stephen Nurrish, Andrew Lauziere, Brandon J. Harvey, Joshua M. Kaplan +2 more

Incorporating the image formation process into deep learning improves network performance

Nature Methods(2022)10.1038/s41592-022-01652-7

N/A

0DataRank · unranked

120 citations

Yijun Su, Min Guo, Xiaofei Han, Jiamin Liu, Harshad D. Vishwasrao +13 more

Plasticity in structure and assembly of SARS-CoV-2 nucleocapsid protein

PNAS Nexus(2022)10.1093/pnasnexus/pgac049

N/A

0DataRank · unranked

75 citations

Ai Nguyen, Di Wu, Yan Li, Sergio A. Hassan, Jiji Chen +4 more

Cytonemes coordinate asymmetric signaling and organization in the Drosophila muscle progenitor niche

Nature Communications(2022)10.1038/s41467-022-28587-z

N/A

0DataRank · unranked

26 citations

Yicong Wu, Xiaofei Han, Yijun Su, Tim K. Maugel, Hari Shroff +2 more

Multiscale fluorescence imaging of living samples

Histochemistry and Cell Biology(2022)10.1007/s00418-022-02147-4

N/A

0DataRank · unranked

24 citations

Hari Shroff, Yicong Wu

Stereotyped behavioral maturation and rhythmic quiescence in C. elegans embryos

eLife(2022)10.7554/elife.76836

N/A

0DataRank · unranked

11 citations

Andrew Lauziere, Stephen Xu, Brandon J. Harvey, Ryan Christensen, Stephen Nurrish +3 more

Plasticity in structure and assembly of SARS-CoV-2 nucleocapsid protein

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.08.479556

N/A

0DataRank · unranked

12 citations

Ai Nguyen, Di Wu, Yan Li, Sergio A. Hassan, Jiji Chen +4 more

Label-free cleared tissue microscopy and machine learning for 3D histopathology of biomaterial implants

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.16.516791

N/A

0DataRank · unranked

2 citations

Sabrina DeStefano, Jiamin Liu, Yijun Su, Hari Shroff, Harshad D. Vishwasrao +2 more

An Exact Hypergraph Matching algorithm for posture identification in embryonic C. elegans

PLoS ONE(2022)10.1371/journal.pone.0277343

N/A

0DataRank · unranked

0 citations

Ryan Christensen, Hari Shroff, Radu Bălan, Andrew Lauziere

Label‐free cleared tissue microscopy and machine learning for 3D histopathology of biomaterial implants

Journal of Biomedical Materials Research Part A(2023)10.1002/jbm.a.37515

N/A

0DataRank · unranked

11 citations

Sabrina DeStefano, Jiamin Liu, Yijun Su, Hari Shroff, Harshad D. Vishwasrao +2 more

Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.15.562439

N/A

0DataRank · unranked

6 citations

Yicong Wu, Chad M. Hobson, Yijun Su, Shuhao Qian, Eric Krueger +21 more

Cell division machinery drives cell-specific gene activation during bacterial differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.10.552768

N/A

0DataRank · unranked

0 citations

Xuesong Li, Brandon R. Anjuwon-Foster, Sarah Clifford, Anna P. Brogan, Yijun Su +3 more

Convolutional neural network transformer (CNNT) for fluorescence microscopy image denoising with improved generalization and fast adaptation

Scientific Reports(2024)10.1038/s41598-024-68918-2

N/A

0DataRank · unranked

15 citations

Alexander S. Zhovmer, Ryo Sato, Yoh‐suke Mukouyama, Jiji Chen, Alberto Rissone +7 more

Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity

Science Advances(2024)10.1126/sciadv.adq0791

N/A

0DataRank · unranked

6 citations

Thomas Delerue, Vivek Anantharaman, Hyo Moon Cho, Carissa Chan, Thomas Nipper +10 more

Cell division machinery drives cell-specific gene activation during differentiation in Bacillus subtilis

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2400584121

N/A

0DataRank · unranked

9 citations

Xuesong Li, Brandon R. Anjuwon-Foster, Taylor B. Updegrove, Sarah Clifford, Anna P. Brogan +6 more

Live-cell imaging powered by computation

arXiv (Cornell University)(2024)10.48550/arxiv.2401.01438

N/A

0DataRank · unranked

0 citations

Ilaria Testa, Florian Jug, Suliana Manley, Hari Shroff

Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.27.587046

N/A

0DataRank · unranked

0 citations

Thomas Delerue, Vivek Anantharaman, Hyo Moon Cho, Carissa Chan, Thomas Nipper +10 more

Live-cell single-molecule fluorescence microscopy for protruding organelles reveals regulatory mechanisms of MYO7A-driven cargo transport in stereocilia of inner ear hair cells

