Ken Chen

The University of Texas MD Anderson Cancer Center

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.9Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A spatially resolved single-cell genomic atlas of the adult human breast

Nature(2023)10.1038/s41586-023-06252-9

Top 6%

3.8DataRank

Top 6%241 citations

Kevin Nee, Runmin Wei, Siyuan He, Quy Nguyen, Shanshan Bai +35 more

Papers

Driven by 86 papers — median percentile 41. Top paper: “A robust benchmark for detection of germline large deletions and insertions”.

A robust benchmark for detection of germline large deletions and insertions

Nature Biotechnology(2020)10.1038/s41587-020-0538-8

N/A

10.3DataRank · unranked

486 citations

Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao +45 more

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Nature Genetics(2020)10.1038/s41588-019-0576-7

N/A

8.1DataRank · unranked

783 citations

Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L. Jung, Lixing Yang +89 more

Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma

Nature Medicine(2021)10.1038/s41591-020-1125-8

N/A

7.1DataRank · unranked

282 citations

Minghao Dang, Kazuto Harada, Guangchun Han, Fang Wang, Melissa Pool Pizzi +27 more

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

Nature Genetics(2020)10.1038/s41588-019-0562-0

N/A

7.0DataRank · unranked

483 citations

Eva G. Alvarez, Adrian Baez‐Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester +80 more

Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer

Nature Genetics(2020)10.1038/s41588-019-0564-y

N/A

5.9DataRank · unranked

312 citations

Victoria T. Le, Sahaana Chandran, Yilong Li, Roel G.W. Verhaak, Rameen Beroukhim +91 more

Safety, efficacy and determinants of response of allogeneic CD19-specific CAR-NK cells in CD19+ B cell tumors: a phase 1/2 trial

Nature Medicine(2024)10.1038/s41591-023-02785-8

N/A

4.0DataRank · unranked

468 citations

Ye Li, Rafet Başar, Hind Rafei, May Daher, Jinzhuang Dou +31 more

A spatially resolved single-cell genomic atlas of the adult human breast

Nature(2023)10.1038/s41586-023-06252-9

Top 6%

3.8DataRank

Top 6%241 citations

Kevin Nee, Runmin Wei, Siyuan He, Quy Nguyen, Shanshan Bai +35 more

Blinatumomab maintenance after allogeneic hematopoietic cell transplantation for B-lineage acute lymphoblastic leukemia

Blood(2021)10.1182/blood.2021013290

N/A

2.6DataRank · unranked

87 citations

Pinaki P. Banerjee, Denái R. Milton, Xianli Jiang, Christina Ganesh, Sajad Khazal +24 more

Pathway and network analysis of more than 2500 whole cancer genomes

Nature Communications(2020)10.1038/s41467-020-14367-0

Top 9%

2.3DataRank

Top 9%117 citations

David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguél Vázquez, Abdullah Kahraman +95 more

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

Nature Communications(2020)10.1038/s41467-019-13885-w

Top 13%

1.6DataRank

Top 13%76 citations

Fengju Chen, Nuno A. Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa +91 more

Interleukin-21 engineering enhances NK cell activity against glioblastoma via CEBPD

Cancer Cell(2024)10.1016/j.ccell.2024.07.007

N/A

1.6DataRank · unranked

86 citations

May Daher, Jinzhuang Dou, Sufang Li, Rafet Başar, Hind Rafei +29 more

Single-nucleotide variant calling in single-cell sequencing data with Monopogen

Nature Biotechnology(2023)10.1038/s41587-023-01873-x

N/A

1.3DataRank · unranked

65 citations

Yukun Tan, Kian Hong Kock, Jun Wang, Xuesen Cheng, Le Min Tan +13 more

A spatially resolved single cell genomic atlas of the adult human breast

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.22.537946

Top 18%

1.1DataRank

Top 18%27 citations

Kevin Nee, Runmin Wei, Siyuan He, Quy Nguyen, Shanshan Bai +32 more

Occult polyclonality of preclinical pancreatic cancer models drives in vitro evolution

Nature Communications(2022)10.1038/s41467-022-31376-3

N/A

0.987DataRank · unranked

29 citations

Heather Geiger, Jaewon J. Lee, Roshan Sharma, Alexander Semaan, Vincent Bernard +11 more

