Hanlee P. Ji

Also affiliated with Stanford Medicine, Stanford University

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

11.3Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

Papers

Driven by 67 papers — median percentile 42. Top paper: “The Human Pangenome Project: a global resource to map genomic diversity”.

The Human Pangenome Project: a global resource to map genomic diversity

Nature(2022)10.1038/s41586-022-04601-8

Top 4%

5.6DataRank

Top 4%571 citations

Lucinda Antonacci-Fulton, Thibaut Hourlier, Heather A. Lawson, Julian K. Lucas, Adam M. Phillippy +36 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x

Top 4%

5.1DataRank

Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w

N/A

5.0DataRank · unranked

318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y

N/A

2.1DataRank · unranked

114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Performance comparison of whole-genome sequencing platforms

Nature Biotechnology(2011)10.1038/nbt.2065

N/A

0.865DataRank · unranked

319 citations

Michael J. Clark, Rui Chen, Rong Chen, Georges Natsoulis, Maeve O'Huallachain +9 more

Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1 + Macrophages and Fibroblasts

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-22-2041

N/A

0.795DataRank · unranked

199 citations

Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai +9 more

Erratum: Corrigendum: Performance comparison of whole-genome sequencing platforms

Nature Biotechnology(2012)10.1038/nbt0612-562e

N/A

0.771DataRank · unranked

9 citations

Michael J. Clark, Rui Chen, Rong Chen, Georges Natsoulis, Maeve O'Huallachain +10 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y

N/A

0.710DataRank · unranked

113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

The COVID-19 XPRIZE and the need for scalable, fast, and widespread testing

Nature Biotechnology(2020)10.1038/s41587-020-0655-4

N/A

0.700DataRank · unranked

105 citations

Anna C. Hooker, Ebrahim Afshinnekoo, Marc Salit, Jason M. Kelly, Jonathan V. Feldstein +15 more

Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

Nature Biotechnology(2021)10.1038/s41587-021-00911-w

N/A

0.661DataRank · unranked

81 citations

Billy T. Lau, Heon Seok Kim, Anuja Sathe, Susan M. Grimes, Hanlee P. Ji +2 more

CRISPRpic: fast and precise analysis for CRISPR-induced mutations via p refixed i ndex c ounting

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa012

N/A

0.477DataRank · unranked

23 citations

Howard Y. Chang, Seung Woo Cho, Hanlee P. Ji, HoJoon Lee

Detection and analysis of complex structural variation in human genomes across populations and in brains of donors with psychiatric disorders

Cell(2024)10.1016/j.cell.2024.09.014

N/A

0.399DataRank · unranked

8 citations

Joseph G. Arthur, Hanmin Guo, Taeyoung Kim, Yi‐Ling Huang, Reenal Pattni +32 more

Predictive Model to Guide Brain Magnetic Resonance Imaging Surveillance in Patients With Metastatic Lung Cancer: Impact on Real-World Outcomes

JCO Precision Oncology(2022)10.1200/po.22.00220

N/A

0.360DataRank · unranked

10 citations

Victoria Y. Ding, Sophia Luo, Eunji Choi, Jessica Hellyer, Nathaniel Myall +10 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543

Top 50%

0.352DataRank

Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

medRxiv(2020)10.1101/2020.11.02.20224816

N/A

0.330DataRank · unranked

8 citations

Dmitri S. Pavlichin, Anna C. Hooker, Alison Almeda, Gi Won Shin, Jiamin Chen +6 more

Cancer subclone detection based on DNA copy number in single-cell and spatial omic sequencing data

Nature Methods(2025)10.1038/s41592-025-02773-5

N/A

0.312DataRank · unranked

7 citations

Jiazhen Rong, Anuja Sathe, Paul R. Hess, Billy T. Lau, Susan M. Grimes +4 more

A clinical trial of therapeutic vaccination in lymphoma with serial tumor sampling and single-cell analysis

Blood Advances(2023)10.1182/bloodadvances.2023011589

N/A

0.309DataRank · unranked

4 citations

Sarah Haebe, Debra K. Czerwinski, Erik Eckhert, Grady Day, Anuja Sathe +13 more

Resolving the 22q11.2 deletion using CTLR-Seq reveals chromosomal rearrangement mechanisms and individual variance in breakpoints

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2322834121

N/A

0.284DataRank · unranked

5 citations

Carolin Purmann, Hanmin Guo, Gi Won Shin, Yi‐Ling Huang, Reenal Pattni +12 more

Single cell and spatial alternative splicing analysis with long read sequencing

Research Square(2023)10.21203/rs.3.rs-2674892/v1

N/A

0.269DataRank · unranked

5 citations

Yuntian Fu, Heon Seok Kim, Jenea I. Adams, Susan M. Grimes, Sijia Huang +5 more

The Human Pangenome’s sequence conservation reveals a landscape of polymorphic structural variations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.06.511239

