Kathryn E. Holt

London School of Hygiene & Tropical Medicine

Also affiliated with European Society of Clinical Microbiology and Infectious Diseases, Monash University

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 14 papers. Top paper: “Impact of insertion sequences on convergent evolution of Shigella species”.

Impact of insertion sequences on convergent evolution of Shigella species

PLoS Genetics(2020)10.1371/journal.pgen.1008931

N/A

1.7DataRank · unranked

67 citations

Jonathan M. Monk, Helen Billman‐Jacobe, Bernhard Ø. Palsson, Kathryn E. Holt, Jane Hawkey

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

PLOS Computational Biology(2017)10.1371/journal.pcbi.1005595

N/A

1.4DataRank · unranked

8532 citations

Louise M. Judd, Claire L. Gorrie, Kathryn E. Holt, Ryan R. Wick

Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya

eLife(2021)10.7554/elife.67852

N/A

0.604DataRank · unranked

55 citations

Zoe A. Dyson, Cecilia Mbae, Ronald Ngetich, Susan Kavai, Celestine Wairimu +10 more

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

Bioinformatics(2009)10.1093/bioinformatics/btp344

N/A

0.553DataRank · unranked

39 citations

E. Shyong Tai, Alexandra P. Lewis, Satheesh Nair, Gordon Dougan, John Wain +3 more

Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434750

N/A

0.360DataRank · unranked

10 citations

Zoe A. Dyson, Cecilia Mbae, Ronald Ngetich, Susan Kavai, Celestine Wairimu +10 more

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.30.613582

N/A

0.292DataRank · unranked

5 citations

Jane Hawkey, Martin Hunt, Zamin Iqbal, Jacqueline A. Keane, Ayorinde O. Afolayan +33 more

The acquisition of rmpADC can increase virulence of classical Klebsiella pneumoniae in the absence of other hypervirulence-associated genes

mBio(2026)10.1128/mbio.03122-25

N/A

0.208DataRank · unranked

3 citations

Taryn A. Miner, Leslie A. Kent, Margaret M. C. Lam, Kathryn E. Holt, Virginia L. Miller +2 more

The acquisition of rmpADC can increase virulence of classical Klebsiella pneumoniae in the absence of other hypervirulence-associated genes

10.1101/2025.09.20.677538

N/A

0.208DataRank · unranked

3 citations

Taryn A. Miner, Leslie A. Kent, Margaret M.C. Lam, Kathryn E. Holt, Virginia L. Miller +2 more

PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training

Microbial Genomics(2024)10.1099/mgen.0.001260

N/A

0DataRank · unranked

5 citations

Catarina Inês Mendes, Finlay Maguire, Jennifer L. Guthrie, Bryan A. Wee, Sarah E. Schmedes +18 more

High-level nitrofurantoin resistance in a clinical isolate of Klebsiella pneumoniae: a comparative genomics and metabolomics analysis

mSystems(2023)10.1128/msystems.00972-23

N/A

0DataRank · unranked

13 citations

Zetao Sun, Jane Hawkey, Rafah Allobawi, Louise M. Judd, Vincenzo Carbone +8 more

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Genome Medicine(2025)10.1186/s13073-025-01551-4

N/A

0DataRank · unranked

2 citations

Jane Hawkey, Martin Hunt, Zamin Iqbal, Jacqueline A. Keane, Ayorinde O. Afolayan +33 more

The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health

Genome Medicine(2025)10.1186/s13073-025-01470-4

N/A

0DataRank · unranked

4 citations

Louise Cerdeira, Vandana Sharma, Megan E. Carey, Kathryn E. Holt, David M. Aanensen +69 more

Developmental patterns in the nasopharyngeal microbiome during infancy are associated with asthma risk

Journal of Allergy and Clinical Immunology(2020)10.1016/j.jaci.2020.10.009

N/A

0DataRank · unranked

98 citations

Anna Lang, Shu Mei Teo, Louise M. Judd, Ronald E. Gangnon, Michael D. Evans +9 more

Precision public health in the era of genomics and big data

Nature Medicine(2024)10.1038/s41591-024-03098-0

N/A

0DataRank · unranked

80 citations

Kathryn E. Holt, Guilherme Del Fiol, Andrea Baccarelli, Caitlin G. Allen, Megan C. Roberts