Targeting the αv integrin/TGF-β axis improves natural killer cell function against glioblastoma stem cells

Journal of Clinical Investigation(2021)10.1172/jci142116

N/A

0.832DataRank · unranked

255 citations

Mayra Shanley, Rafet Başar, May Daher, Joy Gumin, Daniel B. Zamler +45 more

Combining AFM13, a Bispecific CD30/CD16 Antibody, with Cytokine-Activated Blood and Cord Blood–Derived NK Cells Facilitates CAR-like Responses Against CD30+ Malignancies

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-0164

N/A

0.757DataRank · unranked

154 citations

Nancy D. Marín, Mecit Kaplan, Pinaki P. Banerjee, Melissa M. Berrien-Elliott, Michelle Becker‐Hapak +38 more

Loss of metabolic fitness drives tumor resistance after CAR-NK cell therapy and can be overcome by cytokine engineering

Science Advances(2023)10.1126/sciadv.add6997

N/A

0.704DataRank · unranked

108 citations

Vakul Mohanty, Jinzhuang Dou, Yuefan Huang, Pinaki P. Banerjee, Qi Miao +25 more

Bi-order multimodal integration of single-cell data

Genome biology(2022)10.1186/s13059-022-02679-x

N/A

0.650DataRank · unranked

75 citations

Shaoheng Liang, Vakul Mohanty, Qi Miao, Yuefan Huang, Qingnan Liang +11 more

Spatially resolved transcriptomics of high-grade serous ovarian carcinoma

iScience(2022)10.1016/j.isci.2022.103923

N/A

0.641DataRank · unranked

71 citations

Sara Corvigno, Mingchu Xu, Ken Chen, Yukun Tan, Sanghoon Lee +7 more

CD28 Costimulation Augments CAR Signaling in NK Cells via the LCK/CD3ζ/ZAP70 Signaling Axis

Cancer Discovery(2024)10.1158/2159-8290.cd-24-0096

N/A

0.609DataRank · unranked

57 citations

Rafet Başar, May Daher, Hind Rafei, Ping Li, Nadima Uprety +42 more

Loss of MMR and TGFBR2 Increases the Susceptibility to Microbiota-Dependent Inflammation-Associated Colon Cancer

Cellular and Molecular Gastroenterology and Hepatology(2022)10.1016/j.jcmgh.2022.05.010

N/A

0.602DataRank · unranked

13 citations

Ana S. Almeida, Tam Tran, Mariel Barbachan e Silva, Pilib Ó Broin, Robert Dubin +8 more

CREM is a regulatory checkpoint of CAR and IL-15 signalling in NK cells

Nature(2025)10.1038/s41586-025-09087-8

N/A

0.587DataRank · unranked

49 citations

Rafet Başar, Sunil Acharya, Yu-Sung Hsu, Pinghua Liu, Deqiang Zhang +53 more

Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection

Nature Communications(2024)10.1038/s41467-023-44175-1

N/A

0.561DataRank · unranked

41 citations

Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang +16 more

Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes

Frontiers in Oncology(2021)10.3389/fonc.2021.705627

N/A

0.557DataRank · unranked

12 citations

Vakul Mohanty, Ruiping Wang, Yuefan Huang, Shaoheng Liang, Feng Wang +13 more

Genome-wide CRISPR screens identify critical targets to enhance CAR-NK cell antitumor potency

Cancer Cell(2025)10.1016/j.ccell.2025.07.021

N/A

0.553DataRank · unranked

39 citations

Rafet Başar, Jeong-Min Park, Nadima Uprety, Rejeena Shrestha, Francia Reyes Silva +31 more

Activated B cells suppress T-cell function through metabolic competition

Journal for ImmunoTherapy of Cancer(2022)10.1136/jitc-2022-005644

N/A

0.542DataRank · unranked

36 citations

Rafet Başar, Yuefan Huang, Fang Wang, Natalia Baran, Pinaki P. Banerjee +22 more

Comparing neoantigen cancer vaccines and immune checkpoint therapy unveils an effective vaccine and anti-TREM2 macrophage-targeting dual therapy

