Jeremy M. Simon

University of North Carolina at Chapel Hill

Also affiliated with Dana-Farber Cancer Institute

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 63 papers. Top paper: “The accessible chromatin landscape of the human genome”.

The accessible chromatin landscape of the human genome

Nature(2012)10.1038/nature11232

N/A

1.2DataRank · unranked

2882 citations

Eric Rynes, Richard Humbert, Jost Vielmetter, Matthew T. Maurano, Eric Haugen +57 more

RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

eLife(2023)10.7554/elife.85921

N/A

0.555DataRank · unranked

14 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +12 more

Spt6-Spn1 interaction is required for RNA polymerase II association and precise nucleosome positioning along transcribed genes

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108436

N/A

0.233DataRank · unranked

3 citations

Raghuvar Dronamraju, Whitney R. Smith-Kinnaman, Sarah A. Peck Justice, Austin J. Hepperla, Heather K. MacAlpine +5 more

Unique and Shared Roles for Histone H3K36 Methylation States in Transcription Regulation Functions

Cell Reports(2020)10.1016/j.celrep.2020.107751

N/A

0DataRank · unranked

72 citations

Travis Ptacek, Yi Wang, Bing Li, Jeremy M. Simon, Brian D. Strahl +1 more

Deletion of Topoisomerase 1 in excitatory neurons causes genomic instability and early onset neurodegeneration

Nature Communications(2020)10.1038/s41467-020-15794-9

N/A

0DataRank · unranked

40 citations

Angela M. Mabb, Bonnie Taylor‐Blake, Jesse K. Niehaus, William D. Chronister, Hanqian Mao +6 more

A small-molecule screen reveals novel modulators of MeCP2 and X-chromosome inactivation maintenance

Journal of Neurodevelopmental Disorders(2020)10.1186/s11689-020-09332-3

N/A

0DataRank · unranked

30 citations

M. Bram Kuijer, Nerea Ruiz Blanes, Ellen P. Clark, Megumi Aita, Lorena Galiano Arjona +7 more

A Role for Widely Interspaced Zinc Finger (WIZ) in Retention of the G9a Methyltransferase on Chromatin

Publisher(2020)10.17615/znve-zr25

N/A

0DataRank · unranked

0 citations

Ian J. Davis, Samantha G. Pattenden, Jeremy M. Simon, Scott B. Rothbart, Jian Jin +5 more

PTEN Deficiency Mediates a Reciprocal Response to IGFI and mTOR Inhibition

UNC Libraries(2020)10.17615/stk9-7e89

N/A

0DataRank · unranked

0 citations

Sam Wu, Scott V. Smith, Billie M. Moats‐Staats, Andrés Rojas, Ian J. Davis +6 more

Alterations to chromatin in intestinal macrophages link IL-10 deficiency to inappropriate inflammatory responses

UNC Libraries(2020)10.17615/d2rw-pb90

N/A

0DataRank · unranked

0 citations

Matthew R. Schaner, Mark J. Koruda, Dermot McGovern, Matthew Weiser, Karen L. Mohlke +11 more

Core pathway mutations induce de-differentiation of murine astrocytes into glioblastoma stem cells that are sensitive to radiation but resistant to temozolomide

UNC Libraries(2020)10.17615/nbwz-w133

N/A

0DataRank · unranked

0 citations

Ralf Schmid, Robert S. McNeill, Jing Wu, Matthew G. Ewend, Jeremy M. Simon +6 more

BRG1/SMARCA4 Inactivation Promotes Non-Small Cell Lung Cancer Aggressiveness by Altering Chromatin Organization

UNC Libraries(2020)10.17615/wmfk-e950

N/A

0DataRank · unranked

0 citations

Tess Orvis, D. Neil Hayes, Joel S. Parker, Jeremy M. Simon, Bernard E. Weissman +7 more

Widespread Chromatin Accessibility at Repetitive Elements Links Stem Cells with Human Cancer

