🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Hosein Mohimani

Carnegie Mellon University

ORCID: 0000-0003-3980-2505
MedicineBiochemistry, Genetics and Molecular BiologyChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.7Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A community resource for paired genomic and metabolomic data mining

Nature Chemical Biology(2021)10.1038/s41589-020-00724-z
Top 9%
2.5DataRank
Top 9%131 citations

Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa Acharya, Alexander A. Aksenov +95 more

Papers

Driven by 23 papers — median percentile 61. Top paper: “Feature-based molecular networking in the GNPS analysis environment”.

Feature-based molecular networking in the GNPS analysis environment

Nature Methods(2020)10.1038/s41592-020-0933-6
N/A
10.9DataRank · unranked
1581 citations

Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli +57 more

A community resource for paired genomic and metabolomic data mining

Nature Chemical Biology(2021)10.1038/s41589-020-00724-z
Top 9%
2.5DataRank
Top 9%131 citations

Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa Acharya, Alexander A. Aksenov +95 more

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery

Nature Communications(2021)10.1038/s41467-021-23502-4
N/A
1.7DataRank · unranked
76 citations

Edna Bode, Alexey Gurevich, Yan‐Ni Shi, Florian Grundmann, Deepa Acharya +11 more

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Nature Biotechnology(2016)10.1038/nbt.3597
N/A
1.3DataRank · unranked
4699 citations

Jeremy J Carver, Vanessa V Phelan, Laura M Sanchez, Neha Garg, Yao Peng +122 more

HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search

Nature Communications(2023)10.1038/s41467-023-39905-4
Top 23%
0.889DataRank
Top 23%28 citations

Mustafa Güler, Desnor N. Chigumba, Shen Wang, Neel Mittal, Cameron Miller +12 more

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

UNC Libraries(2020)10.17615/dd92-mf79
N/A
0.745DataRank · unranked
143 citations

Peng Yao, Kerry L. McPhail, Lixin Zhang, Kathleen Dorrestein, Wenyuan Shi +95 more

The undiscovered natural product potential of Actinomycetes

The Journal of Antibiotics(2025)10.1038/s41429-025-00876-x
Top 56%
0.292DataRank
Top 56%6 citations

Andrés Cumsille, Sarolt Magyari, María Taboada-Alquerque, Bahar Behsaz, Tiago Leão +13 more

Repository scale classification and decomposition of tandem mass spectral data

Scientific Reports(2021)10.1038/s41598-021-87796-6
N/A
0.241DataRank · unranked
4 citations

Hosein Mohimani, Mihir Mongia

ForestDSH: a universal hash design for discrete probability distributions

Data Mining and Knowledge Discovery(2021)10.1007/s10618-020-00732-6
N/A
0.104DataRank · unranked
1 citations

Sean Chang, Hyun Gon Yoo, Anubhav Baweja, Mihir Mongia, Hosein Mohimani +1 more

MS2Planner: improved fragmentation spectra coverage in untargeted mass spectrometry by iterative optimized data acquisition

Bioinformatics(2021)10.1093/bioinformatics/btab279
N/A
0DataRank · unranked
27 citations

Liu Cao, Louis-Félix Nothia, Hosein Mohimani, Zeyuan Zuo

Nerpa: A Tool for Discovering Biosynthetic Gene Clusters of Bacterial Nonribosomal Peptides

Metabolites(2021)10.3390/metabo11100693
N/A
0DataRank · unranked
20 citations

Azat Tagirdzhanov, Andrés Mauricio Caraballo‐Rodríguez, Louis‐Félix Nothias, Pieter C. Dorrestein, Anton Korobeynikov +3 more

Efficient Database Search via Tensor Distribution Bucketing

Lecture notes in computer science(2020)10.1007/978-3-030-47436-2_26
N/A
0DataRank · unranked
0 citations

Benjamin Soudry, Arash Gholami Davoodi, Hosein Mohimani, Mihir Mongia

Large scale sequence alignment via efficient inference in generative models

Scientific Reports(2023)10.1038/s41598-023-34257-x
N/A
0DataRank · unranked
0 citations

Chengze Shen, Arash Gholami Davoodi, Guillaume Marçais, Hosein Mohimani, Mihir Mongia

Fast mass spectrometry search and clustering of untargeted metabolomics data

Nature Biotechnology(2024)10.1038/s41587-023-01985-4
N/A
0DataRank · unranked
27 citations

Tyler M. Yasaka, Yudong Liu, Mustafa Güler, Liang Lü, Aditya Bhagwat +5 more

Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS

Nature Communications(2024)10.1038/s41467-024-49587-1
N/A
0DataRank · unranked
15 citations

Muqing Zhou, Abhinav Adduri, Yihao Zhuang, Mustafa Güler, Sitong Liu +15 more

HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search

UNC Libraries(2024)10.17615/kesb-0595
Top 100%
0DataRank
Top 100%0 citations

Liu Cao, A. Kannan, Slocum S.T, Bahar Behsaz, Alexey Gurevich +12 more

Seq2Saccharide: Discovering Oligosaccharides and Aminoglycosides Natural Products by Integrating Computational Mass Spectrometry and Genome Mining

Journal of the American Chemical Society(2025)10.1021/jacs.5c08251
N/A
0DataRank · unranked
3 citations

Bahar Behsaz, Yanjing Li, Xiaofeng Wang, Leigh Skala, Sitong Liu +11 more

Identifying variants of molecules through database search of mass spectra

Nature Computational Science(2025)10.1038/s43588-025-00923-5
N/A
0DataRank · unranked
2 citations

Benjamin Krummenacher, Thomas J. Hall, Meghana Tandon, Joshua Abrams, S. S. Ravi +5 more

Interpretable adenylation domain specificity prediction using protein language models

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.13.632878
N/A
0DataRank · unranked
0 citations

Andrew T. McNutt, Caleb N. Ellington, Krish Suraparaju, Nan Fang, Donghui Yan +8 more

MolDiscovery: Learning Mass Spectrometry Fragmentation of Small Molecules

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.28.401943
N/A
0DataRank · unranked
17 citations

Mustafa Güler, Azat Tagirdzhanov, Yiyuan Lee, Alexey Gurevich, Hosein Mohimani +1 more

MolDiscovery: Learning Mass Spectrometry Fragmentation of Small Molecules

Research Square(2020)10.21203/rs.3.rs-71854/v1
N/A
0DataRank · unranked
6 citations

Liu Cao, Mustafa Güler, Azat Tagirdzhanov, Alexey Gurevich, Hosein Mohimani

MolDiscovery: learning mass spectrometry fragmentation of small molecules

Nature Communications(2021)10.1038/s41467-021-23986-0
N/A
0DataRank · unranked
108 citations

Mustafa Güler, Azat Tagirdzhanov, Yi-Yuan Lee, Alexey Gurevich, Hosein Mohimani +1 more

Linking genomics and metabolomics to chart specialized metabolic diversity

Chemical Society Reviews(2020)10.1039/d0cs00162g
N/A
0DataRank · unranked
223 citations

Hosein Mohimani, Anelize Bauermeister, Pieter C. Dorrestein, Katherine Duncan, Marnix H. Medema +1 more