Cell Reports(2024)10.1016/j.celrep.2024.114875

N/A

0.539DataRank · unranked

14 citations

Alexander S. Shavkunov, Qi Miao, Akata Saha, Tomoyuki Minowa, Martina Molgora +12 more

Integrated multi-omics analyses identify key anti-viral host factors and pathways controlling SARS-CoV-2 infection

Research Square(2022)10.21203/rs.3.rs-1910932/v1

N/A

0.538DataRank · unranked

11 citations

Yanjun Wei, Jing Zou, Roshni Jaffery, Shaoheng Liang, Caishang Zheng +6 more

Generation of glucocorticoid-resistant SARS-CoV-2 T cells for adoptive cell therapy

Cell Reports(2021)10.1016/j.celrep.2021.109432

N/A

0.533DataRank · unranked

34 citations

Nadima Uprety, Emily L. Ensley, May Daher, Kimberly Klein, Fernando D. Martínez +29 more

BATF is a major driver of NK cell epigenetic reprogramming and dysfunction in AML

Science Translational Medicine(2024)10.1126/scitranslmed.adp0004

N/A

0.524DataRank · unranked

32 citations

Anand K. Singh, Rafet Başar, Nadima Uprety, Ye Li, Huihui Fan +45 more

Genomic, Transcriptomic, and Proteomic Profiling of Metastatic Breast Cancer

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-20-4048

N/A

0.510DataRank · unranked

29 citations

Xiaofeng Zheng, Christian X. Cruz Pico, Tae‐Beom Kim, Ken Chen, Anil Korkut +9 more

In-depth analysis of SARS-CoV-2–specific T cells reveals diverse differentiation hierarchies in vaccinated individuals

JCI Insight(2022)10.1172/jci.insight.156559

N/A

0.505DataRank · unranked

28 citations

Muharrem Müftüoğlu, Shaoheng Liang, Mahesh Basyal, Jiangxing Lv, Mehmet Emin Akdogan +5 more

Spatial and multiomics analysis of human and mouse lung adenocarcinoma precursors reveals TIM-3 as a putative target for precancer interception

Cancer Cell(2025)10.1016/j.ccell.2025.04.003

N/A

0.505DataRank · unranked

28 citations

Pingjun Chen, Muhammad Aminu, Jiànróng Lǐ, Junya Fujimoto, Yanhua Tian +47 more

Spatial charting of single cell transcriptomes in tissues

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469915

N/A

0.500DataRank · unranked

27 citations

Siyuan He, Shanshan Bai, Emi Sei, Min Hu, Alastair M. Thompson +4 more

Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples

Nature Communications(2025)10.1038/s41467-025-63414-1

N/A

0.494DataRank · unranked

26 citations

Max Molina Ayala, Sharia Hernandez, Wei Lu, Khaja Khan, Alejandra G. Serrano +69 more

Single-cell chromatin accessibility profiling of acute myeloid leukemia reveals heterogeneous lineage composition upon therapy-resistance

Communications Biology(2023)10.1038/s42003-023-05120-6

N/A

0.425DataRank · unranked

16 citations

Feng Wang, Andy G.X. Zeng, Alex Murison, Katarzyna Tomczak, Dapeng Hao +14 more

Depletion of Effector Regulatory T Cells Associates with Major Response to Induction Dual Immune Checkpoint Blockade

Cancer Discovery(2025)10.1158/2159-8290.cd-24-1390

N/A

0.406DataRank · unranked

14 citations

Nils-Petter Rudqvist, Bo Jiang, Shengbin Ye, Shan He, Qingnan Liang +26 more

Uncoupling of gene expression from copy number presents therapeutic opportunities in aneuploid cancers

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100349

N/A

0.396DataRank · unranked

13 citations

Fang Wang, Gordon B. Mills, Ken Chen, Vakul Mohanty

Transcriptional and phenotypic heterogeneity underpinning venetoclax resistance in AML

