Brett S. Phinney

Also affiliated with Abterra Biosciences (United States), University of California, Davis

ChemistryMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 55 papers. Top paper: “Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells”.

Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells

eLife(2021)10.7554/elife.67624

N/A

1.3DataRank · unranked

46 citations

Jonathan R. Friedman, Marco Jost, Jiawei Xu, Justin Yamada, Martin Kampmann +6 more

Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100288

N/A

0.789DataRank · unranked

192 citations

Christopher M. Bartley, Ryan D. Chow, Thomas Ngo, Ruoyi Jiang, Colin R. Zamecnik +41 more

Age-Related Changes in Hair Shaft Protein Profiling and Genetically Variant Peptides

Forensic Science International Genetics(2020)10.1016/j.fsigen.2020.102309

N/A

0.483DataRank · unranked

24 citations

Noreen Karim, Blythe Durbin‐Johnson, Dionne P. Swift, R.S. Youngquist, Michelle Salemi +6 more

ATG9A facilitates the closure of mammalian autophagosomes

The Journal of Cell Biology(2024)10.1083/jcb.202404047

N/A

0.442DataRank · unranked

18 citations

Muriel Mari, Einar S Trosdal, Thabata Duque, Masroor Ahmad Paddar, Lee Allers +11 more

Comparative performance of two automated machine learning platforms for COVID-19 detection by MALDI-TOF-MS

PLoS ONE(2022)10.1371/journal.pone.0263954

N/A

0.373DataRank · unranked

11 citations

John V. Pepper, Taylor Howard, Karina Klein, Larissa May, Samer Albahra +4 more

Probe-dependent Proximity Profiling (ProPPr) Uncovers Similarities and Differences in Phospho-Tau-Associated Proteomes Between Tauopathies

Molecular Neurodegeneration(2025)10.1186/s13024-025-00817-0

N/A

0.373DataRank · unranked

11 citations

Melissa C. Wren, Feilin Liu, Naomi Kouri, Anastasiia Maistrenko, Bilal Khalil +9 more

Noncanonical roles of ATG5 and membrane atg8ylation in retromer assembly and function

eLife(2025)10.7554/elife.100928.3

N/A

0.302DataRank · unranked

6 citations

Fulong Wang, Einar S Trosdal, Emily Hendrix, Yi He, Michelle Salemi +7 more

Blood Proteome Profiling Reveals Biomarkers and Pathway Alterations in Fragile X PM at Risk for Developing FXTAS

International Journal of Molecular Sciences(2023)10.3390/ijms241713477

N/A

0.269DataRank · unranked

5 citations

Jie Li, Michelle Salemi, Brett S. Phinney, Blythe Durbin‐Johnson, Randi J. Hagerman +4 more

Noncanonical roles of ATG5 and membrane atg8ylation in retromer assembly and function

eLife(2024)10.7554/elife.100928

N/A

0.241DataRank · unranked

4 citations

Fulong Wang, Einar S Trosdal, Emily Hendrix, Yi He, Michelle Salemi +7 more

Use of shotgun immunoproteomics for the development of protein vaccines against Edwardsiella piscicida

Fish & Shellfish Immunology(2025)10.1016/j.fsi.2025.110992

N/A

0.104DataRank · unranked

1 citations

Matt J. Griffin, Brett S. Phinney, Michelle Salemi, Zeinab Yazdi, Sujita Balami +10 more

Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.16.431450

N/A

0.104DataRank · unranked

1 citations

Jonathan R. Friedman, Marco Jost, Jiawei Xu, Justin Yamada, Martin Kampmann +6 more

P2-HNF4α alters linoleic acid metabolism and mitigates soybean oil-induced obesity: role for oxylipins

Journal of Lipid Research(2025)10.1016/j.jlr.2025.100932

N/A

0.104DataRank · unranked

1 citations

Johannes F. Fahrmann, Dmitry Grapov, H. J. Yang, Jane R. Evans, Oliver Fiehn +4 more

A Secreted Chorismate Mutase from Xanthomonas arboricola pv. juglandis Attenuates Virulence and Walnut Blight Symptoms

International Journal of Molecular Sciences(2021)10.3390/ijms221910374

N/A

0DataRank · unranked

8 citations

Cíntia Helena Duarte Sagawa, Paulo A. Zaini, Houston J. Saxe, Phillip A. Wilmarth, Brett S. Phinney +4 more

Alternative LC-MS/MS Platforms and Data Acquisition Strategies for Proteomic Genotyping of Human Hair Shafts

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435505

N/A

0DataRank · unranked

1 citations

Kevin M. Legg, Michelle Salemi, Anthony W. Herren, Brett S. Phinney, Heather E. McKiernan +2 more

