Yinglong Miao

University of North Carolina at Chapel Hill

Biochemistry, Genetics and Molecular BiologyChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 61 papers. Top paper: “Structures of β1-adrenergic receptor in complex with Gs and ligands of different efficacies”.

Structures of β1-adrenergic receptor in complex with Gs and ligands of different efficacies

Nature Communications(2022)10.1038/s41467-022-31823-1

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0.970DataRank · unranked

34 citations

Navid Paknejad, Lan Zhu, Jinan Wang, Hung D. Nguyen, Yinglong Miao +4 more

Ligand Gaussian Accelerated Molecular Dynamics 2 (LiGaMD2): Improved Calculations of Ligand Binding Thermodynamics and Kinetics with Closed Protein Pocket

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.2c01194

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0.564DataRank · unranked

42 citations

Yinglong Miao, Jinan Wang

Pharmacological hallmarks of allostery at the M4 muscarinic receptor elucidated through structure and dynamics

eLife(2023)10.7554/elife.83477

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0.542DataRank · unranked

36 citations

Jinan Wang, Vi Pham, Jesse I. Mobbs, Matthew J. Belousoff, Apurba Bhattarai +19 more

Effects of presenilin-1 familial Alzheimer’s disease mutations on γ-secretase activation for cleavage of amyloid precursor protein

Communications Biology(2023)10.1038/s42003-023-04539-1

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0.505DataRank · unranked

28 citations

Sujan Devkota, Apurba Bhattarai, Michael S. Wolfe, Yinglong Miao, N. Hung

Ligand Gaussian Accelerated Molecular Dynamics 3 (LiGaMD3): Improved Calculations of Binding Thermodynamics and Kinetics of Both Small Molecules and Flexible Peptides

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00502

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0.494DataRank · unranked

26 citations

Yinglong Miao, Jinan Wang

Distinct binding conformations of epinephrine with α- and β-adrenergic receptors

Experimental & Molecular Medicine(2024)10.1038/s12276-024-01296-x

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0.360DataRank · unranked

10 citations

Minfei Su, Jinan Wang, N. Hung, Yinglong Miao, Xin‐Yun Huang +1 more

Characterization of natural product inhibitors of quorum sensing in Pseudomonas aeruginosa reveals competitive inhibition of RhlR by ortho -vanillin

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.24.581676

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0.208DataRank · unranked

3 citations

Sana Akhter, Blanca Rodríguez, Kade A. Townsend, N. Smith, Benjamin J. Smith +11 more

Mechanism of ligand recognition by human ACE2 receptor

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.30.362749

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0DataRank · unranked

2 citations

Shristi Pawnikar, Yinglong Miao, Apurba Bhattarai

Peptide Gaussian accelerated molecular dynamics (Pep-GaMD): Enhanced sampling and free energy and kinetics calculations of peptide binding

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.13.200774

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0DataRank · unranked

1 citations

Yinglong Miao, Jinan Wang

Gaussian accelerated molecular dynamics: Principles and applications

Wiley Interdisciplinary Reviews Computational Molecular Science(2021)10.1002/wcms.1521

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0DataRank · unranked

308 citations

Pablo Arantes, Apurba Bhattarai, Rohaine V. Hsu, Shristi Pawnikar, Yu‐ming M. Huang +3 more

Pathways and Mechanism of Caffeine Binding to Human Adenosine A2A Receptor

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.673170

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0DataRank · unranked

26 citations

Sana Akhter, Yinglong Miao, N. Hung

Efficient purification and assembly of ribonucleoprotein complex for interaction analysis by MST assay coupled with GaMD simulations

STAR Protocols(2021)10.1016/j.xpro.2021.100315

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0DataRank · unranked

4 citations

Dongdong Cao, Shristi Pawnikar, Sana Akhter, Yinglong Miao, Bo Liang +1 more

Mechanism of Tethered Agonist-Mediated Signaling by Polycystin-1

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.05.455255

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0DataRank · unranked

1 citations

Brenda S. Magenheimer, Ericka Nevarez Munoz, Robin L. Maser, Yinglong Miao, Shristi Pawnikar

Unique Features of Different Classes of G-Protein-Coupled Receptors Revealed from Sequence Coevolutionary and Structural Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.03.446974