Top 66%

0.187DataRank

Top 66%2 citations

Stephanie Greer, Dmitri S. Pavlichin, Chris Hughes, Bo Zhou, Tsachy Weissman +2 more

Exploratory genomic analysis of high-grade neuroendocrine neoplasms across diverse primary sites

Endocrine Related Cancer(2022)10.1530/erc-22-0015

N/A

0DataRank · unranked

11 citations

Lan Zhao, Paul Van Hummelen, Brock A. Martin, Kathleen Hornbacker, HoJoon Lee +5 more

Germline variants of ATG7 in familial cholangiocarcinoma alter autophagy and p62

Scientific Reports(2022)10.1038/s41598-022-13569-4

N/A

0DataRank · unranked

13 citations

Jiamin Chen, Margrét H. Ögmundsdóttir, Carlos Ayala, Billy T. Lau, Richard Glenn C. Delacruz +12 more

KmerKeys: a web resource for searching indexed genome assemblies and variants

Nucleic Acids Research(2022)10.1093/nar/gkac266

N/A

0DataRank · unranked

5 citations

HoJoon Lee, Stephanie Greer, Susan M. Grimes, Tsachy Weissman, Hanlee P. Ji +1 more

Cancer subclone detection based on DNA copy number in single cell and spatial omic sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.05.498882

N/A

0DataRank · unranked

6 citations

Anuja Sathe, Jiazhen Rong, Paul R. Hess, Billy T. Lau, Susan M. Grimes +3 more

Single cell multi-omic mapping of subclonal architecture and pathway phenotype in primary gastric and metastatic colon cancers

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.03.498616

N/A

0DataRank · unranked

3 citations

Billy T. Lau, Susan M. Grimes, Anuja Sathe, Hanlee P. Ji, Xiangqi Bai

Distinct cell states define the developmental trajectories of mucinous appendiceal neoplasms towards pseudomyxoma metastases

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.26.493618

N/A

0DataRank · unranked

1 citations

Anuja Sathe, Xiangqi Bai, Susan M. Grimes, Jeanne Shen, George A. Poultsides +3 more

Cancer subclone detection based on DNA copy number in single cell and spatial omic sequencing data

Research Square(2022)10.21203/rs.3.rs-1838921/v1

N/A

0DataRank · unranked

1 citations

Chi-Yun Wu, Anuja Sathe, Jiazhen Rong, P. C. Hess, Billy T. Lau +3 more

Adaptive nanopore sequencing for single cell characterization of cancer mutations and gene rearrangements

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.22.517284

N/A

0DataRank · unranked

1 citations

Heon Seok Kim, Sharmili Roy, Anuja Sathe, Carlos Ayala, Alison F. Almeda-Notestine +6 more

The Gastric Cancer Registry: A Genomic Translational Resource for Multidisciplinary Research in Stomach Malignancies

medRxiv(2022)10.1101/2022.03.10.22271914

Top 100%

0DataRank

Top 100%0 citations

Susan M. Grimes, HoJoon Lee, Stephanie U Greer, Gi Won Shin, Madeline McNamara +14 more

The Gastric Cancer Registry: A Genomic Translational Resource for Multidisciplinary Research in Gastric Cancer

Cancer Epidemiology Biomarkers & Prevention(2022)10.1158/1055-9965.epi-22-0308

Top 100%

0DataRank

Top 100%0 citations

Susan M. Grimes, HoJoon Lee, Stephanie Greer, Gi Won Shin, Madeline McNamara +14 more

Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells

Nature Biotechnology(2023)10.1038/s41587-023-01949-8

N/A

0DataRank · unranked

28 citations

Susan M. Grimes, Tianqi Chen, Anuja Sathe, Billy T. Lau, Gue‐Ho Hwang +3 more

GITR and TIGIT immunotherapy provokes divergent multicellular responses in the tumor microenvironment of gastrointestinal cancers

Genome Medicine(2023)10.1186/s13073-023-01259-3

N/A

0DataRank · unranked

26 citations

Carlos Ayala, Xiangqi Bai, Susan M. Grimes, Byrne Lee, Cindy Kin +4 more

Follicular lymphoma evolves with a surmountable dependency on acquired glycosylation motifs in the B-cell receptor

Blood(2023)10.1182/blood.2023020360

N/A

0DataRank · unranked

12 citations

Grady Day, Debra K. Czerwinski, Anuja Sathe, Susan M. Grimes, Tianqi Chen +7 more

Single-cell multi-gene identification of somatic mutations and gene rearrangements in cancer

