Lacy M. Simons

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 58 papers. Top paper: “A functional map of HIV-host interactions in primary human T cells”.

A functional map of HIV-host interactions in primary human T cells

Nature Communications(2022)10.1038/s41467-022-29346-w

N/A

1.2DataRank · unranked

52 citations

Judd F. Hultquist, Michael McGregor, Mehdi Bouhaddou, Ryan T. Leenay, Lacy M. Simons +17 more

A clade of SARS-CoV-2 viruses associated with lower viral loads in patient upper airways

EBioMedicine(2020)10.1016/j.ebiom.2020.103112

N/A

0.689DataRank · unranked

98 citations

Hannah Nam, Scott C. Roberts, Lacy M. Simons, Lawrence J. Jennings, Chao Qi +6 more

A Unique Clade of SARS-CoV-2 Viruses is Associated with Lower Viral Loads in Patient Upper Airways

medRxiv(2020)10.1101/2020.05.19.20107144

N/A

0.646DataRank · unranked

73 citations

Hannah Nam, Scott C. Roberts, Lacy M. Simons, Lawrence J. Jennings, Chao Qi +6 more

Multiple expansions of globally uncommon SARS-CoV-2 lineages in Nigeria

Nature Communications(2022)10.1038/s41467-022-28317-5

N/A

0.593DataRank · unranked

51 citations

Lacy M. Simons, O. M. Adewumi, Adeola Fowotade, Ewean Chukwuma Omoruyi, Johnson Adekunle Adeniji +15 more

Recognition of HIV-1 capsid by PQBP1 licenses an innate immune sensing of nascent HIV-1 DNA

Molecular Cell(2022)10.1016/j.molcel.2022.06.010

N/A

0.584DataRank · unranked

48 citations

João I. Mamede, Derrick Lau, Narae Ahn, María Teresa Sánchez-Aparicio, Joshua Temple +16 more

Prolonged exposure to lung-derived cytokines is associated with activation of microglia in patients with COVID-19

JCI Insight(2024)10.1172/jci.insight.178859

N/A

0.457DataRank · unranked

20 citations

Taylor A. Poor, Lango Sichizya, Estefani Diaz, Joseph I. Bailey, Sahil Soni +14 more

Rapid and Sensitive Detection of Antigen from SARS-CoV-2 Variants of Concern by a Multivalent Minibinder-Functionalized Nanomechanical Sensor

Analytical Chemistry(2022)10.1021/acs.analchem.2c01221

N/A

0.345DataRank · unranked

9 citations

Andrew C. Hunt, Gajendra S. Shekhawat, Lauren Carter, Sidney Chan, Kejia Wu +9 more

Leveraging biotin-based proximity labeling to identify cellular factors governing early alphaherpesvirus infection

mBio(2024)10.1128/mbio.01445-24

N/A

0.330DataRank · unranked

8 citations

Qing Fan, Lacy M. Simons, Samuel N. Smukowski, Caitlin Pegg, Richard Longnecker +4 more

Release of P-TEFb from the Super Elongation Complex promotes HIV-1 latency reversal

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.01.582881

N/A

0.125DataRank · unranked

1 citations

Miriam Walter, Shimaa Soliman, Lacy M. Simons, Daphne Cornish, Ariel W T Halle +5 more

Intra-Host Evolution of SARS-CoV-2 During Persistent Infection of Pediatric COVID-19 Patients

Viruses(2025)10.3390/v17101313

N/A

0.104DataRank · unranked

1 citations

Tien Doan, Estefany Rios-Guzman, Jessica Maciuch, Lacy M. Simons, Dulce S. Garcia +6 more

Blockade of TGF-β signaling reactivates HIV-1/SIV reservoirs and immune responses in vivo

JCI Insight(2022)10.1172/jci.insight.162290

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0DataRank · unranked

26 citations

Yanique Thomas, Mariluz Araínga, Crystal Carter, Lisa Shirreff, Muhammad Arif +20 more

Severity of Illness Caused by Severe Acute Respiratory Syndrome Coronavirus 2 Variants of Concern in Children: A Single-Center Retrospective Cohort Study