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0DataRank · unranked

0 citations

Allan Haldane, Ronald M. Levy, Yinglong Miao, N. Hung

Protein-protein interaction-Gaussian accelerated molecular dynamics (PPI-GaMD): Characterization of protein binding thermodynamics and kinetics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.461974

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0DataRank · unranked

0 citations

Yinglong Miao, Jinan Wang

Mechanism of tethered agonist-mediated signaling by polycystin-1

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2113786119

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0DataRank · unranked

20 citations

Brenda S. Magenheimer, Ericka Nevarez Munoz, Robin L. Maser, Yinglong Miao, Shristi Pawnikar

Challenges and frontiers of computational modelling of biomolecular recognition

QRB Discovery(2022)10.1017/qrd.2022.11

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0DataRank · unranked

14 citations

Apurba Bhattarai, N. Hung, Yinglong Miao, Jinan Wang

Molecular Simulations and Drug Discovery of Adenosine Receptors

Molecules(2022)10.3390/molecules27072054

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0DataRank · unranked

13 citations

Apurba Bhattarai, N. Hung, Sana Akhter, Yinglong Miao, Jinan Wang

Mechanism of Peptide Agonist Binding in CXCR4 Chemokine Receptor

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.821055

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0DataRank · unranked

8 citations

Yinglong Miao, Shristi Pawnikar

Binding Analysis Using Accelerated Molecular Dynamics Simulations and Future Perspectives

Advances and Applications in Bioinformatics and Chemistry(2022)10.2147/aabc.s247950

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0DataRank · unranked

3 citations

Apurba Bhattarai, Jinan Wang, Yinglong Miao, Shristi Pawnikar

Ligand Gaussian accelerated molecular dynamics 2 (LiGaMD2): Improved calculations of ligand binding thermodynamics and kinetics with closed protein pocket

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.16.520748

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0DataRank · unranked

2 citations

Yinglong Miao, Jinan Wang

Pharmacological hallmarks of allostery at the M4 muscarinic receptor elucidated through structure and dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.27.509640

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0DataRank · unranked

1 citations

Jinan Wang, Vi Pham, Jesse I. Mobbs, Matthew J. Belousoff, Apurba Bhattarai +18 more

Effects of Presenilin-1 Familial Alzheimer’s Disease Mutations on γ-Secretase Activation for Cleavage of Amyloid Precursor Protein

Research Square(2022)10.21203/rs.3.rs-1910553/v1

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0DataRank · unranked

0 citations

Sujan Devkota, Apurba Bhattarai, Michael S. Wolfe, Yinglong Miao, Hung D. Nguyen

Review: Challenges and Frontiers of Computational Modeling of Biomolecular Recognition — R0/PR2

(2022)10.1017/qrd.2022.11.pr2

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0DataRank · unranked

0 citations

Apurba Bhattarai, N. Hung, Yinglong Miao, Jinan Wang

Predicting biomolecular binding kinetics: A review

arXiv (Cornell University)(2022)10.48550/arxiv.2211.02891

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0DataRank · unranked

0 citations

Hung N. Do, Kushal Koirala, Yinglong Miao, Jinan Wang

Predicting Biomolecular Binding Kinetics: A Review

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.2c01085

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0DataRank · unranked

71 citations

N. Hung, Kushal Koirala, Yinglong Miao, Jinan Wang

Deep Learning Dynamic Allostery of G-Protein-Coupled Receptors

JACS Au(2023)10.1021/jacsau.3c00503

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0DataRank · unranked

39 citations

Jinan Wang, Yinglong Miao, N. Hung

Structural basis of agonist specificity of α1A-adrenergic receptor

Nature Communications(2023)10.1038/s41467-023-40524-2

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0DataRank · unranked

17 citations

Jinan Wang, Guoqing Xiang, N. Hung, Joshua Levitz, Yinglong Miao +2 more

Deep Boosted Molecular Dynamics: Accelerating Molecular Simulations with Gaussian Boost Potentials Generated Using Probabilistic Bayesian Deep Neural Network

The Journal of Physical Chemistry Letters(2023)10.1021/acs.jpclett.3c00926

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0DataRank · unranked

12 citations

Yinglong Miao, N. Hung

Molecular Dynamics Activation of γ-Secretase for Cleavage of the Notch1 Substrate