UNC Libraries(2020)10.17615/9abx-nr85

N/A

0DataRank · unranked

0 citations

‎Raluca Dumitru, Nicholas C. Gomez, Austin J. Hepperla, Ian J. Davis, Jeremy M. Simon +1 more

A chemical tool for chemiprecipitation of the lysine methyltransferase, G9a, in vitro and in vivo

UNC Libraries(2020)10.17615/d4tj-7d15

N/A

0DataRank · unranked

0 citations

Fengling Li, Ian J. Davis, Jian Jin, Dalia Barsyte-Lovejoy, Feng Liu +4 more

LKB1 loss in melanoma disrupts directional migration toward extracellular matrix cues

Carolina Digital Repository (University of North Carolina at Chapel Hill)(2020)10.17615/nr0g-cg74

N/A

0DataRank · unranked

0 citations

Evan S. Dubose, Tao Bo, Shawn M. Gomez, James E. Bear, Wenjin Liu +7 more

High-throughput small molecule screen identifies inhibitors of aberrant chromatin accessibility

UNC Libraries(2020)10.17615/6ttq-fm15

N/A

0DataRank · unranked

0 citations

Cameron C. Wood, Joshua S. Wooten, Ian J. Davis, Aminah Wali, Andrew W. McFadden +6 more

Loss of Arp2/3 induces an NF-κB–dependent, nonautonomous effect on chemotactic signaling

UNC Libraries(2020)10.17615/n796-qd81

N/A

0DataRank · unranked

0 citations

James E. Bear, Gary L. Johnson, Jeremy M. Simon, Sreeja B. Asokan, Norman E. Sharpless +4 more

MicroRNA-29 is an essential regulator of brain maturation through regulation of CH methylation

Cell Reports(2021)10.1016/j.celrep.2021.108946

N/A

0DataRank · unranked

73 citations

Ayumi Nakamura, Émilie Hollville, Hume Stroud, Jeremy M. Simon, Travis Ptacek +15 more

The essential role of primary cilia in cerebral cortical development and disorders

Current topics in developmental biology/Current Topics in Developmental Biology(2021)10.1016/bs.ctdb.2020.11.003

N/A

0DataRank · unranked

65 citations

Mia X Trupiano, Jeremy M. Simon, Jiami Guo, E.S. Anton, Siling Liu

STING Suppresses Mitochondrial VDAC2 to Govern RCC Growth Independent of Innate Immunity

Advanced Science(2022)10.1002/advs.202203718

N/A

0DataRank · unranked

63 citations

Xin Zhou, Hongwei Du, Erica W. Cloer, Jiaming Zhang, Mei Liu +9 more

PBRM1 Inactivation Promotes Upregulation of Human Endogenous Retroviruses in a HIF-Dependent Manner

Cancer Immunology Research(2022)10.1158/2326-6066.cir-21-0480

N/A

0DataRank · unranked

26 citations

Janet Y. Leung, Kathryn H. Gessner, Austin J. Hepperla, Jeremy M. Simon, Ian J. Davis +2 more

BET Protein Inhibition Regulates Macrophage Chromatin Accessibility and Microbiota-Dependent Colitis

Frontiers in Immunology(2022)10.3389/fimmu.2022.856966

N/A

0DataRank · unranked

11 citations

Ana Berglind, Meaghan M. Kennedy Ng, Benjamin P. Keith, Zachary J. Lynch, Matthew R. Schaner +10 more

Depletion of HIV reservoir by activation of ISR signaling in resting CD4+ T cells

iScience(2022)10.1016/j.isci.2022.105743

N/A

0DataRank · unranked

9 citations

Lilly Wong, Yuyang Tang, Brigitte Allard, Katherine S. James, George R. Thompson +8 more

BET Protein Inhibition Regulates Macrophage Chromatin Accessibility and Microbiota-Dependent Colitis

UNC Libraries(2022)10.17615/a6d7-yz40

N/A

0DataRank · unranked

1 citations

Matthew R. Schaner, Omar K. Trad, Michelle Hoffner O apos Connor, Jeremy M. Simon, Zachary J. Lynch +10 more

