🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Sophia Liu

Broad Institute

ORCID: 0000-0003-3614-9731

Also affiliated with University of Massachusetts Chan Medical School, Regeneron (United States), University of Washington, University of California, Irvine, University of Washington Medical Center, Ragon Institute of MGH, MIT and Harvard, University of California San Diego, Irvine University

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicineComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response”.

Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response

Immunity(2022)10.1016/j.immuni.2022.09.002
N/A
0.747DataRank · unranked
144 citations

J. Bryan Iorgulescu, Shuqiang Li, Mehdi Borji, Irving Barrera, Vignesh Shanmugam +11 more

RNA timestamps identify the age of single molecules in RNA sequencing

Nature Biotechnology(2020)10.1038/s41587-020-0704-z
N/A
0.614DataRank · unranked
59 citations

Linlin M. Chen, Sophia Liu, Ellen D. Zhong, Joseph R. Scherrer, Edward S. Boyden +2 more

Slide-tags: scalable, single-nucleus barcoding for multi-modal spatial genomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.01.535228
N/A
0.442DataRank · unranked
18 citations

Jackson A. Weir, Naeem Nadaf, Matthew Shabet, Vipin Kumar, Sandeep Kambhampati +12 more

Early whole-body mutant huntingtin lowering averts changes in proteins and lipids important for synapse function and white matter maintenance in the LacQ140 mouse model

Neurobiology of Disease(2023)10.1016/j.nbd.2023.106313
N/A
0.396DataRank · unranked
13 citations

Ellen Sapp, Adel Boudi, Sophia Liu, Connor Seeley, Deanna M. Marchionini +3 more

Physical confinement and phagocytic uptake induce persistent cell migration

Biology Open(2025)10.1242/bio.062021
N/A
0.208DataRank · unranked
3 citations

Sophia Liu, Jeremy D. Rotty, Summer G. Paulson

Recording the age of RNA with deamination

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.08.939983
N/A
0.208DataRank · unranked
3 citations

Linlin M. Chen, Sophia Liu, Ellen D. Zhong, Joseph R. Scherrer, Edward S. Boyden +2 more

TissueMosaic: Self-supervised learning of tissue representations enables differential spatial transcriptomics across samples

Cell Systems(2025)10.1016/j.cels.2025.101394
N/A
0.165DataRank · unranked
2 citations

Luca D’Alessio, Fedor Grab, Stephen J. Fleming, Sophia Liu, Ruth Raichur +3 more

Tissue architecture dynamics underlying immune development and decline in the thymus

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.28.662120
N/A
0.165DataRank · unranked
2 citations

Mirco Friedrich, Ruth Raichur, Dennis Gong, Niklas Kehl, Qiyu Gong +8 more

Physical confinement and phagocytic uptake induce directional migration

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.13.653701
N/A
0.120DataRank · unranked
1 citations

Sophia Liu, Jeremy D. Rotty, Summer G. Paulson

Craters on the melanoma surface facilitate tumor-immune interactions and demonstrate pathologic response to checkpoint blockade in humans

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613595
N/A
0.104DataRank · unranked
1 citations

Georgia L. Stirtz, Asaf Tal, Ajit J. Nirmal, N. Besson, Stephanie M. Jones +34 more

Early whole-body mutant huntingtin lowering averts changes in proteins and lipids important for synapse function and white matter maintenance in the LacQ140 mouse model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525697
N/A
0.104DataRank · unranked
1 citations

Ellen Sapp, Adel Boudi, Sophia Liu, Connor Seeley, Deanna M. Marchionini +3 more

Urolithin A provides cardioprotection and mitochondrial quality enhancement preclinically and improves human cardiovascular health biomarkers

iScience(2025)10.1016/j.isci.2025.111814
N/A
0DataRank · unranked
19 citations

Julie Faitg, Charlotte Tissot, Dimitris Konstantopoulos, Ross Laws, Guillaume Bourdier +9 more

CRATER tumor niches facilitate CD8+ T cell engagement and correspond with immunotherapy success

Cell(2025)10.1016/j.cell.2025.09.021
N/A
0DataRank · unranked
11 citations

Georgia L. Stirtz, Asaf Tal, Ajit J. Nirmal, Kathleen L. Pfaff, Michael P. Manos +39 more

The Actin Cytoskeleton Responds to Inflammatory Cues and Alters Macrophage Activation

Cells(2022)10.3390/cells11111806
N/A
0DataRank · unranked
43 citations

Alexander J. Laurenson, Rohini Manickam, Sophia Liu, Imelda M. Saintilma, Dillon C. Schrock +3 more

Notch1 signaling determines the plasticity and function of fibroblasts in diabetic wounds

Life Science Alliance(2020)10.26508/lsa.202000769
N/A
0DataRank · unranked
32 citations

Yan Li, Irena Pastar, Min Xiao, Rochelle Prokupets, Sophia Liu +6 more