ACS Chemical Neuroscience(2023)10.1021/acschemneuro.3c00594

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0DataRank · unranked

7 citations

Shweta R. Malvankar, Michael S. Wolfe, Yinglong Miao, N. Hung

Mechanistic Insights into Peptide Binding and Deactivation of an Adhesion G Protein-Coupled Receptor

Molecules(2023)10.3390/molecules29010164

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0DataRank · unranked

6 citations

Yinglong Miao, Victor A. Adediwura

Structural dynamics of chemokine receptors

Vitamins and hormones(2023)10.1016/bs.vh.2023.05.005

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0DataRank · unranked

2 citations

Sana Akhter, Yinglong Miao, Shristi Pawnikar

Deep Learning Dynamic Allostery of G-Protein-Coupled Receptors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.15.524128

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0DataRank · unranked

1 citations

Jinan Wang, Yinglong Miao, N. Hung

Deep Boosted Molecular Dynamics (DBMD): Accelerating molecular simulations with Gaussian boost potentials generated using probabilistic Bayesian deep neural network

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.25.534210

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0DataRank · unranked

0 citations

Yinglong Miao, N. Hung

Molecular Dynamics Activation of γ-Secretase for Cleavage of Notch1 Substrate

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.26.559539

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0DataRank · unranked

0 citations

Shweta R. Malvankar, Michael S. Wolfe, Yinglong Miao, N. Hung

Understanding the impact of binding free energy and kinetics calculations in modern drug discovery

Expert Opinion on Drug Discovery(2024)10.1080/17460441.2024.2349149

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0DataRank · unranked

42 citations

Kushal Koirala, N. Hung, Jinan Wang, Yinglong Miao, Victor A. Adediwura

Familial Alzheimer mutations stabilize synaptotoxic γ-secretase-substrate complexes

Cell Reports(2024)10.1016/j.celrep.2024.113761

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0DataRank · unranked

39 citations

Rui Zhou, Vaishnavi Nagarajan, Masato Maesako, N. Hung, Arshad Ali Noorani +9 more

Characterization of natural product inhibitors of quorum sensing reveals competitive inhibition of Pseudomonas aeruginosa RhlR by ortho -vanillin

Microbiology Spectrum(2024)10.1128/spectrum.00681-24

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0DataRank · unranked

21 citations

Sana Akhter, Blanca Rodriguez, Kade A. Townsend, N. Smith, Benjamin J. Smith +11 more

Emerging structures and dynamic mechanisms of γ-secretase for Alzheimer’s disease

Neural Regeneration Research(2024)10.4103/nrr.nrr-d-23-01781

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0DataRank · unranked

11 citations

Michael S. Wolfe, Yinglong Miao

Mechanism of Ligand Binding to Theophylline RNA Aptamer

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.3c01454

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0DataRank · unranked

5 citations

Zhichao Tang, Jinan Wang, Mercy Haboro, Erik D. Holmstrom, Jingxin Wang +2 more

Architecture and activation of single-pass transmembrane receptor guanylyl cyclase

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01426-z

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0DataRank · unranked

5 citations

Alexander Matthew Payne, Jinan Wang, Lan Zhu, Navid Paknejad, Edward T. Eng +5 more

Activation of polycystin-1 signaling by binding of stalk-derived peptide agonists

eLife(2024)10.7554/elife.95992

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0DataRank · unranked

10 citations

Brenda S. Magenheimer, Keya Joshi, Ericka Nevarez-Munoz, Allan Haldane, Robin L. Maser +2 more

Activation of Polycystin-1 Signaling by Binding of Stalk-derived Peptide Agonists

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.06.574465

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0DataRank · unranked

1 citations

Brenda S. Magenheimer, Keya Joshi, Ericka Nevarez Munoz, Allan Haldane, Robin L. Maser +2 more

Mechanisms of peptide agonist dissociation and deactivation of adhesion G-protein-coupled receptors

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.07.611823

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0DataRank · unranked

0 citations

Yinglong Miao, Keya Joshi

Activation of polycystin-1 signaling by binding of stalk-derived peptide agonists

eLife(2024)10.7554/elife.95992.3

N/A

0DataRank · unranked

0 citations

Brenda S. Magenheimer, Keya Joshi, Ericka Nevarez-Munoz, Allan Haldane, Robin L. Maser +2 more

Activation of polycystin-1 signaling by binding of stalk-derived peptide agonists