A histone deacetylase network regulates epigenetic reprogramming and viral silencing in HIV infected cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.09.491199

N/A

0DataRank · unranked

7 citations

Catherine A. Lewis, Samuel D. Burgos, Manickam Ashokkumar, Yinyan Xu, Allison A Rowley +8 more

Basal forebrain cholinergic circuits orchestrate diverse cell types in the adult dentate gyrus to support neural stem cell function and spatial memory

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.25.493227

N/A

0DataRank · unranked

1 citations

Yijing Su, Jeremy M. Simon, Yan‐Jia Luo, Brent Asrican, Seth Tart +6 more

A TDP-43 acetylation-mimic mutation that disrupts RNA-binding drives FTLD-like neurodegeneration in a mouse model of sporadic TDP-43 proteinopathy

Research Square(2022)10.21203/rs.3.rs-2200020/v1

N/A

0DataRank · unranked

1 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +10 more

Autism-linked UBE3A gain-of-function mutation causes interneuron and behavioral phenotypes when inherited maternally or paternally in mice

Cell Reports(2023)10.1016/j.celrep.2023.112706

N/A

0DataRank · unranked

29 citations

Jeremy M. Simon, Travis Ptacek, Jason J. Yi, Lipin Loo, Hanqian Mao +6 more

A histone deacetylase network regulates epigenetic reprogramming and viral silencing in HIV-infected cells

Cell chemical biology(2023)10.1016/j.chembiol.2023.11.009

N/A

0DataRank · unranked

30 citations

Catherine A. Lewis, Samuel D. Burgos, Manickam Ashokkumar, Yinyan Xu, Allison A. Rowley +8 more

Distinct roles for canonical and variant histone H3 lysine-36 in Polycomb silencing

Science Advances(2023)10.1126/sciadv.adf2451

N/A

0DataRank · unranked

29 citations

Vasudha Vandadi, Yin Huang, John C. Brown, Sally A. Boerma, Mary Leatham‐Jensen +7 more

An EZH2-NF-κB regulatory axis drives expression of pro-oncogenic gene signatures in triple negative breast cancer

iScience(2023)10.1016/j.isci.2023.107115

N/A

0DataRank · unranked

24 citations

Jun Wang, Jeremy M. Simon, Gang Greg Wang, Albert S. Baldwin, Gabrielle Dardis

Gastrulation‐stage alcohol exposure induces similar rates of craniofacial malformations in male and female C57BL/6J mice

Birth Defects Research(2023)10.1002/bdr2.2292

N/A

0DataRank · unranked

6 citations

Constance J. Dragicevich, Eric W. Fish, Austin J. Hepperla, Jeremy M. Simon, Scott E. Parnell +1 more

Environmental carcinogens disproportionally mutate genes implicated in neurodevelopmental disorders

Frontiers in Neuroscience(2023)10.3389/fnins.2023.1106573

N/A

0DataRank · unranked

6 citations

Shaoyi Zhang, Jeremy M. Simon, Sarah M. McLarnan, Wendy K. Chung, Brandon L. Pearson +1 more

Heterogeneity in the progression of retinal pathologies in mice harboring patient mimicking Impg2 mutations

Human Molecular Genetics(2023)10.1093/hmg/ddad199

N/A

0DataRank · unranked

3 citations

Adam Draper, Patrick F. Lang, Tylor R. Lewis, Audrey L. Smith, Steven J. Mayerl +8 more

RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

eLife(2023)10.7554/elife.85921.2

N/A

0DataRank · unranked

3 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +12 more

RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

eLife(2023)10.7554/elife.85921.1

N/A

0DataRank · unranked

1 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +10 more

RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

Research Square(2023)10.21203/rs.3.rs-2200020/v2

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +10 more

RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

Research Square(2023)10.21203/rs.3.rs-2200020/v3

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +10 more

RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

UNC Libraries(2023)10.17615/x4kg-pe69

N/A

0DataRank · unranked

0 citations

Sara Nafees, Ping Wang, Youjun Chen, Adriana S. Beltrán, Kathryn M. Harper +10 more