Interactomic analysis reveals a new homeostatic role for the HIV restriction factor TRIM5α in mitophagy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.20.457143

N/A

0DataRank · unranked

0 citations

Michelle Salemi, Geneva L. Williams, Michael L. Paffett, Brett S. Phinney, Michael A. Mandell +1 more

Stress granules and mTOR are regulated by membrane atg8ylation during lysosomal damage

The Journal of Cell Biology(2022)10.1083/jcb.202207091

N/A

0DataRank · unranked

94 citations

Fulong Wang, Zambarlal Bhujabal, Ryan Peters, Michal Mudd, Thabata Duque +8 more

Interactomic analysis reveals a homeostatic role for the HIV restriction factor TRIM5α in mitophagy

Cell Reports(2022)10.1016/j.celrep.2022.110797

N/A

0DataRank · unranked

17 citations

Michelle Salemi, Geneva L. Williams, Seeun Oh, Michael L. Paffett, Brett S. Phinney +2 more

Cell derived matrices from bovine corneal endothelial cells as a model to study cellular dysfunction

Experimental Eye Research(2022)10.1016/j.exer.2022.109303

N/A

0DataRank · unranked

7 citations

Santoshi Muppala, Maryam Ali, Johnathon D. Anderson, Brett S. Phinney, Michelle Salemi +5 more

Identification of Endogenous Peptides in Nasal Swab Transport Media used in MALDI-TOF-MS Based COVID-19 Screening

ACS Omega(2022)10.1021/acsomega.2c01864

N/A

0DataRank · unranked

5 citations

Brett S. Phinney, Gabriela Grigorean, Michelle Salemi, Hooman H. Rashidi, John V. Pepper +2 more

Membrane Atg8ylation, stress granule formation, and MTOR regulation during lysosomal damage

Autophagy(2022)10.1080/15548627.2022.2148900

N/A

0DataRank · unranked

25 citations

Fulong Wang, Zambarlal Bhujabal, Ryan Peters, Michal Mudd, Thabata Duque +8 more

ATG5 provides host protection acting as a switch in the atg8ylation cascade between autophagy and secretion

Developmental Cell(2023)10.1016/j.devcel.2023.03.014

N/A

0DataRank · unranked

52 citations

Ryan Peters, Jingyue Jia, Michal Mudd, Michelle Salemi, Lee Allers +7 more

Extracellular vesicles from mouse trophoblast cells: Effects on neural progenitor cells and potential participants in the placenta–brain axis

Biology of Reproduction(2023)10.1093/biolre/ioad146

N/A

0DataRank · unranked

20 citations

Arun S. Seetharam, Shrikesh Sachdev, Nathan J. Bivens, Brett S. Phinney, Gabriela Grigorean +4 more

The role of ATG5 beyond Atg8ylation and autophagy

Autophagy(2023)10.1080/15548627.2023.2273703

N/A

0DataRank · unranked

10 citations

Einar S Trosdal, Masroor Ahmad Paddar, Thabata Duque, Lee Allers, Michal Mudd +7 more

Mitochondrial and Proteasome Dysfunction Occurs in the Hearts of Mice Treated with Triazine Herbicide Prometryn

International Journal of Molecular Sciences(2023)10.3390/ijms242015266

N/A

0DataRank · unranked

4 citations

Brett S. Phinney, Michelle Salemi, Aldrin V. Gomes, Rasheed Sule

Protein profiling of forehead epidermal corneocytes distinguishes frontal fibrosing from androgenetic alopecia

PLoS ONE(2023)10.1371/journal.pone.0283619

N/A

0DataRank · unranked

2 citations

Paradi Mirmirani, Blythe Durbin‐Johnson, David M. Rocke, Michelle Salemi, Brett S. Phinney +2 more

2019 Association of Biomolecular Resource FacilitiesMulti-Laboratory Data-Independent Acquisition ProteomicsStudy

Journal of Biomolecular Techniques JBT(2023)10.7171/3fc1f5fe.9b78d780

N/A

0DataRank · unranked

1 citations

Paul M. Stemmer, Brian C. Searle, Laura E. Herring, LeRoy Martin, Mukul K. Midha +7 more

Comparison of the broncoalveolar lavage fluid proteomics between foals and adult horses

PLoS ONE(2023)10.1371/journal.pone.0290778

N/A

0DataRank · unranked

1 citations

Adina R. Bujold, Phillip A. Wilmarth, Brett S. Phinney, Joseph P. Navelski, David W. Horohov +2 more

Proteome Analysis of Walnut Bacterial Blight Disease

International Journal of Molecular Sciences(2020)10.3390/ijms21207453

N/A

0DataRank · unranked

19 citations

Renata Machado de Assis, Paulo A. Zaini, Phillip A. Wilmarth, Brett S. Phinney, Leandro Márcio Moreira +2 more