UNC Libraries(2024)10.17615/jsph-yt82

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0DataRank · unranked

0 citations

Brenda S. Magenheimer, Robin L. Maser, Keya Joshi, Shristi Pawnikar, Allan Haldane +2 more

Recent Developments in Amber Biomolecular Simulations

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c01063

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0DataRank · unranked

131 citations

David S. Cerutti, Vinícius Wilian D. Cruzeiro, Thomas A. Darden, Robert E. Duke, Mahdieh Ghazimirsaeed +26 more

Structure and function of a near fully-activated intermediate GPCR-Gαβγ complex

Nature Communications(2025)10.1038/s41467-025-56434-4

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0DataRank · unranked

12 citations

Xudong Wang, Jinan Wang, Jun Xu, Sun Wenkai, Victor A. Adediwura +4 more

Cryo-EM reveals an extrahelical allosteric binding site at the M5 mAChR

Nature Communications(2025)10.1038/s41467-025-62212-z

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0DataRank · unranked

5 citations

Jesse I. Mobbs, Bhavika Rana, Jinan Wang, Keya Joshi, Patrick R. Gentry +9 more

Dissociation kinetics of G proteins from G protein–coupled receptors and effects of allosteric modulation

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2512423122

N/A

0DataRank · unranked

3 citations

Thi Nguyen, Victor A. Adediwura, Cam Sinh Lu, Samantha M. McNeill, Manuela Jörg +5 more

Mechanisms of Peptide Agonist Dissociation and Deactivation of Adhesion G-Protein-Coupled Receptors

Biochemistry(2025)10.1021/acs.biochem.4c00531

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0DataRank · unranked

5 citations

Yinglong Miao, Keya Joshi

Mechanism of Tethered Agonist Binding to an Adhesion G-Protein-Coupled Receptor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.04.668378

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0DataRank · unranked

0 citations

Yinglong Miao, Keya Joshi

Architecture and activation of single-pass transmembrane receptor guanylyl cyclase

UNC Libraries(2025)10.17615/g7n8-av29

N/A

0DataRank · unranked

0 citations

Navid Paknejad, Xin‐Yun Huang, Edward T. Eng, Shian Liu, Jinan Wang +5 more

Peptide Gaussian accelerated molecular dynamics (Pep-GaMD): Enhanced sampling and free energy and kinetics calculations of peptide binding

The Journal of Chemical Physics(2020)10.1063/5.0021399

N/A

0DataRank · unranked

128 citations

Yinglong Miao, Jinan Wang

Mechanism of Tethered Agonist Binding to an Adhesion G-Protein-Coupled Receptor

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c05305

N/A

0DataRank · unranked

0 citations

Yinglong Miao, Keya Joshi

Identification and Validation of an Aspergillus nidulans Secondary Metabolite Derivative as an Inhibitor of the Musashi-RNA Interaction

Cancers(2020)10.3390/cancers12082221

N/A

0DataRank · unranked

22 citations

Jiajun Liu, Minli Xing, Amber R. Smith, Jinan Wang, Xiaoqing Wu +13 more

Retrospective ensemble docking of allosteric modulators in an adenosine G-protein-coupled receptor

Biochimica et Biophysica Acta (BBA) - General Subjects(2020)10.1016/j.bbagen.2020.129615

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0DataRank · unranked

17 citations

Jinan Wang, Yinglong Miao, Apurba Bhattarai

Mechanisms of γ-Secretase Activation and Substrate Processing

ACS Central Science(2020)10.1021/acscentsci.0c00296

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0DataRank · unranked

45 citations

Sujan Devkota, Sanjay Bhattarai, Michael S. Wolfe, Yinglong Miao, Apurba Bhattarai

Ligand Gaussian accelerated molecular dynamics (LiGaMD): Characterization of ligand binding thermodynamics and kinetics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.20.051979

N/A

0DataRank · unranked

4 citations

Apurba Bhattarai, Jinan Wang, Yinglong Miao

Mechanisms of γ-Secretase Activation and Substrate Processing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.09.984534

N/A

0DataRank · unranked

2 citations

Sujan Devkota, Sanjay Bhattarai, Michael S. Wolfe, Yinglong Miao, Apurba Bhattarai

Mechanism of RNA recognition by a Musashi RNA-binding protein

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.30.362756

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0DataRank · unranked

2 citations

Lan Lan, Xiaoqing Wu, Liang Xu, Yinglong Miao, Jinan Wang