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.27.577579

N/A

0.360DataRank · unranked

10 citations

Natalia Baran, Yuefan Huang, Cassandra L. Ramage, Laurie Cooper, Shan He +7 more

Integrative Prognostic Machine Learning Models in Mantle Cell Lymphoma

Cancer Research Communications(2023)10.1158/2767-9764.crc-23-0083

N/A

0.292DataRank · unranked

6 citations

Preetesh Jain, Chi Young Ok, Koji Sasaki, Han Chen, Michael Wang +2 more

Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors

NAR Cancer(2022)10.1093/narcan/zcac038

N/A

0.269DataRank · unranked

5 citations

Shaoheng Liang, Chunyu Xu, Yanjun Wei, Yunfei Wang, Yukun Tan +12 more

Joint multi-omics discriminant analysis with consistent representation learning using PANDA

Research Square(2024)10.21203/rs.3.rs-4353037/v1

N/A

0.217DataRank · unranked

2 citations

Muhammad Aminu, Lingzhi Hong, Natalie I. Vokes, Stephanie Schmidt, Maliazurina B. Saad +15 more

Gene Expression Profiles Perturbed by Injury to the Mouse Intervertebral Disc

American Journal of Physical Medicine & Rehabilitation(2024)10.1097/phm.0000000000002541

N/A

0.208DataRank · unranked

3 citations

Zuozhen Tian, Huan Wang, Ling Qin, Motomi Enomoto‐Iwamoto, Yejia Zhang +1 more

Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.08.447617

N/A

0.165DataRank · unranked

2 citations

Qingnan Liang, Rui Chen, Ken Chen, Shaoheng Liang

Integrated analysis of molecular and clinical features associated with overall survival in melanoma patients with brain metastasis

Acta Neuropathologica Communications(2025)10.1186/s40478-025-01978-1

N/A

0.117DataRank · unranked

1 citations

Meredith S. Pelster, Merve Hasanov, Renato Guerrieri, Courtney W. Hudgens, Debora Alejandra Ledesma +19 more

A visual–omics foundation model to bridge histopathology image with transcriptomics

Research Square(2025)10.21203/rs.3.rs-5183775/v1

N/A

0.104DataRank · unranked

1 citations

Weiqing Chen, Pengzhi Zhang, Tu Tran, Yiwei Xiao, Shengyu Li +15 more

Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.08.332080

N/A

0.104DataRank · unranked

1 citations

Jinzhuang Dou, Ramiz Iqbal, Ken Chen, Shaoheng Liang

Data from Combining AFM13, a Bispecific CD30/CD16 Antibody, with Cytokine-Activated Blood and Cord Blood–Derived NK Cells Facilitates CAR-like Responses Against CD30+ Malignancies

(2023)10.1158/1078-0432.c.6530711.v1

N/A

0.104DataRank · unranked

1 citations

Nancy D. Marín, Mecit Kaplan, Pinaki P. Banerjee, Melissa M. Berrien-Elliott, Michelle Becker‐Hapak +38 more

Comparison of imaging-based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed, paraffin-embedded tumor samples

Research Square(2025)10.21203/rs.3.rs-5656204/v1

N/A

0.104DataRank · unranked

1 citations

Nejla Ozirmak Lermi, Max Molina Ayala, Sharia Hernandez, Wei Lu, Khaja Khan +25 more

Neoantigen Cancer Vaccines and Different Immune Checkpoint Therapies Each Utilize Both Converging and Distinct Mechanisms that in Combination Enable Synergistic Therapeutic Efficacy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.20.570816

N/A

0DataRank · unranked

3 citations

Alexander S. Shavkunov, Qi Miao, Akata Saha, Charmelle D. Williams, Anna M. Highsmith +7 more

Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract

Genes(2020)10.3390/genes11060645

N/A

0DataRank · unranked

70 citations

Scott Kopetz, Eduardo Vilar, John Paul Shen, Ken Chen, Anirban Maitra +1 more

Unbiased integration of single cell multi-omics data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.11.422014

N/A

0DataRank · unranked

25 citations

Shaoheng Liang, Vakul Mohanty, Xuesen Cheng, Sangbae Kim, Jongsu Choi +5 more

Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.08.033001

N/A

0DataRank · unranked

21 citations

Scott Kopetz, Eduardo Vilar, John Paul Shen, Ken Chen, Anirban Maitra +1 more

Unbiased integration of single cell multi-omics data

Research Square(2020)10.21203/rs.3.rs-126986/v1

N/A

0DataRank · unranked

6 citations

Shaoheng Liang, Vakul Mohanty, Xuesen Cheng, Sangbae Kim, Jongsu Choi +5 more

Single-cell copy number lineage tracing enabling gene discovery

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.12.038281

N/A

0DataRank · unranked

1 citations

Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jinzhuang Dou, Jincheng Han +6 more

