John I. Murray

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 18 papers. Top paper: “The Role of Heat Shock Transcription Factor 1 in the Genome-wide Regulation of the Mammalian Heat Shock Response”.

The Role of Heat Shock Transcription Factor 1 in the Genome-wide Regulation of the Mammalian Heat Shock Response

Molecular Biology of the Cell(2004)10.1091/mbc.e03-10-0738

N/A

17.8DataRank · unranked

288 citations

John I. Murray, Sara J. Hartman, David Botstein, Richard M. Myers, Nathan D. Trinklein

SAVER: gene expression recovery for single-cell RNA sequencing

Nature Methods(2018)10.1038/s41592-018-0033-z

N/A

1.0DataRank · unranked

851 citations

Jingshu Wang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, Roberto Bonasio +7 more

Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans

Genome Research(2011)10.1101/gr.114587.110

N/A

0.831DataRank · unranked

254 citations

Zhi John Lu, Mei Zhong, Mihail Sarov, John I. Murray, Cathleen M. Brdlik +13 more

The anterior Hox gene ceh-13 and elt-1/GATA activate the posterior Hox genes nob-1 and php-3 to specify posterior lineages in the C. elegans embryo

PLoS Genetics(2022)10.1371/journal.pgen.1010187

N/A

0.479DataRank · unranked

14 citations

Elicia Preston, Jeremy P. Crawford, Jonathan D. Rumley, Prativa Amom, Breana D. Anderson +8 more

Lineage-specific control of convergent differentiation by a Forkhead repressor

Development(2021)10.1242/dev.199493

N/A

0DataRank · unranked

17 citations

Julia M. Rogers, Jonathan D. Rumley, Shai Shaham, Martha L. Bulyk, John I. Murray +2 more

Young transposable elements rewired gene regulatory networks in human and chimpanzee hippocampal intermediate progenitors

The Medicine Forum(2021)10.1101/2021.11.24.469877

N/A

0DataRank · unranked

3 citations

Samantha M. Barnada, Christopher R. L. Large, John I. Murray, Marco Trizzino, Sruti Patoori

The anterior Hox gene ceh-13 and elt-1/GATA activate the posterior Hox genes nob-1 and php-3 to specify posterior lineages in the C. elegans embryo

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.09.430385

N/A

0DataRank · unranked

1 citations

Elicia Preston, Jeremy P. Crawford, Jonathan D. Rumley, Prativa Amom, Breana D. Anderson +7 more

Young transposable elements rewired gene regulatory networks in human and chimpanzee hippocampal intermediate progenitors

Development(2022)10.1242/dev.200413

N/A

0DataRank · unranked

33 citations

Samantha M. Barnada, Christopher R. L. Large, John I. Murray, Marco Trizzino, Sruti Patoori

Computational modeling and analysis of the morphogenetic domain signaling networks regulating C. elegans embryogenesis

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.05.058

N/A

0DataRank · unranked

2 citations

Thao Nguyen Bach, Xingyu Chen, Khyati Raghunath Chandratre, John I. Murray, Zhongying Zhao +2 more

pop-1/TCF, ref-2/ZIC and T-box factors regulate the development of anterior cells in the C. elegans embryo

Developmental Biology(2022)10.1016/j.ydbio.2022.05.019

N/A

0DataRank · unranked

3 citations

Elicia Preston, Dylan Cook, Felicia Peng, Amanda L. Zacharias, Lucy Wu +3 more

The proprotein convertase BLI-4 promotes collagen secretion prior to assembly of the Caenorhabditis elegans cuticle

PLoS Genetics(2023)10.1371/journal.pgen.1010944

N/A

0DataRank · unranked

19 citations

Jennifer D. Cohen, Alexandra Belfi, John I. Murray, J. Adams, Andrew Chisholm +2 more

Mechanisms of lineage specification in Caenorhabditis elegans

Genetics(2023)10.1093/genetics/iyad174

N/A

0DataRank · unranked

14 citations

John I. Murray, Jun Liu

Transcript accumulation rates in the early Caenorhabditis elegans embryo

Science Advances(2023)10.1126/sciadv.adi1270

N/A

0DataRank · unranked

6 citations

Cameron Watkins, John I. Murray, Priya Sivaramakrishnan

Abnormal behavior is reversible in a chromatin mutant

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.564525

N/A

0DataRank · unranked

2 citations

Monica N. Reeves, Hsiao‐Lin V. Wang, Jaely Z. Chavez, R. Rastogi, Sindy R. Chavez +9 more

Ectopic transcription due to inherited histone methylation may interfere with the ongoing function of differentiated neurons

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2513137122

N/A

0DataRank · unranked

1 citations

Monica N. Reeves, Sindy R. Chavez, Hsiao‐Lin V. Wang, Jaely Z. Chavez, R. Rastogi +14 more

LIVEtools: an R Package for Visualizing C. elegans Embryo Cell Tracking Data

PubMed(2025)10.17912/micropub.biology.001933

N/A

0DataRank · unranked

0 citations

Sreekar Kutagulla, John I. Murray, Priya Sivaramakrishnan, Yuntian Gan

Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors

UNC Libraries(2020)10.17615/awrf-kz95

N/A

0DataRank · unranked

2 citations

John C. Matese, Karen E. Alexander, Myra M. Hurt, John I. Murray, Alok J. Saldanha +6 more

ngn-1/neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in theCaenorhabditis elegansNervous System

G3 Genes Genomes Genetics(2020)10.1534/g3.120.401126

N/A

0DataRank · unranked

13 citations

Alexandra Beasley, Jessica Radchuk, Zachery Mielko, Elicia Preston, Sidney Stuckett +3 more