Hongzhe Li

Also affiliated with Wenzhou Medical University, Affiliated Eye Hospital of Wenzhou Medical College, Xingtai People's Hospital, National Clinical Research, Institute for Medical Informatics and Biostatistics, University of Pennsylvania, Philadelphia University

Biochemistry, Genetics and Molecular BiologyMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Additional file 8: of The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites

Figshare(2019)10.6084/m9.figshare.9692051

Top 100%

0DataRank

Top 100%0 citations

Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng +11 more

Papers

Driven by 53 papers — median percentile 0. Top paper: “Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes”.

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

Science(2011)10.1126/science.1208344

N/A

1.3DataRank · unranked

6514 citations

Jun Chen, Christian Hoffmann, Kyle Bittinger, Ying-Yu Chen, Sue A. Keilbaugh +14 more

Treatment consistent with idiopathic multicentric Castleman disease guidelines is associated with improved outcomes

Blood Advances(2023)10.1182/bloodadvances.2023010745

N/A

0.993DataRank · unranked

30 citations

Megan S. Lim, Gordan Srkalović, Joshua D. Brandstadter, Mateo Sarmiento Bustamante, Saishravan Shyamsundar +11 more

Unraveling the epigenetic code: human kidney DNA methylation and chromatin dynamics in renal disease development

Nature Communications(2024)10.1038/s41467-024-45295-y

N/A

0.970DataRank · unranked

37 citations

Hongbo Liu, Amin Abedini, Xin Sheng, Matthew Palmer, Hongzhe Li +2 more

Role of dietary fiber in the recovery of the human gut microbiome and its metabolome

Cell Host & Microbe(2021)10.1016/j.chom.2020.12.012

N/A

0.863DataRank · unranked

315 citations

Kyle Bittinger, Yuan Gao, Elliot S. Friedman, Lisa Nessel, Unmesha Roy Paladhi +11 more

Transfer Learning for High-Dimensional Linear Regression: Prediction, Estimation and Minimax Optimality

Journal of the Royal Statistical Society Series B (Statistical Methodology)(2021)10.1111/rssb.12479

N/A

0.776DataRank · unranked

176 citations

Tommaso Cai, Hongzhe Li, Sai Li

Mitochondrial dysfunction in inflammatory bowel disease alters intestinal epithelial metabolism of hepatic acylcarnitines

Journal of Clinical Investigation(2020)10.1172/jci133371

N/A

0.688DataRank · unranked

97 citations

Sayaka Ogawa, Lillian Chau, Kelly A. Whelan, Kathryn E. Hamilton, Jie Chen +18 more

The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites

Virology Journal(2019)10.1186/s12985-019-1211-z

N/A

0.630DataRank · unranked

13 citations

Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng +11 more

Proteomics of CKD progression in the chronic renal insufficiency cohort

Nature Communications(2023)10.1038/s41467-023-41642-7

N/A

0.614DataRank · unranked

59 citations

Rajat Deo, Yue Ren, J. Wang, Zihe Zheng, Haochang Shou +19 more

The relationship between the gut microbiome and the risk of respiratory infections among newborns

Communications Medicine(2022)10.1038/s43856-022-00152-1

N/A

0.483DataRank · unranked

24 citations

Jiang Gui, Anne G. Hoen, Hilary G. Morrison, Emily Baker, Kari C. Nadeau +5 more

The intestinal microbiome of inflammatory bowel disease across the pediatric age range

Gut Microbes(2024)10.1080/19490976.2024.2317932

N/A

0.470DataRank · unranked

22 citations

Kyle Bittinger, Yue Ren, Kelly Kachelries, J.M. Guerra Vales, Hongzhe Li +6 more

A Zero-Inflated Latent Dirichlet Allocation Model for Microbiome Studies

Frontiers in Genetics(2021)10.3389/fgene.2020.602594

N/A

0.470DataRank · unranked

22 citations

Hongzhe Li, Rebecca A. Deek

The genetic and evolutionary basis of gene expression variation in East Africans

Genome biology(2023)10.1186/s13059-023-02874-4

N/A

0.434DataRank · unranked

17 citations

Shweta Ramdas, Rong Ma, Renata Rawlings-Goss, Gregory R. Grant, Alessia Ranciaro +12 more