A role for KIF9 in male fertility

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.21.001602

N/A

0DataRank · unranked

0 citations

Sang Yeon Cho, Yongwei Zhang, Amanda P. Beck, Jeffrey E. Segall, Ken Chen

Ab initio Spillover Compensation in CyTOF Data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.14.151225

N/A

0DataRank · unranked

0 citations

Fang Wang, Jinzhuang Dou, Ramiz Iqbal, Muharrem Müftüoğlu, Rafet Başar +4 more

OmicPioneer-sc: an integrated, interactive visualization environment for single-cell sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.31.363580

N/A

0DataRank · unranked

0 citations

Mary A. Rohrdanz, Mark Stucky, James Melott, Jun Ma, Vakul Mohanty +8 more

Single-cell RNA-seq analysis reveals compartment-specific heterogeneity and plasticity of microglia

iScience(2021)10.1016/j.isci.2021.102186

N/A

0DataRank · unranked

61 citations

Wenjuan Ru, Jay R T. Adolacion, Michael Spurgat, Xin Liu, Subo Yuan +9 more

MEDALT: single-cell copy number lineage tracing enabling gene discovery

Genome biology(2021)10.1186/s13059-021-02291-5

N/A

0DataRank · unranked

45 citations

Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jinzhuang Dou, Jincheng Han +6 more

Extended live-cell barcoding approach for multiplexed mass cytometry

Scientific Reports(2021)10.1038/s41598-021-91816-w

N/A

0DataRank · unranked

23 citations

Li Li, Shaoheng Liang, Duncan H. Mak, Angelique Lin, Junxiang Fang +4 more

Response to Hypomethylating Agents in Myelodysplastic Syndrome Is Associated With Emergence of Novel TCR Clonotypes

Frontiers in Immunology(2021)10.3389/fimmu.2021.659625

N/A

0DataRank · unranked

17 citations

Patrick K. Reville, Xianli Jiang, Hui Yang, Alexandre Reuben, Jin S. Im +6 more

Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2021)10.1109/tcbb.2021.3094650

N/A

0DataRank · unranked

5 citations

Qingnan Liang, Rui Chen, Ken Chen, Shaoheng Liang

Sensei: How Many Samples to Tell Evolution in Single-Cell Studies?

Research Square(2021)10.21203/rs.3.rs-639869/v1

N/A

0DataRank · unranked

1 citations

Jason Willis, Jinzhuang Dou, Vakul Mohanty, Yuefan Huang, Eduardo Vilar +2 more

BHLHE40 Regulates the T-Cell Effector Function Required for Tumor Microenvironment Remodeling and Immune Checkpoint Therapy Efficacy

Cancer Immunology Research(2022)10.1158/2326-6066.cir-21-0129

N/A

0DataRank · unranked

48 citations

Alexander S. Shavkunov, Qi Miao, Nicholas N. Jarjour, Sunita Keshari, Ekaterina Esaulova +9 more

Molecular Correlates of Venous Thromboembolism (VTE) in Ovarian Cancer

Cancers(2022)10.3390/cancers14061496

N/A

0DataRank · unranked

23 citations

Nicholas W. Bateman, Sanghoon Lee, Li Zhao, Jun Yao, Yukun Tan +14 more

Comprehensive insights in GRK4 and hypertension: From mechanisms to potential therapeutics

Pharmacology & Therapeutics(2022)10.1016/j.pharmthera.2022.108194

N/A

0DataRank · unranked

21 citations

John E. Hall, Pedro A. José, Ken Chen, Chunyu Zeng, Jian Yang

Sensei: how many samples to tell a change in cell type abundance?

