Carlos F. Lopez

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 22 papers. Top paper: “Charting the Fragmented Landscape of Drug Synergy”.

Charting the Fragmented Landscape of Drug Synergy

Trends in Pharmacological Sciences(2020)10.1016/j.tips.2020.01.011

N/A

0.678DataRank · unranked

91 citations

David J. Wooten, Carlos F. Lopez, Vito Quaranta, Christian T. Meyer

Thunor: visualization and analysis of high-throughput dose–response datasets

Nucleic Acids Research(2021)10.1093/nar/gkab424

N/A

0.345DataRank · unranked

9 citations

Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez, Alexander L. R. Lubbock

Unified tumor growth mechanisms from multimodel inference and dataset integration

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011215

N/A

0.345DataRank · unranked

9 citations

Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez +1 more

Emergent signal execution modes in biochemical reaction networks calibrated to experimental data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.26.428266

N/A

0.208DataRank · unranked

3 citations

Mustafa Ozen, Blake A. Wilson, James C. Pino, Michael Irvin, Geena V. Ildefonso +3 more

A Roadmap for the Future of Systems Biology in Cancer Research

Cancer Research(2025)10.1158/0008-5472.can-25-0700

N/A

0.165DataRank · unranked

2 citations

Carlos F. Lopez, Andréi S. Rodin, Russell C. Rockne, Thomas E. Yankeelov, Herbert M Sauro +23 more

A dynamical low-rank approach to solve the chemical master equation for biological reaction networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.04.490585

N/A

0.104DataRank · unranked

1 citations

Lukas Einkemmer, Carlos F. Lopez, Martina Prugger

Unsupervised logic-based mechanism inference for network-driven biological processes

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009035

N/A

0DataRank · unranked

6 citations

Lukas Einkemmer, Samantha Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez +1 more

Processes in DNA damage response from a whole-cell multi-omics perspective

iScience(2022)10.1016/j.isci.2022.105341

N/A

0DataRank · unranked

9 citations

Alexander L. R. Lubbock, Leonard A. Harris, Danielle Gutierrez, Melissa A. Farrow, Nicole D. Muszynski +8 more

Unified Tumor Growth Mechanisms from Multimodel Inference and Dataset Integration

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.22.500696

N/A

0DataRank · unranked

2 citations

Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez +1 more

Integrated Multi-omics Analysis of Early Lung Adenocarcinoma Links Tumor Biological Features with Predicted Indolence or Aggressiveness

Cancer Research Communications(2023)10.1158/2767-9764.crc-22-0373

N/A

0DataRank · unranked

8 citations

Yong Zou, Khushbu Patel, Shilin Zhao, Alexis Coullomb, Dianna J. Rowe +7 more

A biochemical necroptosis model explains cell-type-specific responses to cell death cues

Biophysical Journal(2023)10.1016/j.bpj.2023.01.035

N/A

0DataRank · unranked

13 citations

Marie Oliver-Metzig, Alexander Hoffmann, Leonard A. Harris, Carlos F. Lopez, Geena V. Ildefonso

A dynamical low-rank approach to solve the chemical master equation for biological reaction networks

Journal of Computational Physics(2023)10.1016/j.jcp.2023.112250

N/A

0DataRank · unranked

9 citations

Lukas Einkemmer, Carlos F. Lopez, Martina Prugger

Model certainty in cellular network-driven processes with missing data

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011004

N/A

0DataRank · unranked

4 citations

Arvind Ramanathan, Carlos F. Lopez, Michael Irvin

A Probabilistic Approach to Explore Signal Execution Mechanisms With Limited Experimental Data

Frontiers in Genetics(2020)10.3389/fgene.2020.00686

N/A

0DataRank · unranked

0 citations

Carlos F. Lopez, Michael A. Kochen

Data-driven structural analysis of small cell lung cancer transcription factor network suggests potential subtype regulators and transition pathways

npj Systems Biology and Applications(2023)10.1038/s41540-023-00316-2

N/A

0DataRank · unranked

3 citations

Carlos F. Lopez, Mustafa Ozen

Data-driven structural analysis of Small Cell Lung Cancer transcription factor network suggests potential subtype regulators and transition pathways

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.01.535226

N/A

0DataRank · unranked

3 citations

Carlos F. Lopez, Mustafa Ozen

Automatic mechanistic inference from large families of Boolean models generated by Monte Carlo tree search

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1198359

N/A

0DataRank · unranked

0 citations

Jonathan Lifferth, Carlos F. Lopez, Bryan J. Glazer

Signal execution modes emerge in biochemical reaction networks calibrated to experimental data

iScience(2024)10.1016/j.isci.2024.109989

N/A

0DataRank · unranked

3 citations

Mustafa Ozen, Blake A. Wilson, James C. Pino, Michael Irvin, Geena V. Ildefonso +3 more

ACDC: Automated Cell Detection and Counting for Time-Lapse Fluorescence Microscopy.

Apollo (University of Cambridge)(2020)10.17863/cam.74749

N/A

0DataRank · unranked

0 citations

Andrea Tangherloni, Darren R. Tyson, Riccardo Betta, Militello, Carmelo, Simone Spolaor +8 more

Unsupervised logic-based mechanism inference for network-driven biological processes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.15.422874

N/A

0DataRank · unranked

0 citations

Lukas Einkemmer, Samantha Beik, Leonard A. Harris, Carlos F. Lopez, Martina Prugger

MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery

Nature Communications(2021)10.1038/s41467-021-24789-z

N/A

0DataRank · unranked

109 citations

Christian T. Meyer, Alexander L. R. Lubbock, Vito Quaranta, Carlos F. Lopez, David J. Wooten

Selective Inhibition of JAK1 Primes STAT5-Driven Human Leukemia Cells for ATRA-Induced Differentiation

Targeted Oncology(2021)10.1007/s11523-021-00830-5

N/A

0DataRank · unranked

3 citations

Kristy R. Stengel, James C. Pino, Gretchen Johnston, Merrida Childress, Agnieszka E. Gorska +15 more