Ivan Anishchenko

ORCID: 0000-0003-3645-2044

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 17 papers. Top paper: “De novo design of luciferases using deep learning”.

De novo design of luciferases using deep learning

Nature(2023)10.1038/s41586-023-05696-3

N/A

7.4DataRank · unranked

460 citations

Christoffer Norn, Yakov Kipnis, Doug Tischer, Samuel J. Pellock, Declan Evans +13 more

Accurate prediction of protein structures and interactions using a three-track neural network

Science(2021)10.1126/science.abj8754

N/A

1.3DataRank · unranked

5820 citations

Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee +27 more

Improved protein structure prediction using predicted interresidue orientations

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1914677117

N/A

1.1DataRank · unranked

1572 citations

Ivan Anishchenko, Hahnbeom Park, Zhenling Peng, Sergey Ovchinnikov, David Baker +1 more

De novo protein design by deep network hallucination

Nature(2021)10.1038/s41586-021-04184-w

N/A

0.964DataRank · unranked

617 citations

Samuel J. Pellock, Tamuka M. Chidyausiku, Theresa A. Ramelot, Sergey Ovchinnikov, Jingzhou Hao +10 more

Scaffolding protein functional sites using deep learning

Science(2022)10.1126/science.abn2100

N/A

0.926DataRank · unranked

478 citations

Sidney Lisanza, David Juergens, Doug Tischer, Joseph L. Watson, Karla M. Castro +19 more

Robust deep learning based protein sequence design using ProteinMPNN

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494563

N/A

0.717DataRank · unranked

118 citations

Ivan Anishchenko, Nathaniel R. Bennett, Hua Bai, Robert J. Ragotte, Lukas F. Milles +17 more

Design of proteins presenting discontinuous functional sites using deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.29.402743

N/A

0.553DataRank · unranked

39 citations

Sidney Lisanza, Jue Wang, Runze Dong, Ivan Anishchenko, Lukas F. Milles +3 more

Protein sequence design by explicit energy landscape optimization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.218917

N/A

0.520DataRank · unranked

31 citations

Basile I. M. Wicky, David Juergens, Sirui Liu, David E. Kim, Brian Koepnick +5 more

Binding and sensing diverse small molecules using shape-complementary pseudocycles

Science(2024)10.1126/science.adn3780

N/A

0DataRank · unranked

85 citations

Meerit Y. Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee +20 more

Essential and virulence-related protein interactions of pathogens revealed through deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.12.589144

N/A

0DataRank · unranked

2 citations

Jing Zhang, Minkyung Baek, Yaxi Wang, Aditya Krishnakumar, Jimin Pei +10 more

Protein sequence design by conformational landscape optimization

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2017228118

N/A

0DataRank · unranked

153 citations

Basile I. M. Wicky, David Juergens, Sirui Liu, David E. Kim, Doug Tischer +95 more

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

Scientific Reports(2021)10.1038/s41598-021-83730-y

N/A

0DataRank · unranked

33 citations

Sandhya Subramanian, David E. Kim, Michael Murphy, Deleah Pettie, Lauren Carter +20 more

Deep learning methods for designing proteins scaffolding functional sites

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.10.468128

N/A

0DataRank · unranked

36 citations

Sidney Lisanza, David Juergens, Doug Tischer, Ivan Anishchenko, Minkyung Baek +10 more

Structures of core eukaryotic protein complexes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.30.462231

N/A

0DataRank · unranked

15 citations

Jimin Pei, Minkyung Baek, Aditya Krishnakumar, Ivan Anishchenko, Sergey Ovchinnikov +22 more

Robust deep learning–based protein sequence design using ProteinMPNN

Science(2022)10.1126/science.add2187

N/A

0DataRank · unranked

1912 citations

Ivan Anishchenko, Nathaniel R. Bennett, Hua Bai, Robert J. Ragotte, Lukas F. Milles +17 more

Generalized Biomolecular Modeling and Design with RoseTTAFold All-Atom

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.09.561603

N/A

0DataRank · unranked

110 citations

Jue Wang, Woody Ahern, Pascal Sturmfels, Preetham Venkatesh, Indrek Kalvet +14 more

De novo design of diverse small molecule binders and sensors using Shape Complementary Pseudocycles

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.20.572602

N/A

0DataRank · unranked

14 citations

Meerit Y. Said, Long Tran, Sagardip Majumder, Inna Goreshnik, Gyu Rie Lee +20 more