BMC Bioinformatics(2022)10.1186/s12859-021-04526-5

N/A

0DataRank · unranked

8 citations

Jason Willis, Jinzhuang Dou, Vakul Mohanty, Yuefan Huang, Eduardo Vilar +2 more

KLF5 governs sphingolipid metabolism and barrier function of the skin

Genes & Development(2022)10.1101/gad.349662.122

N/A

0DataRank · unranked

27 citations

Yinglu Guan, Lisa Patricia Deliu, Ericka Humphrey, Joanna K. Frontera, Youn Joo Yang +20 more

Integrated single-cell functional and molecular profiling of extracellular vesicle secretion in metastatic breast cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.13.503860

N/A

0DataRank · unranked

0 citations

Melisa Martinez-Paniagua, Ali Rezvan, Melisa J. Montalvo, Vakul Mohanty, Ken Chen +3 more

Pathway centric analysis for single-cell RNA-seq and spatial transcriptomics data with GSDensity

Nature Communications(2023)10.1038/s41467-023-44206-x

N/A

0DataRank · unranked

21 citations

Yuefan Huang, Shan He, Ken Chen, Qingnan Liang

Identifying signatures of EV secretion in metastatic breast cancer through functional single-cell profiling

iScience(2023)10.1016/j.isci.2023.106482

N/A

0DataRank · unranked

10 citations

Melisa Martinez-Paniagua, Ali Rezvan, Melisa J. Montalvo, Vakul Mohanty, Ken Chen +3 more

Pathway Centric Analysis for single-cell RNA-seq and Spatial Transcriptomics Data with GSDensity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.21.546022

N/A

0DataRank · unranked

1 citations

Yuefan Huang, Shan He, Ken Chen, Qingnan Liang

Data from Genomic, Transcriptomic, and Proteomic Profiling of Metastatic Breast Cancer

(2023)10.1158/1078-0432.c.6530036

Top 100%

0DataRank

Top 100%0 citations

Xiaofeng Zheng, Christian X. Cruz Pico, Tae‐Beom Kim, Ken Chen, Anil Korkut +9 more

Data from Integrative Prognostic Machine-Learning Models in Mantle Cell Lymphoma

(2023)10.1158/2767-9764.c.6736333.v1

Top 100%

0DataRank

Top 100%0 citations

Preetesh Jain, Chi Young Ok, Koji Sasaki, Han Chen, Michael Wang +2 more

Data from Integrative Prognostic Machine Learning Models in Mantle Cell Lymphoma

(2023)10.1158/2767-9764.c.6736333

Top 100%

0DataRank

Top 100%0 citations

Preetesh Jain, Chi Young Ok, Koji Sasaki, Han Chen, Michael Wang +2 more

Stem cell activity-coupled suppression of endogenous retrovirus governs adult tissue regeneration

Cell(2024)10.1016/j.cell.2024.10.007

N/A

0DataRank · unranked

18 citations

Soo‐Jin Kim, Ericka Humphrey, Richa Nayak, Yinglu Guan, Qingnan Liang +23 more

Label-aware distance mitigates temporal and spatial variability for clustering and visualization of single-cell gene expression data

Communications Biology(2024)10.1038/s42003-024-05988-y

N/A

0DataRank · unranked

4 citations

Jinzhuang Dou, Ramiz Iqbal, Ken Chen, Shaoheng Liang

Depletion of effector regulatory T cells drives major response to induction dual immune checkpoint blockade

medRxiv(2024)10.1101/2024.01.04.23300616

N/A

0DataRank · unranked

0 citations

Nils-Petter Rudqvist, Bo Jiang, Shengbin Ye, Shan He, Qingnan Liang +25 more

CoCo-ST: Comparing and Contrasting Spatial Transcriptomics data sets using graph contrastive learning

Research Square(2024)10.21203/rs.3.rs-4359834/v1

N/A

0DataRank · unranked

0 citations

Muhammad Aminu, Bo Zhu, Natalie I. Vokes, Hong Chen, Lingzhi Hong +18 more

Soluble immune factor profiles in blood and CSF associated with LRRK2 mutations and Parkinson’s disease

npj Parkinson s Disease(2025)10.1038/s41531-025-01215-5

N/A

0DataRank · unranked

1 citations

Yuhang Zhao, Sarfraz Ahmed, Jackson G. Schumacher, Jae Suk Ahn, L Shi +10 more

CyTOF-based profiling of circulating tumor cells predicts aggressiveness and therapy response in SCLC liquid biopsies at a personalized level

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.16.694669

N/A

0DataRank · unranked

1 citations

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