Recent advances in deep learning and language models for studying the microbiome

Frontiers in Genetics(2025)10.3389/fgene.2024.1494474

N/A

0.373DataRank · unranked

11 citations

Yunbi Nam, Lingyao Li, Rebecca A. Deek, Hongzhe Li, Siyuan Ma +1 more

Correction: A Novel Neutralizing Antibody Specific to the DE Loop of VP1 Can Inhibit EV-D68 Infection in Mice

The Journal of Immunology(2019)10.4049/jimmunol.1801658

N/A

0.365DataRank · unranked

3 citations

Jingjing Wang, Bingxiang Li, Lei Guo, Alexandra P. Lewis, Jie Song +21 more

Increased reflux secondary bile acids are associated with changes to the microbiome and transcriptome in Barrett’s esophagus

Gut Microbes(2025)10.1080/19490976.2025.2545420

N/A

0.346DataRank · unranked

8 citations

Yun Li, Gary W. Falk, Gregory G. Ginsberg, Kenneth K. Wang, Prasad G. Iyer +13 more

Testing in Microbiome-Profiling Studies with MiRKAT, the Microbiome Regression-Based Kernel Association Test

UNC Libraries(2020)10.17615/xwgx-9y24

N/A

0.345DataRank · unranked

9 citations

Tamar Ringel‐Kulka, Michael P. Epstein, Hua Zhou, Michael C. Wu, Jun Chen +5 more

The Genetic and Evolutionary Basis of Gene Expression Variation in East Africans

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.16.480765

N/A

0.241DataRank · unranked

4 citations

Shweta Ramdas, Rong Ma, Renata Rawlings-Goss, Gregory R. Grant, Alessia Ranciaro +12 more

Information content of high-order associations of the human gut microbiota network

The Annals of Applied Statistics(2021)10.1214/21-aoas1449

N/A

0.165DataRank · unranked

2 citations

Juliette C. Madan, Hongzhe Li, MARGARET R. KARAGAS, Anne G. Hoen, Weston D. Viles

Risk factors for mortality in patients with kidney failure on hemodialysis identified by proteomic analysis of CRIC and PACE studies

Nature Communications(2025)10.1038/s41467-025-66763-z

N/A

0.165DataRank · unranked

2 citations

Mark R. Segal, Tariq Shafi, Alexander R. Pico, Min‐Gyoung Shin, Michela Traglia +26 more

Deep Learning to Predict the Biosynthetic Gene Clusters in Bacterial Genomes

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167597

N/A

0DataRank · unranked

39 citations

Yun Li, Hongzhe Li, Mingyang Liu

The Lung Allograft Microbiome Associates with Pepsin, Inflammation, and Primary Graft Dysfunction

American Journal of Respiratory and Critical Care Medicine(2022)10.1164/rccm.202112-2786oc

N/A

0DataRank · unranked

28 citations

Samantha A. Whiteside, Rebecca A. Deek, Áurea Simón‐Soro, Jevon Graham-Wooten, M. Oyster +8 more

IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses

Journal of the American Statistical Association(2020)10.1080/01621459.2020.1860770

N/A

0DataRank · unranked

5 citations

Lü Tian, A. James O’Malley, MARGARET R. KARAGAS, Anne G. Hoen, Brock C. Christensen +6 more

The Macronutrient Composition of Infant Formula Produces Differences in Gut Microbiota Maturation That Associate with Weight Gain Velocity and Weight Status

Nutrients(2022)10.3390/nu14061241

N/A

0DataRank · unranked

17 citations

Yun Li, Kyle Bittinger, Elliot S. Friedman, Chunyu Zhao, Hongzhe Li +3 more

Two-sample tests for multivariate repeated measurements of histogram objects with applications to wearable device data

The Annals of Applied Statistics(2022)10.1214/21-aoas1596

N/A

0DataRank · unranked

5 citations

Kathleen R. Merikangas, Hongzhe Li, Haochang Shou, Jingru Zhang

Mixture Margin Random-effects Copula Models for Inferring Temporally Conserved Microbial Co-variation Networks from Longitudinal Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489333