Reviewer #3 (Public Review): RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

(2023)10.7554/elife.85921.1.sa0

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +10 more

Reviewer #2 (Public Review): RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

(2023)10.7554/elife.85921.1.sa1

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +10 more

Reviewer #1 (Public Review): RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

(2023)10.7554/elife.85921.1.sa2

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +10 more

RNA-binding deficient TDP-43 drives cognitive decline in a mouse model of TDP-43 proteinopathy

Research Square(2023)10.21203/rs.3.rs-2200020/v4

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Baggio Evangelista, Youjun Chen, Xu Tian, Sara Nafees +12 more

Regional and cellular organization of the autism-associated protein UBE3A/E6AP and its antisense transcript in the brain of the developing rhesus monkey

Frontiers in Neuroanatomy(2024)10.3389/fnana.2024.1410791

N/A

0DataRank · unranked

11 citations

Sarah G. Salvador, Ridthi Kartik Rekha Patel, Sarah M. Clark, Noah W. Miller, Lucas M. James +7 more

2′3′-cGAMP interactome identifies 2′3′-cGAMP/Rab18/FosB signaling in cell migration control independent of innate immunity

Science Advances(2024)10.1126/sciadv.ado7024

N/A

0DataRank · unranked

8 citations

Quentin Hahn, Le Yu, Zhichuan Zhu, Joshua A. Boyer, Jian Wang +18 more

The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice

G3 Genes Genomes Genetics(2024)10.1093/g3journal/jkae193

N/A

0DataRank · unranked

7 citations

John Sebastian Sigmon, Jennifer Brennan, Chidima Ahulamibe, Michelle E Allen, Sam Ardery +32 more

Early life exposure to vitamin D deficiency impairs molecular mechanisms that regulate liver cholesterol biosynthesis, energy metabolism, inflammation, and detoxification

Frontiers in Endocrinology(2024)10.3389/fendo.2024.1335855

N/A

0DataRank · unranked

5 citations

Jing Xue, Marwa Elnagheeb, Raad Z. Gharaibeh, Sarah A. Schoenrock, Susan McRitchie +8 more

A conditional mouse expressing an activating mutation in NRF2 displays hyperplasia of the upper gastrointestinal tract and decreased white adipose tissue

UNC Libraries(2024)10.17615/3353-sr90

N/A

0DataRank · unranked

3 citations

Travis Ptacek, Travis P. Schrank, Michael B. Major, Kathleen M. Mulvaney, Stephanie A. Montgomery +11 more

Novel Porcine Model Reveals Two Distinct LGR5 Cell Types during Lung Development and Homeostasis

American Journal of Respiratory Cell and Molecular Biology(2024)10.1165/rcmb.2024-0040oc

N/A

0DataRank · unranked

1 citations

Ross Lampe, Nithin Gupta, Yanet Murphy, Jae-Wook Chung, Amber Carter +10 more

The Updated Mouse Universal Genotyping Array Bioinformatic Pipeline Improves Genetic QC in Laboratory Mice

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582794

N/A

0DataRank · unranked

2 citations

John Sebastian Sigmon, Jennifer Brennan, Chidima Ahulamibe, Michelle E Allen, Ralph S. Baric +28 more

Alveolar macrophages play a key role in tolerance to ozone

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.18.580749

N/A

0DataRank · unranked

1 citations

Morgan Nalesnik, Robert M. Immormino, Jeremy M. Simon, Jack R. Harkema, Jason R. Mock +3 more

Early life exposure to vitamin D deficiency impairs molecular mechanisms that regulate liver cholesterol biosynthesis, energy metabolism, inflammation, and detoxification

UNC Libraries(2024)10.17615/z251-ay82

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Folami Ideraabdullah, Cory Brouwer, Sumner, Susan J., Lisa M. Tarantino +8 more