Outer membrane vesicles and the outer membrane protein OmpU govern Vibrio cholerae biofilm matrix assembly

mBio(2024)10.1128/mbio.03304-23

N/A

0DataRank · unranked

41 citations

W. Timothy Garvey, Peter Dahl, Shuaiqi Guo, Yunjie Chang, Carmen Schwechheimer +7 more

Calcium signaling from damaged lysosomes induces cytoprotective stress granules

The EMBO Journal(2024)10.1038/s44318-024-00292-1

N/A

0DataRank · unranked

26 citations

Jay E Salinas, Rui Ping Wheaton, Suttinee Poolsup, Lee Allers, Mónica Rosas‐Lemus +12 more

Proteostasis perturbation of N-Myc leveraging HSP70 mediated protein turnover improves treatment of neuroendocrine prostate cancer

Nature Communications(2024)10.1038/s41467-024-50459-x

N/A

0DataRank · unranked

10 citations

Joy C. Yang, Bo Chen, Shu Ning, Xiong Zhang, Leyi Wang +16 more

Liver Tissue Proteins Improve the Accuracy of Plasma Proteins as Biomarkers in Diagnosing Metabolic Dysfunction‐Associated Steatohepatitis

PROTEOMICS - CLINICAL APPLICATIONS(2024)10.1002/prca.202300236

N/A

0DataRank · unranked

8 citations

Michelle Salemi, Brett S. Phinney, Arthur J. McCullough, Achuthan Sourianarayanane

Temperature‐dependent alterations in the proteome of the emergent fish pathogen Edwardsiella piscicida

Journal of Fish Diseases(2024)10.1111/jfd.14017

N/A

0DataRank · unranked

8 citations

Matt J. Griffin, Brett S. Phinney, Michelle Salemi, Zeinab Yazdi, Sujita Balami +3 more

Hepatic Proteomic Changes Associated with Liver Injury Caused by Alcohol Consumption in Fpr2−/− Mice

International Journal of Molecular Sciences(2024)10.3390/ijms25189807

N/A

0DataRank · unranked

2 citations

Jeffrey Warner, Daniel W. Wilkey, Brett S. Phinney, Michelle Salemi, Michael L. Merchant +4 more

The balance between antiviral and antibacterial responses during M. tuberculosis infection is regulated by the ubiquitin ligase CBL

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.15.594178

N/A

0DataRank · unranked

4 citations

Kelsey Martin, Michelle Salemi, A. P. Ray, Brett S. Phinney, Bennett H. Penn +1 more

A mechanism that transduces lysosomal damage signals to stress granule formation for cell survival

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.29.587368

N/A

0DataRank · unranked

3 citations

Suttinee Poolsup, Lee Allers, Monica Rosas Lemus, Qiuying Cheng, Jing Pu +4 more

Probe-dependent Proximity Profiling (ProPPr) Uncovers Similarities and Differences in Phospho-Tau-Associated Proteomes Between Tauopathies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.25.585597

N/A

0DataRank · unranked

0 citations

Melissa C. Wren, Feilin Liu, Naomi Kouri, Anastasiia Maistrenko, Bilal Khalil +7 more

Human Keratinocyte Responses to Woodsmoke Chemicals

Chemical Research in Toxicology(2024)10.1021/acs.chemrestox.3c00353

N/A

0DataRank · unranked

0 citations

Yatian Yang, Michelle Salemi, Brett S. Phinney, Blythe Durbin‐Johnson, David M. Rocke +2 more

Noncanonical roles of ATG5 and membrane atg8ylation in retromer assembly and function

eLife(2024)10.7554/elife.100928.1

N/A

0DataRank · unranked

0 citations

Fulong Wang, Einar S Trosdal, Emily Hendrix, Yi He, Michelle Salemi +7 more

Proteomic Signatures of SARS-CoV-2 Susceptibility in Mexican Free-tailed Bats and Their Application to Viral Surveillance

Integrative and Comparative Biology(2025)10.1093/icb/icaf148

N/A

0DataRank · unranked

4 citations

Amanda Vicente‐Santos, Ariadna E. Morales, Kristin E Dyer, Beckett L. Olbrys, Lauren R. Lock +8 more

ATG16L1 controls mammalian vacuolar proton ATPase

The Journal of Cell Biology(2025)10.1083/jcb.202503166

N/A

0DataRank · unranked

2 citations

Masroor Ahmad Paddar, Einar S Trosdal, Ruheena Javed, Lee Allers, Michal Mudd +8 more

Specimen Inactivation Methods for Proteomics─Comparisons of Irradiation, Chemical, and Heat Treatments on Downstream Serum Analyses