N/A

0DataRank · unranked

0 citations

Hongzhe Li, Rebecca A. Deek

Maternal gut microbiota reflecting poor diet quality is associated with spontaneous preterm birth in a prospective cohort study

American Journal of Clinical Nutrition(2020)10.1093/ajcn/nqaa361

N/A

0DataRank · unranked

42 citations

Yun Li, Michal A. Elovitz, Hongzhe Li, Gary D. Wu, Charlene Compher +1 more

Estimation and Inference for High-Dimensional Generalized Linear Models with Knowledge Transfer

Journal of the American Statistical Association(2023)10.1080/01621459.2023.2184373

N/A

0DataRank · unranked

48 citations

Linjun Zhang, Tommaso Cai, Hongzhe Li, Sai Li

Proteomic cardiovascular risk assessment in chronic kidney disease

European Heart Journal(2023)10.1093/eurheartj/ehad115

N/A

0DataRank · unranked

48 citations

Ruth F. Dubin, Yue Ren, Ashwin Murthy, J. Wang, Haotian Zheng +18 more

Hypothesis testing for phylogenetic composition: a minimum-cost flow perspective

Biometrika(2020)10.1093/biomet/asaa061

N/A

0DataRank · unranked

10 citations

Tommaso Cai, Hongzhe Li, Shulei Wang

Inference of microbial covariation networks using copula models with mixture margins

Bioinformatics(2023)10.1093/bioinformatics/btad413

N/A

0DataRank · unranked

7 citations

Hongzhe Li, Rebecca A. Deek

A Regression-Based Approach to Robust Estimation and Inference for Genetic Covariance

Journal of the American Statistical Association(2023)10.1080/01621459.2023.2261669

N/A

0DataRank · unranked

3 citations

Sai Li, Hongzhe Li, J. Wang

Phylogenetic association analysis with conditional rank correlation

Biometrika(2023)10.1093/biomet/asad075

N/A

0DataRank · unranked

2 citations

Bo Yuan, Tommaso Cai, Hongzhe Li, Shulei Wang

Transfer Learning with Random Coefficient Ridge Regression

arXiv (Cornell University)(2023)10.48550/arxiv.2306.15915

N/A

0DataRank · unranked

2 citations

Hongzhe Li, Hongzhe Zhang

HT-MMIOW: A Hypothesis Test approach for Microbiome Mediation using Inverse Odds Weighting

arXiv (Cornell University)(2023)10.48550/arxiv.2301.02331

N/A

0DataRank · unranked

0 citations

Zhigang Li, Juliette C. Madan, Hongzhe Li, MARGARET R. KARAGAS, Jiang Gui +1 more

Data from Chromosomal Instability and Copy Number Alterations in Barrett's Esophagus and Esophageal Adenocarcinoma

(2023)10.1158/1078-0432.c.6516837

N/A

0DataRank · unranked

0 citations

Carlo C. Maley, Xiaohong Li, Hongzhe Li, Carissa A. Sanchez, Dennis L. Chao +5 more

MiRKAT: kernel machine regression-based global association tests for the microbiome

Bioinformatics(2020)10.1093/bioinformatics/btaa951

N/A

0DataRank · unranked

62 citations

Ni Zhao, Xiang Zhan, Hyunwook Koh, Weijia Fu, Jun Chen +4 more

Statistical and computational methods for integrating microbiome, host genomics, and metabolomics data

eLife(2024)10.7554/elife.88956

N/A

0DataRank · unranked

23 citations

Siyuan Ma, James M. Lewis, Hongzhe Li, Rebecca A. Deek

Emerging Priorities for Microbiome Research

Frontiers in Microbiology(2020)10.3389/fmicb.2020.00136

N/A

0DataRank · unranked

195 citations

Kawalpreet K. Aneja, Sinem Beyhan, Clara E. Cho, Stephen Woloszynek, Matteo Convertino +14 more

Surgery for Crohn’s Disease Is Associated With a Dysbiotic Microbiome and Metabolome: Results From Two Prospective Cohorts

Cellular and Molecular Gastroenterology and Hepatology(2024)10.1016/j.jcmgh.2024.05.005

