Lu Bai

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 24 papers. Top paper: “Transcription factor condensates, 3D clustering, and gene expression enhancement of the MET regulon”.

Transcription factor condensates, 3D clustering, and gene expression enhancement of the MET regulon

eLife(2024)10.7554/elife.96028

N/A

0.385DataRank · unranked

7 citations

Leman Simpson, Yi Li, Samuel Becker, Fan Zou, Xin Zhang +2 more

Systematic Dissection of Sequence Features Affecting the Binding Specificity of a Pioneer Factor Reveals Binding Synergy Between FOXA1 and AP-1

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.08.566246

N/A

0.241DataRank · unranked

4 citations

Holly Kleinschmidt, Jianyu Yang, Erik M. Leith, Jenna K. Johnson, Song Tan +3 more

Chemically Induced Chromosomal Interaction (CICI): A New Tool to Study Chromosome Dynamics and Its Biological Roles

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.01.892448

N/A

0DataRank · unranked

2 citations

Fan Zou, Yujie Yan, Lu Bai, Manyu Du

Ash1 and Tup1 Dependent Repression of the Saccharomyces cerevisiae HO promoter Requires Activator-Dependent Nucleosome Eviction

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.29.318063

N/A

0DataRank · unranked

0 citations

Timothy J. Parnell, Chao Yan, Lu Bai, David J. Stillman, Emily J. Parnell

Thermodynamic modeling of genome-wide nucleosome depleted regions in yeast

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008560

N/A

0DataRank · unranked

17 citations

Lu Bai, Hungyo Kharerin

Nucleosome-directed replication origin licensing independent of a consensus DNA sequence

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.17.456647

N/A

0DataRank · unranked

4 citations

Michael Wasserman, Olga Yurieva, Lu Bai, Michael E. O’Donnell, Shixin Liu +1 more

Partitioned usage of chromatin remodelers by nucleosome-displacing factors

Cell Reports(2022)10.1016/j.celrep.2022.111250

N/A

0DataRank · unranked

34 citations

Hungyo Kharerin, Archana Dhasarathy, Michael P. Kladde, Lu Bai, Hengye Chen

Nucleosome-directed replication origin licensing independent of a consensus DNA sequence

Nature Communications(2022)10.1038/s41467-022-32657-7

N/A

0DataRank · unranked

27 citations

Michael Wasserman, Olga Yurieva, Lu Bai, Michael E. O’Donnell, Shixin Liu +1 more

Chemically Induced Chromosomal Interaction (CICI) method to study chromosome dynamics and its biological roles

Nature Communications(2022)10.1038/s41467-022-28416-3

N/A

0DataRank · unranked

12 citations

Fan Zou, Yi Li, Yujie Yan, Lu Bai, Manyu Du

Mechanisms underlying WNT-mediated priming of human embryonic stem cells

Development(2022)10.1242/dev.200335

N/A

0DataRank · unranked

16 citations

Lu Bai, Ali H. Brivanlou, Eric D. Siggia, Anna Yoney

Predicting nucleosome positioning using statistical equilibrium models in budding yeast

STAR Protocols(2022)10.1016/j.xpro.2022.101926

N/A

0DataRank · unranked

2 citations

Lu Bai, Hungyo Kharerin

Basic helix-loop-helix pioneer factors interact with the histone octamer to invade nucleosomes and generate nucleosome depleted regions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.17.484790

N/A

0DataRank · unranked

3 citations

Hengye Chen, Priit Eek, Zhiyuan Meng, Caroline Jipa, Song Tan +3 more

Basic helix-loop-helix pioneer factors interact with the histone octamer to invade nucleosomes and generate nucleosome-depleted regions

Molecular Cell(2023)10.1016/j.molcel.2023.03.006

N/A

0DataRank · unranked

61 citations

Hengye Chen, Priit Eek, Zhiyuan Meng, Caroline Jipa, Song Tan +3 more

Investigating pioneer factor activity and its coordination with chromatin remodelers using integrated synthetic oligo assay

STAR Protocols(2023)10.1016/j.xpro.2023.102279

N/A

0DataRank · unranked

3 citations

Chao Yan, Archana Dhasarathy, Michael P. Kladde, Lu Bai, Hengye Chen

Using Synthetic DNA Libraries to Investigate Chromatin and Gene Regulation

Chromosoma(2023)10.1007/s00412-023-00796-5

N/A

0DataRank · unranked

2 citations

Cheng Xu, Lu Bai, Holly Kleinschmidt

Pioneer factors: nature or nurture?

Critical Reviews in Biochemistry and Molecular Biology(2024)10.1080/10409238.2024.2355885

N/A

0DataRank · unranked

16 citations

Holly Godin, Cheng‐Jian Xu, Lu Bai, Shane D Stoeber

DNA methylation-based high-resolution mapping of long-distance chromosomal interactions in nucleosome-depleted regions

Nature Communications(2024)10.1038/s41467-024-48718-y

N/A

0DataRank · unranked

14 citations

James Lee, Lu Bai, Yi Li

Transcription Factor Condensates Mediate Clustering of MET Regulon and Enhancement in Gene Expression

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.06.579062

N/A

0DataRank · unranked

5 citations

Leman Simpson, Yi Li, Samuel Becker, Fan Zou, Xin Zhang +2 more

Transcription Factor Condensates Mediate Clustering of MET Regulon and Enhancement in Gene Expression

eLife(2024)10.7554/elife.96028.2

N/A

0DataRank · unranked

1 citations

Leman Simpson, Yi Li, Samuel Becker, Fan Zou, Xin Zhang +2 more

Reviewer #1 (Public Review): Transcription Factor Condensates Mediate Clustering of MET Regulon and Enhancement in Gene Expression

(2024)10.7554/elife.96028.1.sa2

N/A

0DataRank · unranked

0 citations

Leman Simpson, Yi Li, Samuel Becker, Fan Zou, Xin Zhang +2 more

Native nucleosome-positioning elements as alternatives to the 601 sequence for nucleosome repositioning studies

Nucleic Acids Research(2025)10.1093/nar/gkaf822

N/A

0DataRank · unranked

4 citations

Shane D Stoeber, Ilana M. Nodelman, Hengye Chen, Wenxuan Yang, Gregory D. Bowman +3 more

A Role for Mediator Core in Limiting Coactivator Recruitment in Saccharomyces cerevisiae

Genetics(2020)10.1534/genetics.120.303254

N/A

0DataRank · unranked

10 citations

Yaxin Yu, Chao Yan, Lu Bai, David J. Stillman, Robert M. Yarrington

Condensin Accelerates Long-Range Intra-Chromosomal Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.02.651983

N/A

0DataRank · unranked

3 citations

Yi Li, Timothy Földes, Henrik Dahl Pinholt, Courtney Smith, Leonid A. Mirny +2 more

Ash1 and Tup1 dependent repression of the Saccharomyces cerevisiae HO promoter requires activator-dependent nucleosome eviction

PLoS Genetics(2020)10.1371/journal.pgen.1009133

N/A

0DataRank · unranked

5 citations

Timothy J. Parnell, Chao Yan, Lu Bai, David J. Stillman, Emily J. Parnell