Journal of Proteome Research(2025)10.1021/acs.jproteome.5c00290

N/A

0DataRank · unranked

1 citations

Nistara Randhawa, Gabriela Grigorean, Tracy L. Drazenovich, Brett S. Phinney, Koen K. A. Van Rompay +4 more

Acute in vivo proximity labeling for membrane targeted proteomics in neuronal circuits

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.04.691871

N/A

0DataRank · unranked

0 citations

Run Zhang, Melanie Robles, Kaden P. Adams, Michelle R. Salemi, Brett S. Phinney +9 more

Environmental pro-oxidants induce altered envelope protein profiles in human keratinocytes

Toxicological Sciences(2023)10.1093/toxsci/kfad103

N/A

0DataRank · unranked

1 citations

Blythe Durbin‐Johnson, David M. Rocke, Michelle Salemi, Brett S. Phinney, Robert H. Rice +1 more

Comparative Proteomic Analysis of Walnut (Juglans regia L.) Pellicle Tissues Reveals the Regulation of Nut Quality Attributes

Life(2020)10.3390/life10120314

N/A

0DataRank · unranked

18 citations

Noah G. Feinberg, Filipa S. Grilo, Houston J. Saxe, Michelle Salemi, Brett S. Phinney +3 more

Gender-specific changes in energy metabolism and protein degradation as major pathways affected in livers of mice treated with ibuprofen

Scientific Reports(2020)10.1038/s41598-020-60053-y

N/A

0DataRank · unranked

37 citations

Manish Mishra, Michelle Salemi, Brett S. Phinney, Joanne Newens, Aldrin V. Gomes +1 more

Optimal processing for proteomic genotyping of single human hairs

Forensic Science International Genetics(2020)10.1016/j.fsigen.2020.102314

N/A

0DataRank · unranked

32 citations

Michelle Salemi, Noreen Karim, Brett S. Phinney, Robert H. Rice, Glendon J. Parker +1 more

Deep Learning Neural Network Prediction Method Improves Proteome Profiling of Vascular Sap of Grapevines during Pierce’s Disease Development

Biology(2020)10.3390/biology9090261

N/A

0DataRank · unranked

3 citations

Paulo Zaini, Renata Machado de Assis, Houston J. Saxe, Michelle Salemi, Aaron Jacobson +4 more

MERIT, a cellular system coordinating lysosomal repair, removal and replacement

Autophagy(2020)10.1080/15548627.2020.1779451

N/A

0DataRank · unranked

36 citations

Aurore Claude‐Taupin, Yuexi Gu, Seong Won Choi, Ryan Peters, Bhawana Bissa +10 more

Deep learning neural network prediction method improves proteome profiling of vascular sap of grapevines during Pierce’s disease development

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.18.210153

N/A

0DataRank · unranked

2 citations

Paulo A. Zaini, Renata Machado de Assis, Houston J. Saxe, Michelle Salemi, Aaron Jacobson +3 more

Mammalian hybrid pre-autophagosomal structure HyPAS generates autophagosomes

Cell(2021)10.1016/j.cell.2021.10.017

N/A

0DataRank · unranked

104 citations

Ruheena Javed, Michal Mudd, Sandeep Pallikkuth, Keith A. Lidke, Ashish Jain +17 more

ATG9A protects the plasma membrane from programmed and incidental permeabilization

Nature Cell Biology(2021)10.1038/s41556-021-00706-w

N/A

0DataRank · unranked

94 citations

Jingyue Jia, Zambarlal Bhujabal, Meriem Garfa‐Traoré, Suresh Kumar, Gustavo Peixoto Duarte da Silva +19 more

Alternative LC–MS/MS Platforms and Data Acquisition Strategies for Proteomic Genotyping of Human Hair Shafts

Journal of Proteome Research(2021)10.1021/acs.jproteome.1c00209

N/A

0DataRank · unranked

10 citations

Kevin M. Legg, Michelle Salemi, Anthony W. Herren, Brett S. Phinney, Heather E. McKiernan +2 more

Elucidation of familial relationships using hair shaft proteomics

Forensic Science International Genetics(2021)10.1016/j.fsigen.2021.102564

N/A

0DataRank · unranked

10 citations

Tempest J. Plott, Blythe Durbin‐Johnson, David M. Rocke, Michelle Salemi, Brett S. Phinney +5 more

De Novo Arginine Synthesis Is Required for Full Virulence of Xanthomonas arboricola pv. juglandis During Walnut Bacterial Blight Disease

Phytopathology(2021)10.1094/phyto-07-21-0302-r

N/A

0DataRank · unranked

9 citations

Renata Machado de Assis, Paulo A. Zaini, Houston J. Saxe, Phillip A. Wilmarth, Michelle Salemi +3 more