Research Square(2024)10.21203/rs.3.rs-4369958/v1

N/A

0DataRank · unranked

0 citations

Harshad D. Vishwasrao, Inna A. Belyantseva, Mrudhula Sajeevadathan, Yasuko Ishibashi, Samuel Mawuli Adadey +4 more

Live imaging of the extracellular matrix with a glycan-binding fluorophore

Nature Methods(2025)10.1038/s41592-024-02590-2

N/A

0DataRank · unranked

21 citations

G. Yu, Jason J. Northey, Ronak Patel, Thomas A. Ravenscroft, Richard Ikegami +10 more

Volumetric imaging of the 3D orientation of cellular structures with a polarized fluorescence light-sheet microscope

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2406679122

N/A

0DataRank · unranked

6 citations

Min Guo, Yijun Su, Jiji Chen, Yicong Wu, Junyu Liu +13 more

Rapid image deconvolution and multiview fusion for optical microscopy

Nature Biotechnology(2020)10.1038/s41587-020-0560-x

N/A

0DataRank · unranked

200 citations

Yue Li, Yijun Su, Talley J. Lambert, Damian Dalle Nogare, Mark W. Moyle +24 more

Observing biological spatio-angular structures and dynamics with statistical image reconstruction and polarized fluorescence microscopy

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.23.678164

N/A

0DataRank · unranked

0 citations

Talon Chandler, Yue Li, Atharva Agashe, Mingzhe Wei, Yijun Su +16 more

Sequence-Independent Self-Assembly of Germ Granule mRNAs into Homotypic Clusters

Molecular Cell(2020)10.1016/j.molcel.2020.05.008

N/A

0DataRank · unranked

104 citations

Tyler E. Douglas, Markus Grosch, Yandong Yin, Whitby V.I. Eagle, Elizabeth R. Gavis +4 more

Quantitative live cell imaging reveals influenza virus manipulation of Rab11A transport through reduced dynein association

Nature Communications(2020)10.1038/s41467-019-13838-3

N/A

0DataRank · unranked

48 citations

Valerie Le Sage, Eric Nturibi, Katarzyna Kulej, Jennifer E. Jones, Min Guo +6 more

Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes

Research Square(2020)10.21203/rs.3.rs-68002/v1

N/A

0DataRank · unranked

12 citations

Hideki Sasaki, Hoyin Lai, Yijun Su, Jiamin Liu, Yicong Wu +12 more

Multicellular rosettes organize neuropil formation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.27.119750

N/A

0DataRank · unranked

3 citations

Anthony Santella, Kristopher M Barnes, Mark W. Moyle, Li Fan, Ryan Christensen +6 more

Spatio-angular fluorescence microscopy III. Constrained angular diffusion, polarized excitation, and high-NA imaging

Journal of the Optical Society of America A(2020)10.1364/josaa.389217

N/A

0DataRank · unranked

0 citations

Hari Shroff, Rudolf Oldenbourg, Patrick J. La Rivière, Talon Chandler

Signaling through polymerization and degradation: Analysis and simulations of T cell activation mediated by Bcl10

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.120907

N/A

0DataRank · unranked

0 citations

Maria Traver, Hari Shroff, Brian C. Schaefer, Wolfgang Losert, Leonard Campanello

Multiview confocal super-resolution microscopy

Nature(2021)10.1038/s41586-021-04110-0

N/A

0DataRank · unranked

123 citations

Xiaofei Han, Yijun Su, Melissa Glidewell, Jonathan S. Daniels, Jiamin Liu +22 more

Structural and developmental principles of neuropil assembly in C. elegans

Nature(2021)10.1038/s41586-020-03169-5

N/A

0DataRank · unranked

104 citations

Kristopher M Barnes, Manik Kuchroo, Alex Gonopolskiy, Leighton H. Duncan, Titas Sengupta +14 more

Differential adhesion regulates neurite placement via a retrograde zippering mechanism

eLife(2021)10.7554/elife.71171

N/A

0DataRank · unranked

21 citations

Noelle L Koonce, Nabor Vázquez-Martínez, Mark W Moyle, Leighton H Duncan, Sarah E Emerson +10 more

Human deafness-associated variants alter the dynamics of key molecules in hair cell stereocilia F-actin cores

Human Genetics(2021)10.1007/s00439-021-02304-0

N/A

0DataRank · unranked

19 citations

Inna A. Belyantseva, Shin‐ichiro Kitajiri, Hiroki Miyajima, Shin‐ya Nishio, Shin‐ichi Usami +6 more

Semi-automated single-molecule microscopy screening of fast-dissociating specific antibodies directly from hybridoma cultures

Cell Reports(2021)10.1016/j.celrep.2021.108708

N/A

0DataRank · unranked

22 citations

Qianli Zhang, Takafumi Miyake, Shin Watanabe, Hiroe Ohnishi, Jiji Chen +9 more