NAR Cancer(2023)10.1093/narcan/zcad034

N/A

0DataRank · unranked

6 citations

Heon Seok Kim, Sharmili Roy, Anuja Sathe, Carlos Ayala, Xiangqi Bai +7 more

GITR and TIGIT immunotherapy provokes divergent multi-cellular responses in the tumor microenvironment of gastrointestinal cancers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.13.532299

N/A

0DataRank · unranked

4 citations

Carlos Ayala, Xiangqi Bai, Susan M. Grimes, Byrne Lee, Cindy Kin +4 more

Data from Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts

(2023)10.1158/1078-0432.c.6532742

N/A

0DataRank · unranked

0 citations

Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai +9 more

Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Genome biology(2024)10.1186/s13059-023-03159-6

N/A

0DataRank · unranked

50 citations

Anuja Sathe, Paul R. Hess, Jiazhen Rong, Chi-Yun Wu, Emma E. Furth +5 more

Brain Metastases from Esophageal Cancer: A Retrospective Review from a Single Institution

World Neurosurgery(2024)10.1016/j.wneu.2024.09.085

N/A

0DataRank · unranked

1 citations

Guan Li, Jesse W. Tai, Adrian Rodrigues, Monica Granucci, Georgiana Burnside +5 more

The single-cell spatial landscape of stage III colorectal cancers

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.07.622577

N/A

0DataRank · unranked

1 citations

HoJoon Lee, Minh‐Phuong Tran, Richard Cruz, Anuja Sathe, Xiangqi Bai +11 more

CTLR-Seq Protocol v1

(2024)10.17504/protocols.io.q26g71d7kgwz/v1

N/A

0DataRank · unranked

0 citations

GiWon Shin, Yiling Huang, Raegan N. Wood, Hanlee P. Ji, Alexander E. Urban +1 more

Transcriptomic Analyses and Novel Organoid and Xenograft Modeling Reveals Potential Drug Sensitivities in a KRAS G12V-Mutant Colorectal Cancer Brain Metastasis

Research Square(2024)10.21203/rs.3.rs-5235115/v1

N/A

0DataRank · unranked

0 citations

Emon Nasajpour, Yao Lulu Xing, Alexa Gwyn, Daniella Morales, Suhani Chaudhary +17 more

The single-cell spatial landscape of stage III colorectal cancers

npj Precision Oncology(2025)10.1038/s41698-025-00853-5

N/A

0DataRank · unranked

10 citations

HoJoon Lee, Minh Tran, Richard Cruz, Anuja Sathe, Xiangqi Bai +11 more

Co-occurrence of clonally related follicular lymphoma and histiocytic sarcoma

Blood Cancer Journal(2025)10.1038/s41408-025-01335-4

N/A

0DataRank · unranked

2 citations

Debra K. Czerwinski, Anuja Sathe, Susan M. Grimes, Tianqi Chen, Carlos J. Suarez +5 more

Single-cell aneuploidy and chromosomal arm imbalances define subclones with divergent transcriptomic phenotypes

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqaf138

N/A

0DataRank · unranked

2 citations

Billy T. Lau, Anuja Sathe, Susan M. Grimes, Alison Almeda-Nostine, Hanlee P. Ji +1 more

Distinct gene signatures define the epithelial cell features of mucinous appendiceal neoplasms and pseudomyxoma metastases

Frontiers in Genetics(2025)10.3389/fgene.2025.1536982

N/A

0DataRank · unranked

3 citations

Anuja Sathe, Xiangqi Bai, Susan M. Grimes, Jeanne Shen, George A. Poultsides +3 more

Nanopore-based cell-free DNA fragmentation and methylation profiles from the cerebral spinal fluid of patients with lung cancer brain metastases

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.28.667300

N/A

0DataRank · unranked

0 citations

Xiangqi Bai, Georgiana Burnside, Thy Trinh, Melanie Hayden Gephart, Billy T. Lau +2 more

Colorectal cancer relies on an immunosuppressive cellular topography and genomic adaptations for establishing brain metastases

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.14.688538

N/A

0DataRank · unranked

0 citations

Mengrui Zhang, Xiangqi Bai, Ji In Kang, Rithika Meka, Huiyun Sun +13 more

Single cell and spatial alternative splicing analysis with Nanopore long read sequencing

Nature Communications(2025)10.1038/s41467-025-60902-2

N/A

0DataRank · unranked

20 citations

Heon Seok Kim, Sharmili Roy, Sijia Huang, Jenea I. Adams, Susan M. Grimes +5 more

Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa016

N/A

0DataRank · unranked

107 citations

Billy T. Lau, Claudia Catalanotti, Anuja Sathe, Matthew Kubit, Jiamin Chen +7 more

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

Genome Medicine(2020)10.1186/s13073-020-00747-0

N/A

0DataRank · unranked

67 citations

Alex Bishara, Eli L. Moss, Tkachenko Ei, Joyce B. Kang, Rebecca N. Culver +8 more

Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer

Scientific Reports(2020)10.1038/s41598-020-61643-6

N/A

0DataRank · unranked

14 citations

Paul Van Hummelen, Matthew Kubit, HoJoon Lee, John Bell, Susan M. Grimes +9 more

Unique k -mer sequences for validating cancer-related substitution, insertion and deletion mutations

NAR Cancer(2020)10.1093/narcan/zcaa034

N/A

0DataRank · unranked

10 citations

Ahmed Shuaibi, John Bell, Dmitri S. Pavlichin, Hanlee P. Ji, HoJoon Lee

Alleloscope: Integrative single cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

Research Square(2020)10.21203/rs.3.rs-98536/v1

N/A

0DataRank · unranked

5 citations

Billy T. Lau, Heon Seok Kim, Anuja Sathe, Susan M. Grimes, Hanlee P. Ji +2 more

Colorectal cancer metastases in the liver establish immunosuppressive spatial networking between tumor associated SPP1 + macrophages and fibroblasts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.01.273672

N/A

0DataRank · unranked

3 citations

Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai +9 more

Complete and haplotype-specific sequence assembly of segmental duplication-mediated genome rearrangements using CRISPR-targeted ultra-long read sequencing (CTLR-Seq)

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.23.349621

N/A

0DataRank · unranked

2 citations

Gi Won Shin, Stephanie Greer, Lisanne Vervoort, Yi‐Ling Huang, Reenal Pattni +6 more

Alleloscope: Integrative single cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.23.349407

N/A

0DataRank · unranked

2 citations

Billy T. Lau, Heon Seok Kim, Anuja Sathe, Susan M. Grimes, Hanlee P. Ji +2 more

Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.23.422767

N/A

0DataRank · unranked

1 citations

Stephanie Greer, Erik Hopmans, Susan M. Grimes, HoJoon Lee, Lan Zhao +6 more

Unique K-mer sequences for validating cancer-related substitution, insertion and deletion mutations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.20.163113

N/A

0DataRank · unranked

0 citations

Ahmed Shuaibi, John Bell, Dmitri S. Pavlichin, Hanlee P. Ji, HoJoon Lee

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

Genome Medicine(2021)10.1186/s13073-021-00882-2

N/A

0DataRank · unranked

30 citations

Dmitri S. Pavlichin, Anna C. Hooker, Alison Almeda, Gi Won Shin, Jiamin Chen +6 more

Characterization of the consensus mucosal microbiome of colorectal cancer

NAR Cancer(2021)10.1093/narcan/zcab049

N/A

0DataRank · unranked

21 citations

Susan M. Grimes, Stephanie Greer, Matthew Kubit, HoJoon Lee, Lincoln Nadauld +2 more

Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8

Genome Medicine(2021)10.1186/s13073-021-00958-z

N/A

0DataRank · unranked

14 citations

Stephanie Greer, Erik Hopmans, Susan M. Grimes, HoJoon Lee, Lan Zhao +6 more

Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing

Genome biology(2021)10.1186/s13059-021-02554-1

N/A

0DataRank · unranked

19 citations

Susan M. Grimes, Anna C. Hooker, Billy T. Lau, Hanlee P. Ji, Heon Seok Kim

A Deep Learning Model for Molecular Label Transfer that Enables Cancer Cell Identification from Histopathology Images

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.18.436004

N/A

0DataRank · unranked

4 citations

HoJoon Lee, Xiao Tan, Carlos J. Suarez, Noemi Andor, Quan Nguyen +2 more

Characterization of the consensus mucosal microbiome of colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.02.446807

N/A

0DataRank · unranked

3 citations

Susan M. Grimes, Stephanie Greer, Matthew Kubit, HoJoon Lee, Lincoln Nadauld +2 more

KmerKeys: a web resource for searching indexed genome assemblies and variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.17.444256

N/A

0DataRank · unranked

0 citations

HoJoon Lee, Stephanie Greer, Susan M. Grimes, Tsachy Weissman, Hanlee P. Ji +1 more

A deep learning model for molecular label transfer that enables cancer cell identification from histopathology images

npj Precision Oncology(2022)10.1038/s41698-022-00252-0

N/A

0DataRank · unranked

40 citations

HoJoon Lee, Xiao Tan, Carlos J. Suarez, Noemi Andor, Quan Nguyen +2 more

ALTEN: A High‐Fidelity Primary Tissue‐Engineering Platform to Assess Cellular Responses Ex Vivo

Advanced Science(2022)10.1002/advs.202103332

N/A

0DataRank · unranked

16 citations

Jiamin Chen, Yolanda Colino‐Sanguino, Laura Rodríguez de la Fuente, Guocheng Fang, Susan M. Grimes +20 more

Hanlee P. Ji

Indexed papers

Top data-sharing exemplar

Papers