Journal of the Pediatric Infectious Diseases Society(2022)10.1093/jpids/piac068

N/A

0DataRank · unranked

26 citations

Ramón Lorenzo-Redondo, Megan E. Reyna, Lacy M. Simons, Judd F. Hultquist, Ami B. Patel +10 more

Serological Markers of SARS-CoV-2 Reinfection

mBio(2022)10.1128/mbio.02141-21

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0DataRank · unranked

16 citations

Kathryn Bowman, Alex Zhu, Stephanie Fischinger, Samuel Beger, Jenny S. Maron +25 more

TRIM5α Restriction of HIV-1-N74D Viruses in Lymphocytes Is Caused by a Loss of Cyclophilin A Protection

Viruses(2022)10.3390/v14020363

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0DataRank · unranked

16 citations

Lacy M. Simons, Karen A. Kirby, Ángel Bulnes‐Ramos, Pan Hu, Stefan G. Sarafianos +3 more

Assessment of Virological Contributions to COVID-19 Outcomes in a Longitudinal Cohort of Hospitalized Adults

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac027

N/A

0DataRank · unranked

12 citations

Ramón Lorenzo-Redondo, Meg Gibson, Sarah L. Kinch, Jacob P. Vandervaart, Nina L. Reiser +13 more

Rab11-FIP1C Is Dispensable for HIV-1 Replication in Primary CD4+T Cells, but Its Role Is Cell Type Dependent in Immortalized Human T-Cell Lines

Journal of Virology(2022)10.1128/jvi.00876-22

N/A

0DataRank · unranked

6 citations

Huxley K. Hoffman, Hannah M. Carter, Lacy M. Simons, Lwar Naing, Sherimay D. Ablan +5 more

ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes

Viruses(2022)10.3390/v14122714

N/A

0DataRank · unranked

6 citations

Lukasz Jaroszewski, Adam Godzik, Arash Iranzadeh, Lacy M. Simons, Taylor J. Dean +4 more

An immunoPET probe to SARS-CoV-2 reveals early infection of the male genital tract in rhesus macaques

Research Square(2022)10.21203/rs.3.rs-1479315/v1

N/A

0DataRank · unranked

11 citations

Yanique Thomas, Robert V. Blair, Sadia Samer, Mark Doyle, Cecily C. Midkiff +13 more

An immunoPET probe to SARS-CoV-2 reveals early infection of the male genital tract in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.25.481974

N/A

0DataRank · unranked

7 citations

Yanique Thomas, Robert V. Blair, Sadia Samer, Mark Doyle, Cecily C. Midkiff +13 more

Bioengineering multifunctional extracellular vesicles for targeted delivery of biologics to T cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.14.491879

N/A

0DataRank · unranked

6 citations

Lacy M. Simons, Katherine E. Berman, Luyi Cheng, Julius B. Lucks, Judd F. Hultquist +2 more

Rab11-FIP1C is dispensable for HIV-1 replication in primary CD4 + T cells but its role is cell-type-dependent in immortalized human T-cell lines

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494784

N/A

0DataRank · unranked

0 citations

Huxley K. Hoffman, Hannah Carter, Lacy M. Simons, Lwar Naing, Sherimay D. Ablan +4 more

ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes

Preprints.org(2022)10.20944/preprints202210.0241.v1

N/A

0DataRank · unranked

0 citations

Lukasz Jaroszewski, Adam Godzik, Arash Iranzadeh, Lacy M. Simons, Taylor Joseph Dean +4 more

Genetically encoding multiple functionalities into extracellular vesicles for the targeted delivery of biologics to T cells

Nature Biomedical Engineering(2023)10.1038/s41551-023-01142-x

N/A

0DataRank · unranked

76 citations

Lacy M. Simons, Katherine E. Berman, Luyi Cheng, Beth N. DiBiase, Michelle Hung +4 more

Large library docking for novel SARS‐CoV ‐2 main protease non‐covalent and covalent inhibitors