N/A

0DataRank · unranked

15 citations

Scott G. Daniel, Hongzhe Li, Fuhua Hao, Andrew D. Patterson, Aaron L. Hecht +65 more

Statistical Inference for High Dimensional Regression with Proxy Data

Statistica Sinica(2024)10.5705/ss.202023.0088

N/A

0DataRank · unranked

1 citations

T. Tony Cai, Hongzhe Li, Sai Li

An Empirical Bayes Regression for Multi-tissue Gene Expression Prediction

Statistica Sinica(2024)10.5705/ss.202023.0201

N/A

0DataRank · unranked

0 citations

Hongzhe Li, Fei Xue

Multicalibration for Modeling Censored Survival Data with Universal Adaptability

arXiv (Cornell University)(2024)10.48550/arxiv.2405.15948

N/A

0DataRank · unranked

0 citations

Hongzhe Li, Hanxuan Ye

Greater Fatigue and Reduced Neurocognitive Speed With Symptomatic Crohn’s Disease

Crohn s & Colitis 360(2024)10.1093/crocol/otae069

N/A

0DataRank · unranked

0 citations

Neilanjan Nandi, Shivali Berera, Helen Lee, Galen Leung, Chung Sang Tse +7 more

Additional file 8: of The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites

Figshare(2019)10.6084/m9.figshare.9692051

Top 100%

0DataRank

Top 100%0 citations

Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng +11 more

Additional file 5: of The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites

Figshare(2019)10.6084/m9.figshare.9692027

N/A

0DataRank · unranked

0 citations

Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng +11 more

Relationship Between Timing of Hemodialysis and Procedure-Related Complications Following Endoscopy in Patients with End-Stage Renal Disease

Digestive Diseases and Sciences(2025)10.1007/s10620-025-09155-z

N/A

0DataRank · unranked

2 citations

Basavana Goudra, David Devaro, Natalie Schanzer, Christian Bogardus, Yue Ren +4 more

RCANE: a deep learning algorithm for whole-genome pan-cancer somatic copy number aberration prediction using RNA-seq data

Communications Biology(2025)10.1038/s42003-025-08712-6

N/A

0DataRank · unranked

0 citations

Zhongyi Hu, Lin Zhang, Hongzhe Li, Changhao Ge

Lung transplant for CF: Low lung bacterial burden and immune mediators in year one associate with CLAD development

Journal of Cystic Fibrosis(2025)10.1016/j.jcf.2025.10.002

N/A

0DataRank · unranked

0 citations

John E. McGinniss, Rebecca A. Deek, Carter Merenstein, Noel Britton, Áurea Simón‐Soro +15 more

Estimation of Heterogeneous Restricted Mean Survival Time Using Random Forest

Frontiers in Genetics(2021)10.3389/fgene.2020.587378

N/A

0DataRank · unranked

6 citations

Hongzhe Li, Mingyang Liu

Supplementary Figure 1 from Antitumor Activity of a Small-Molecule Inhibitor of Human Silent Information Regulator 2 Enzymes

10.1158/0008-5472.22366719

N/A

0DataRank · unranked

0 citations

Tonibelle Gatbonton, Aaron D. Schuler, Jeff Posakony, Hongzhe Li, Sondra Goehle +6 more

Hypothesis Testing in High-Dimensional Instrumental Variables Regression With an Application to Genomics Data

Statistica Sinica(2021)10.5705/ss.202019.0408

N/A

0DataRank · unranked

1 citations

Hongzhe Li, Jiarui Lu

Truncated Rank-Based Tests for Two-Part Models with Excessive Zeros and Applications to Microbiome Data

arXiv (Cornell University)(2021)10.48550/arxiv.2110.05368

N/A

0DataRank · unranked

2 citations

Eric Z. Chen, Hongzhe Li, Wanjie Wang

Transfer Learning in Large-Scale Gaussian Graphical Models with False Discovery Rate Control

Journal of the American Statistical Association(2022)10.1080/01621459.2022.2044333

N/A

0DataRank · unranked

57 citations

Tommaso Cai, Hongzhe Li, Sai Li

Hongzhe Li

Indexed papers

Top data-sharing exemplar

Papers