🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Charlotte Soneson

SIB Swiss Institute of Bioinformatics

ORCID: 0000-0003-3833-2169

Also affiliated with Friedrich Miescher Institute, Friedrich Miescher Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 14 papers. Top paper: “monaLisa: an R/Bioconductor package for identifying regulatory motifs”.

monaLisa: an R/Bioconductor package for identifying regulatory motifs

Bioinformatics(2022)10.1093/bioinformatics/btac102
N/A
2.2DataRank · unranked
120 citations

Lukas Burger, Charlotte Soneson, Filippo M Rijli, Dirk Schübeler, Michael Stadler +1 more

Tximeta: Reference sequence checksums for provenance identification in RNA-seq

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007664
N/A
0.894DataRank · unranked
386 citations

Charlotte Soneson, Peter F. Hickey, Lisa K. Johnson, N. Tessa Pierce‐Ward, Lori Shepherd +3 more

mutscan—a flexible R package for efficient end-to-end analysis of multiplexed assays of variant effect data

Genome Biology(2023)10.1186/s13059-023-02967-0
N/A
0.477DataRank · unranked
23 citations

Alexandra M. Bendel, Guillaume Diss, Michael Stadler, Charlotte Soneson

Understanding and evaluating ambiguity in single-cell and single-nucleus RNA-sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522742
N/A
0.396DataRank · unranked
13 citations

Charlotte Soneson, Rob Patro, Dongze He

Learning and teaching biological data science in the Bioconductor community

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012925
N/A
0.241DataRank · unranked
4 citations

Frederick J. Tan, Fabricio Almeida‐Silva, Robert Castelo, Aedín C. Culhane, Sean Davis +13 more

Rbm8a deficiency causes hematopoietic defects by modulating Wnt/PCP signaling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.12.536513
N/A
0DataRank · unranked
2 citations

Elena Chiavacci, Charlotte Soneson, Harrison H. Wells, Kevin M. Méndez-Acevedo, Jacalyn S. MacGowan +10 more

Massively parallel quantification of substrate turnover defines protease subsite cooperativity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.17.567387
N/A
0DataRank · unranked
1 citations

Dimos Gaidatzis, Jan Seebacher, Sandra Muehlhaeusser, Georg Kempf, Simone Cavadini +4 more

DifferentialRegulation : a Bayesian hierarchical approach to identify differentially regulated genes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.17.553679
N/A
0DataRank · unranked
0 citations

Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar +4 more

DifferentialRegulation : a Bayesian hierarchical approach to identify differentially regulated genes

Biostatistics(2024)10.1093/biostatistics/kxae017
N/A
0DataRank · unranked
1 citations

Joël Meili, Peiying Cai, Charlotte Soneson, Dongze He, Hirak Sarkar +4 more

Rbm8a deficiency causes hematopoietic defects by modulating Wnt/PCP signaling

Developmental Biology(2025)10.1016/j.ydbio.2025.08.021
N/A
0DataRank · unranked
3 citations

Elena Chiavacci, Charlotte Soneson, Seth T. Jacobson, Emma N. Harrison, Kevin M. Méndez-Acevedo +11 more

ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R

F1000Research(2020)10.12688/f1000research.24187.2
N/A
0DataRank · unranked
1 citations

Fédérico Marini, Florian Geier, Michael I. Love, Michael Stadler, Charlotte Soneson

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008585
N/A
0DataRank · unranked
76 citations

Avi Srivastava, Rob Patro, Michael Stadler, Charlotte Soneson

ExploreModelMatrix: Interactive exploration for improved understanding of design matrices and linear models in R

F1000Research(2020)10.12688/f1000research.24187.1
N/A
0DataRank · unranked
2 citations

Fédérico Marini, Florian Geier, Michael I. Love, Michael Stadler, Charlotte Soneson

Alevin-fry unlocks rapid, accurate, and memory-frugal quantification of single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.29.450377
N/A
0DataRank · unranked
13 citations

Mohsen Zakeri, Hirak Sarkar, Charlotte Soneson, Avi Srivastava, Rob Patro +1 more