Protein Science(2023)10.1002/pro.4712

N/A

0DataRank · unranked

43 citations

Conner Bardine, Stefan Gahbauer, Isha Singh, Tyler C. Detomasi, Kris M. White +26 more

Africa-specific human genetic variation near CHD1L associates with HIV-1 load

Nature(2023)10.1038/s41586-023-06370-4

N/A

0DataRank · unranked

27 citations

Immacolata Porreca, Gennaro Iaconis, Hoi Ping Mok, Subhankar Mukhopadhyay, Emre Karakoç +66 more

Extending the range of Plasmodium falciparum transmission blocking antibodies

Vaccine(2023)10.1016/j.vaccine.2023.04.042

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0DataRank · unranked

16 citations

Patricia Ferrer, Nita Gombakomba, Knashka Underwood, Raúl Herrera, David L. Narum +11 more

Resurgence of SARS-CoV-2 Delta after Omicron variant superinfection in an immunocompromised pediatric patient

Virology Journal(2023)10.1186/s12985-023-02186-w

N/A

0DataRank · unranked

3 citations

Lacy M. Simons, Maria Francesca Reyes Agnes, Taylor Heald‐Sargent, William J. Muller, Larry K. Kociolek +4 more

Evaluation of the analytical performance of the 15-minute point-of-care DASH™ SARS-CoV-2 RT-qPCR test

Diagnostic Microbiology and Infectious Disease(2023)10.1016/j.diagmicrobio.2023.116120

N/A

0DataRank · unranked

4 citations

Jennifer L. Reed, Kirsten M. Knapton, Tania Afzal, Abhishek Agarwal, Jakob Schaeffer +8 more

Altered RSV Epidemiology and Genetic Diversity Following the COVID-19 Pandemic

Research Square(2023)10.21203/rs.3.rs-3712859/v1

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0DataRank · unranked

5 citations

Estefany Rios-Guzman, Lacy M. Simons, Taylor J. Dean, Francesca Agnes, Anna Pawlowski +6 more

Quantity of SARS-CoV-2 RNA copies exhaled per minute during natural breathing over the course of COVID-19 infection

medRxiv(2023)10.1101/2023.09.06.23295138

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0DataRank · unranked

4 citations

Guangyu Zhou, Judd F. Hultquist, Lacy M. Simons, Ramon Lorenzo- Redondo, Egon A. Ozer +16 more

SARS-CoV-2 Bottlenecks and Tissue-Specific Adaptation in the Central Nervous System

Research Square(2023)10.21203/rs.3.rs-3220157/v1

N/A

0DataRank · unranked

2 citations

Jacob Class, Lacy M. Simons, Ramón Lorenzo-Redondo, Laura Cooper, Tanushree Dangi +5 more

Live imaging of the airway epithelium reveals that mucociliary clearance modulates SARS-CoV-2 spread

Research Square(2023)10.21203/rs.3.rs-3246773/v1

N/A

0DataRank · unranked

0 citations

Mark E. Becker, Laura Martin‐Sancho, Lacy M. Simons, Michael D. McRaven, Sumit K. Chanda +2 more

Deviations in RSV epidemiological patterns and population structures in the United States following the COVID-19 pandemic

Nature Communications(2024)10.1038/s41467-024-47757-9

N/A

0DataRank · unranked

88 citations

Lacy M. Simons, Taylor J. Dean, Francesca Agnes, Anna Pawlowski, Arghavan Alisoltani +6 more

Distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia

Nature Immunology(2024)10.1038/s41590-024-01914-w

N/A

0DataRank · unranked

17 citations

Ziyou Ren, Karolina J. Senkow, Rogan A. Grant, Catherine A. Gao, Elizabeth S. Malsin +91 more

Genomic characterization of SARS-CoV-2 in Guinea, West Africa

PLoS ONE(2024)10.1371/journal.pone.0299082

N/A

0DataRank · unranked

8 citations

Josué Togo, Lacy M. Simons, Souleymane Diallo, Mohamed Lamine Magassouba, Mamadou Keita +9 more