Regional and cellular organization of the autism-associated protein UBE3A/E6AP and its antisense transcript in the brain of the developing rhesus monkey

UNC Libraries(2024)10.17615/rzva-3k50

N/A

0DataRank · unranked

0 citations

Nicholas W. Ringelberg, A Burette, David G. Amaral, Sarah M. Clark, Sarah G. Salvador +7 more

PBRM1 Inactivation Promotes Upregulation of Human Endogenous Retroviruses in a HIF-Dependent Manner

UNC Libraries(2024)10.17615/6eyn-vg19

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Janet Y. Leung, William Y. Kim, Austin J. Hepperla, Kathryn H. Gessner +2 more

The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice

UNC Libraries(2024)10.17615/vjs1-0445

N/A

0DataRank · unranked

0 citations

Kelsey E. Noll, David Truong Nguyen, Megan K. Proulx, Marta C Cruz Cisneros, Pablo Hock +32 more

An EZH2-NF-κB regulatory axis drives expression of pro-oncogenic gene signatures in triple negative breast cancer

UNC Libraries(2024)10.17615/vrqh-4z70

N/A

0DataRank · unranked

0 citations

Jun Wang, Gang Greg Wang, Albert S. Baldwin, Jeremy M. Simon, Gabrielle J Dardis

A multi-adjuvant personal neoantigen vaccine generates potent immunity in melanoma

Cell(2025)10.1016/j.cell.2025.06.019

N/A

0DataRank · unranked

30 citations

Derin B. Keskin, Chloe Ran Tu, Cleo Forman, Allison P. Vanasse, Haley E. Sax +39 more

BBOX1 restrains TBK1-mTORC1 oncogenic signaling in clear cell renal cell carcinoma

Nature Communications(2025)10.1038/s41467-025-56955-y

N/A

0DataRank · unranked

7 citations

Lianxin Hu, Liwei Jia, Jin Zhou, Tao Wang, Kangsan Kim +18 more

Human cortical organoids recapitulate inter-individual variability in infant brain-growth trajectories

Cell stem cell(2025)10.1016/j.stem.2025.12.001

N/A

0DataRank · unranked

1 citations

Nana Matoba, Alvaro A. Beltran, Niyanta K. Patel, Tala M. Farah, K. Kedar Eswar +33 more

Evaluating the role of alveolar macrophages in tolerance to ozone

Toxicological Sciences(2025)10.1093/toxsci/kfaf095

N/A

0DataRank · unranked

2 citations

Morgan Nalesnik, Robert M. Immormino, Jeremy M. Simon, Jack R. Harkema, Jason R. Mock +3 more

Early cell cycle genes in cortical organoid progenitors predict interindividual variability in infant brain growth trajectories

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.07.637106

N/A

0DataRank · unranked

3 citations

Nana Matoba, Alvaro A. Beltran, Niyanta K Patel, Tala M. Farah, K. Kedar Eswar +34 more

Single-cell transcriptomics predict novel potential regulators of acute epithelial restitution in the ischemia-injured intestine

American Journal of Physiology-Gastrointestinal and Liver Physiology(2025)10.1152/ajpgi.00194.2024

N/A

0DataRank · unranked

0 citations

Jeremy M. Simon, Ismael Gomez-Martinez, Scott T. Magness, Jack Odle, Anthony T. Blikslager +2 more

Activating NRF2E79Q mutation alters the differentiation of human non-small cell lung cancer

Cancer Gene Therapy(2025)10.1038/s41417-025-00966-w

N/A

0DataRank · unranked

0 citations

Hansa Joshi, T. Hess, Zena Saleh, Nasrine Bendjilali, Rani S. Sellers +13 more

Cas9 gene therapy for Angelman syndrome traps Ube3a-ATS long non-coding RNA

Nature(2020)10.1038/s41586-020-2835-2

N/A

0DataRank · unranked

168 citations

Hanqian Mao, Giulia Fragola, Jeremy M. Simon, James L. Krantz, Hannah Bazick +4 more