Release of P-TEFb from the Super Elongation Complex promotes HIV-1 latency reversal

PLoS Pathogens(2024)10.1371/journal.ppat.1012083

N/A

0DataRank · unranked

5 citations

Shimaa Soliman, Miriam Walter, Lacy M. Simons, Daphne Cornish, Simone De Fabritiis +7 more

Integration of individualized and population-level molecular epidemiology data to model COVID-19 outcomes

Cell Reports Medicine(2024)10.1016/j.xcrm.2023.101361

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0DataRank · unranked

2 citations

Lacy M. Simons, Taylor J. Dean, Estefany Rios-Guzman, Matthew Caputo, Arghavan Alisoltani +12 more

COVID-19 outbreak and genomic investigation in an inpatient behavioral health unit

Antimicrobial Stewardship & Healthcare Epidemiology(2024)10.1017/ash.2024.40

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0DataRank · unranked

1 citations

Alina G. Stancovici, Lacy M. Simons, Grace Barajas, K. Glenn, Rachel Palmieri Weber +5 more

Quantity of SARS-CoV-2 RNA copies exhaled per minute during natural breathing over the course of COVID-19 infection

(2024)10.7554/elife.91686

N/A

0DataRank · unranked

0 citations

Guangyu Zhou, Judd F. Hultquist, Lacy M. Simons, Ramon Lorenzo- Redondo, Egon A. Ozer +16 more

Author Response: Quantity of SARS-CoV-2 RNA copies exhaled per minute during natural breathing over the course of COVID-19 infection

(2024)10.7554/elife.91686.1.sa3

N/A

0DataRank · unranked

0 citations

Guangyu Zhou, Judd F. Hultquist, Lacy M. Simons, Ramon Lorenzo- Redondo, Egon A. Ozer +16 more

Quantity of SARS-CoV-2 RNA copies exhaled per minute during natural breathing over the course of COVID-19 infection

(2024)10.7554/elife.91686.1

N/A

0DataRank · unranked

0 citations

Guangyu Zhou, Judd F. Hultquist, Lacy M. Simons, Ramon Lorenzo- Redondo, Egon A. Ozer +16 more

Targeting Interactions Between Siglec-10 and α3β1 Integrin Enhances Macrophage-Mediated Phagocytosis of Pancreatic Cancer

Cancer Research(2025)10.1158/0008-5472.can-25-0977

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0DataRank · unranked

8 citations

Gauri Mirji, Sidra Islam, Lacy M. Simons, Smita Bhat, Amanda Pires Bonfanti +10 more

The ability of SAMHD1-deficient monocytes to trigger the Type I IFN response depends on cGAS and mitochondrial DNA

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110430

N/A

0DataRank · unranked

5 citations

Isabelle K. Vila, Charlotte Luchsinger, Cinzia Bertelli, Moritz Schüssler, Clara Taffoni +13 more

Nanomechanical systems for the rapid detection of HIV-1 p24 antigen

Biosensors and Bioelectronics(2025)10.1016/j.bios.2025.117395

N/A

0DataRank · unranked

4 citations

Daphne Cornish, Lacy M. Simons, Dilip Agarwal, Gajendra S. Shekhawat, Judd F. Hultquist +2 more

The impact of remdesivir on SARS-CoV-2 evolution in vivo

JCI Insight(2025)10.1172/jci.insight.182376

N/A

0DataRank · unranked

6 citations

Lacy M. Simons, Estefany Rios-Guzman, Alexandre Machado de Sant’Anna Carvalho, Maria Francesca Reyes Agnes, Arghavan Alisoltani +4 more

Scheffersomyces spartinae Fungemia among Pediatric Patients, Pakistan, 2020–2024

Emerging infectious diseases(2025)10.3201/eid3108.241604

N/A

0DataRank · unranked

1 citations

Joveria Farooqi, Lacy M. Simons, Judd F. Hultquist, Ramón Lorenzo-Redondo, Charlesnika T. Evans +15 more

Targeting Siglec-10/α3β1 Integrin Interactions Enhances Macrophage-Mediated Phagocytosis of Pancreatic Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.652455

N/A

0DataRank · unranked

3 citations

Gauri Mirji, S M Shamsul Islam, Lacy M. Simons, Sajad Ahmad Bhat, Amanda P. Bonfanti +10 more

Cyclophilin A Prevents HIV-1 Restriction in Lymphocytes by Blocking Human TRIM5α Binding to the Viral Core

Cell Reports(2020)10.1016/j.celrep.2020.02.100

N/A

0DataRank · unranked

101 citations

Mirjana Persaud, Lacy M. Simons, Ángel Bulnes‐Ramos, Cindy Buffone, Alicia Martínez‐López +8 more

Impact of N 6 -methyladenosine (m 6 A) machinery on HIV-1 replication in primary CD4+ T cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.07.686373

N/A

0DataRank · unranked

1 citations

Lacy M. Simons, Siyu Huang, Thea Joseph, Aubrey M. Sawyer, Li Wu +2 more

Patterns and persistence of SARS-CoV-2 IgG antibodies in Chicago to monitor COVID-19 exposure

medRxiv(2020)10.1101/2020.11.17.20233452

N/A

0DataRank · unranked

23 citations

Thomas W. McDade, Lorenzo L. Pesce, Lauren A. Vaught, Nina L. Reiser, Elena Bogdanovic +12 more

TRIM5α restriction of HIV-1-N74D viruses in lymphocytes is caused by a loss of cyclophilin A protection

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.29.318121

N/A

0DataRank · unranked

1 citations

Lacy M. Simons, Ángel Bulnes‐Ramos, Judd F. Hultquist, Felipe Diaz‐Griffero, Anastasia Selyutina

GS-CA1 and lenacapavir stabilize the HIV-1 core and modulate the core interaction with cellular factors

iScience(2021)10.1016/j.isci.2021.103593

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0DataRank · unranked

54 citations

Pan Hu, Sorin O. Miller, Lacy M. Simons, Hyun Jae Yu, Judd F. Hultquist +4 more

Patterns and persistence of SARS-CoV-2 IgG antibodies in Chicago to monitor COVID-19 exposure

JCI Insight(2021)10.1172/jci.insight.146148

N/A

0DataRank · unranked

34 citations

Thomas W. McDade, Lorenzo L. Pesce, Lauren A. Vaught, Nina L. Reiser, Elena Bogdanovic +12 more

Longitudinal analysis of SARS-CoV-2 vaccine breakthrough infections reveal limited infectious virus shedding and restricted tissue distribution

medRxiv(2021)10.1101/2021.08.30.21262701

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0DataRank · unranked

38 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more

Coincident rapid expansion of two SARS-CoV-2 lineages with enhanced infectivity in Nigeria

medRxiv(2021)10.1101/2021.04.09.21255206

N/A

0DataRank · unranked

37 citations

Lacy M. Simons, O. M. Adewumi, Adeola Fowotade, Ewean Chukwuma Omoruyi, Johnson Adekunle Adeniji +11 more

Severity of Illness Caused by Severe Acute Respiratory Syndrome Coronavirus 2 Variants of Concern in Children: A Single-Center Retrospective Cohort Study

medRxiv(2021)10.1101/2021.10.23.21265402

N/A

0DataRank · unranked

14 citations

Ramón Lorenzo-Redondo, Megan E. Reyna, Lacy M. Simons, Judd F. Hultquist, Ami B. Patel +10 more

Assessment and Modeling of COVID-19 Outcomes in a Longitudinal Cohort of Hospitalized Adults

medRxiv(2021)10.1101/2021.07.02.21259665

N/A

0DataRank · unranked

0 citations

Ramón Lorenzo-Redondo, Meg Gibson, Sarah L. Kinch, Jacob P. Vandervaart, Nina L. Reiser +13 more

Longitudinal Analysis of SARS-CoV-2 Vaccine Breakthrough Infections Reveals Limited Infectious Virus Shedding and Restricted Tissue Distribution

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac192

N/A

0DataRank · unranked

65 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more